Gene Details:

  • Gene ID: AT4G29860
  • Gene Symbol: ALT2, AtDSE1, DSE1, EMB2757, TAN
  • Gene Name: ALUMINUM TOLERANT 2, DECREASED SIZE EXCLUSION LIMIT 1, EMBRYO DEFECTIVE 2757, TANMEI
  • Description: Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
  • TAIR Accession: locus:2123869
  • Genome: Araport11_genome_release
  • Species: Arabidopsis thaliana

Transcripts:

Plant Ontology Annotations:

  • PO:0000014  — rosette leaf — hoja en roseta (Spanish, exact), ロゼット葉 (Japanese, exact)
  • PO:0009001  — fruit — frucht (exact, German), fruto (exact, Spanish), 果実 (exact, Japanese), coenocarp (narrow), syncarp (narrow), aggregate fruit (broad), compound fruit (broad), dehiscent fruit (broad), diaspore (broad), indehiscent fruit (broad), multiple fruit (broad), propagule (broad)
  • PO:0009005  — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
  • PO:0009047  — stem — caña (Spanish, exact), culm (exact), eje primario (Spanish, exact), primary axis (exact), primary stem (exact), tallo (Spanish, exact), tronco (Spanish, exact), 茎 (Japanese, exact), bole (narrow), cane (narrow), caudex (narrow), caudices (narrow), core (narrow), primocane (narrow), scape (narrow), stalk (narrow), trunk (narrow)

Gene Ontology:

  • GO:0006974  — involved in — DNA damage response
  • GO:0006282  — involved in — regulation of DNA repair
  • GO:0048481  — involved in — plant ovule development
  • GO:0031570  — involved in — DNA integrity checkpoint signaling
  • GO:0048700  — acts upstream of or within — acquisition of desiccation tolerance in seed
  • GO:0009793  — acts upstream of or within — embryo development ending in seed dormancy
  • GO:0005634  — located in — nucleus
  • GO:0010497  — involved in — plasmodesmata-mediated intercellular transport
  • GO:0051726  — involved in — regulation of cell cycle
  • GO:0010044  — involved in — response to aluminum ion
  • GO:0005737  — located in — cytoplasm
  • GO:0080008  — part of — Cul4-RING E3 ubiquitin ligase complex
  • GO:0072718  — involved in — response to cisplatin
  • GO:0009555  — involved in — pollen development
  • GO:2000280  — involved in — regulation of root development
  • GO:0009663  — involved in — plasmodesma organization

Germplasm Phenotype:

  • CS24342  — embryo defective; developmental arrest of mutant embryos occurs at cotyledon stage.
  • CS24343  — embryo defective; developmental arrest of mutant embryos occurs at cotyledon stage.
  • SALK_097510  — Phenotype very similar to tan-1
  • tan-1  — embryo and seedling defective. Mutant plants had defects in both embryo and seedling development. Mutant seeds accumulate anthocyanin, are intolerant to desiccation, cotyledons did not curl, and had often fused along one side of their margins. Trichomes were formed on the cotyledons during embryogenesis, and the accumulation of storage proteins and lipids were reduced. Tan mutants die as embryos, but immature mutant seeds can be germinated in culture. However, tan mutant seedlings are defective in shoot and root development with stunted roots and hypocotyls that fail to elongate in the dark. True leaves rarely emerged and plants die at seedling stage.
  • tan-1 lec1-2  — Most mutant embryos were arrested at transition or heart stage, with few reaching torpedo stage. Mutant seeds were desiccation intolerant and germinated poorly even when cultured on agar plates.
  • tan-1 lec2-1  — Similar to tan-1 lec1-2, embryo arrested mostly at transition or heart stage.

Literature:

Sequences:

cDNA Sequence
  • >AT4G29860.1
    TCGGTGTTCCTGTTGTTAAAGTCTGAGACTTGGATTCGATTAAGTTGTGTGTTCGCTTGGTTTCTCTATTACAAGAGTTTGGTTTTGTGTAGTAGTTGAATCAGAGATGAGTAAGAGACCTCCGCCTGATCCAGTGGCTGTGCTTAGAGGGCACCGTCACTCTGTTATGGATGTTTCCTTCCATCCATCAAAATCTCTGCTTTTCACTGGTTCAGCTGATGGAGAGTTGAGGATTTGGGATACTATTCAGCACCGTGCAGTTTCTTCTGCTTGGGCTCATAGTAGAGCAAATGGGGTTTTAGCTGTAGCAGCTAGTCCCTGGTTAGGAGAGGACAAGATTATCAGCCAGGGAAGAGATGGAACTGTTAAGTGTTGGGATATTGAAGATGGTGGTCTATCAAGAGACCCATTACTAATACTTGAGACATGCGCCTATCATTTTTGCAAGTTCTCTCTTGTTAAGAAGCCTAAGAATTCTCTGCAAGAAGCTGAAAGTCACTCACGGGGTTGTGATGAGCAGGATGGTGGAGACACATGTAATGTTCAAATTGCTGATGATAGTGAACGATCTGAGGAGGATTCTGGTTTGCTTCAGGATAAAGATCATGCTGAAGGTACCACTTTTGTAGCAGTAGTAGGGGAGCAACCTACTGAGGTAGAGATATGGGATCTCAATACCGGAGACAAGATAATACAGCTTCCTCAAAGTAGCCCTGACGAATCCCCCAATGCTTCTACCAAAGGAAGAGGAATGTGTATGGCTGTTCAATTGTTTTGCCCTCCTGAATCACAGGGTTTCTTACATGTCTTAGCTGGTTATGAGGATGGTTCAATACTTCTTTGGGATATACGCAATGCTAAGATTCCTCTAACAAGTGTGAAGTTTCATTCAGAGCCAGTTTTAAGTCTTAGTGTTGCATCATCATGTGATGGAGGAATCTCAGGAGGGGCAGATGACAAAATTGTGATGTATAATCTCAACCATTCAACTGGTTCTTGTACAATAAGGAAAGAGATTACTTTGGAAAGGCCCGGTGTATCGGGCACCTCAATTCGAGTCGATGGGAAAATTGCAGCCACGGCTGGTTGGGACCACAGAATACGAGTCTATAATTACCGCAAAGGAAATGCTCTAGCAATACTAAAGTACCACCGAGCAACGTGCAACGCTGTGTCCTACTCTCCAGACTGTGAGCTAATGGCGTCTGCGTCTGAAGATGCAACTGTTGCTCTCTGGAAACTATATCCTCCCCATAAATCTCTCTGATCTTTATGGTTCGGTTTTGGTTTGATTTCTTGACCTGAATCTCTTGAATTGGTAAATATACATGATGTCATCATCAAAAAAACAAATGGAAAAACAGAGAGTATTTTCTGGTTTGTTATATATAGCCCACTGATTAGTTTGATTTGTTCAAACTCGCACGTTCTGCCGTTTTCGGAGAAAAGAATAATCAAACGACGCGTAGTTTGAATCATAGTACGTTGAGTAGATTTCACGACCAAAAGAAATTGCATTTGCACCAAACTAATCCGTCACCGTCGTAGGAGACTCATAACATCTGAAGACCTAAAATTCAAACACTGTGTAAAATGGCGTACGTCGACCATGCGTTCTCGATAACGGACGAGGACATTATGATTGAGACTTCATACACCGTCAATAACCGACCGCCGGTGAAGGAGATCGCACTCGCGGTGGCTTTACTCGTGTTCGGAACCCTAGGAATTGTCTCCGGTTTCTTCATGGCTTATAATCGAGTTGGCGGTGATCGAGGCCACGGGATTTTCTTCATCGTCCTCGGGTGTCTTCTGTTCATTCCCGGGTTTTACTATACACGGATTGCGTATTATGCTTACAAAGGATACAAAGGTTTCTCCTTCTCAAACATACCGCCCGTTTAGGTGTCCCCTTTTGAATCTCTCCTACTCAAAATGTATAGAGATGTTTTATTACTCTATAGCAATGATTGACTTGTTTTCTCTTTTGTGTAGTTTTATAGAATTTGAGTCCAGTCCTTTCTT
CDS Sequence
Protein Sequence