Information report for AT4G29830
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- SALK_083364 — Abnormal phyllotaxy. Occasional tricot seedlings. Plieotrophic growth defects.
- vip3-1 — Early flowering.
- vip3-1 — H3K4me3 and K3K36me2 modifications are redistributed within genes but the overall abundance of these modifications within chromatin is not changed.
Functional Keywords
Literature and News
- Conservation of Arabidopsis flowering genes in model legumes. DOI: 10.1104/pp.104.057018 ; PMID: 15778459
- Natural antisense transcripts with coding capacity in Arabidopsis may have a regulatory role that is not linked to double-stranded RNA degradation. DOI: 10.1186/gb-2005-6-6-r51 ; PMID: 15960803
- Non conservation of the meiotic function of the Ski8/Rec103 homolog in Arabidopsis. DOI: 10.1111/j.1365-2443.2006.00972.x ; PMID: 16716192
- Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases. DOI: 10.1105/tpc.107.055418 ; PMID: 18223036
- Genic and global functions for Paf1C in chromatin modification and gene expression in Arabidopsis. DOI: 10.1371/journal.pgen.1000077 ; PMID: 18725930
- Characterization of brassinosteroid-regulated proteins in a nuclear-enriched fraction of Arabidopsis suspension-cultured cells. DOI: 10.1016/j.plaphy.2011.04.012 ; PMID: 21571540
- Enhancement of meristem formation by bouquet-1, a mis-sense allele of the vernalization independence 3 gene encoding a WD40 repeat protein in Arabidopsis thaliana. DOI: 10.1111/gtc.12014 ; PMID: 23134555
- SKI2 mediates degradation of RISC 5'-cleavage fragments and prevents secondary siRNA production from miRNA targets in Arabidopsis. DOI: 10.1093/nar/gkv1014 ; PMID: 26464441
- SUPERKILLER Complex Components Are Required for the RNA Exosome-Mediated Control of Cuticular Wax Biosynthesis in Arabidopsis Inflorescence Stems. DOI: 10.1104/pp.16.00450 ; PMID: 27208312
- The Composition of the Arabidopsis RNA Polymerase II Transcript Elongation Complex Reveals the Interplay between Elongation and mRNA Processing Factors. DOI: 10.1105/tpc.16.00735 ; PMID: 28351991
- Phyllotactic regularity requires the Paf1 complex in Arabidopsis. DOI: 10.1242/dev.154369 ; PMID: 28982682
- A Two-Headed Monster to Avert Disaster: HBS1/SKI7 Is Alternatively Spliced to Build Eukaryotic RNA Surveillance Complexes. DOI: 10.3389/fpls.2018.01333 ; PMID: 30258456
- Paf1c defects challenge the robustness of flower meristem termination in Arabidopsis thaliana. DOI: 10.1242/dev.173377 ; PMID: 31540913
- Investigation of the effects of P1 on HC-pro-mediated gene silencing suppression through genetics and omics approaches. DOI: 10.1186/s40529-020-00299-x ; PMID: 32748085
- Nuclear and cytoplasmic RNA exosomes and PELOTA1 prevent miRNA-induced secondary siRNA production in Arabidopsis. DOI: 10.1093/nar/gkab1289 ; PMID: 35037064
- Polymerase II-Associated Factor 1 Complex-Regulated FLOWERING LOCUS C-Clade Genes Repress Flowering in Response to Chilling. DOI: 10.3389/fpls.2022.817356 ; PMID: 35222476
- Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases. DOI: 10.1105/tpc.107.055418 ; PMID: 18223036
- Genic and global functions for Paf1C in chromatin modification and gene expression in Arabidopsis. DOI: 10.1371/journal.pgen.1000077 ; PMID: 18725930
- Analysis of protein complexes in Arabidopsis leaves using size exclusion chromatography and label-free protein correlation profiling. DOI: 10.1016/j.jprot.2017.06.004 ; PMID: 28627464
Gene Resources
- UniProt: A0A178UYC1
- EMBL: CACRSJ010000109, CACSHJ010000095, LR881469
- AlphaFoldDB: A0A178UYC1
- EnsemblPlants: AT4G29830.1
- Gramene: AT4G29830.1
- KEGG: ath:AT4G29830
- Orthologous matrix: LDSSMCL
- ExpressionAtlas: AT4G29830
- InterPro: IPR001680, IPR015943, IPR019775
- PANTHER: PTHR44090, PTHR44090:SF1
- SUPFAM: SSF50978
- PROSITE: PS00678, PS50082, PS50294
- Gene3D: 2.130.10.10
- OrthoDB: A0A178UYC1
- SWISS-MODEL: A0A178UYC1
- Conserved Domain Database: cd00200
Sequences
cDNA Sequence
- >AT4G29830.1
AAACAAGAATACGGAACGATGTTAAACACTCTATTGTTTCCAACTACTAAAAACGACGCGAGTTTCTATTTTATAACTAAAAAACGAGAATCAAAGTCTCTGTTTCAAATTTGGGTCTTTTGCTTCTTCTTGCTCACTTGAGGAAACACAGTAAAAACCTAAAAAGAGAATGAAACTCGCAGGTCTGAAATCGATCGAGAACGCTCACGAAGATTCCGTTTGGGCAGCGACGTGGGTTCCGGCGACGGAAGATCGACCGGCGTTGCTTCTGACTGGATCTCTTGACGAGACGGTGAAGTTATGGCGACCGGACGAGCTGGATCTTGTGCGGACTAATACTGGACACTCTTTGGGAGTAGCAGCTTTGGCTGCGCATCCTTCTGGGATTATTGCAGCATCTTCTTCGATTGATAGCTTTGTCCGTGTGTTTGATGTTGATACTAATGCTACGATTGCTGTTTTGGAAGCTCCTCCTTCTGAGGTTTGGGGAATGCAATTTGAACCTAAGGGTACGATCCTTGCTGTTGCAGGTGGAAGTAGTGCCTCAGTCAAGCTTTGGGACACTGCAAGCTGGAGATTAATCTCAACTCTATCAATCCCACGCCCAGATGCACCAAAACCTTCCGATAAAACCAGCAGCAAGAAATTCGTTCTCTCGGTGGCTTGGTCTCCTAATGGGAAACGACTTGCTTGTGGTTCAATGGATGGTACGATCTGTGTTTTTGATGTTGACCGCTCAAAGCTACTTCACCAGCTAGAAGGTCACAATATGCCTGTAAGGTCCCTTGTGTTCTCCCCTGTAGACCCGAGAGTCCTCTTCTCTGGATCAGATGATGGGCATGTGAACATGCACGATGCAGAAGGGAAAACGCTGTTGGGGTCCATGTCAGGGCACACGAGTTGGGTGCTGAGCGTTGATGCTAGCCCAGACGGTGGAGCCATAGCAACCGGCTCAAGCGATAGAACTGTGAGGCTATGGGATCTTAAAATGAGAGCTGCGATTCAGACAATGAGCAACCACAATGACCAGGTTTGGTCTGTGGCCTTTAGACCACCAGGTGGAACCGGTGTCCGGGCTGGTCGACTTGCTAGTGTCTCTGATGACAAGAGTGTATCGCTCTATGATTACTCATGAACAATTCGGTTTTTTGACTTTTTTCTTTTATGCATTCTCCAAGACGCATCTAGTTGTAACAATATAATCTGCAACAGGTTGATTTTGACCGGAGTCTTTAGATTTATCGCTTACACAAAAAACAAAGAAGATAAAATGATTCA
CDS Sequence
Protein Sequence