Information report for AT4G28610
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
Functional Keywords
Literature and News
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- Genome-wide analysis of the Arabidopsis leaf transcriptome reveals interaction of phosphate and sugar metabolism. DOI: 10.1104/pp.106.090167 ; PMID: 17085508
- Members of the PHO1 gene family show limited functional redundancy in phosphate transfer to the shoot, and are regulated by phosphate deficiency via distinct pathways. DOI: 10.1111/j.1365-313X.2007.03108.x ; PMID: 17461783
- Increased expression of the MYB-related transcription factor, PHR1, leads to enhanced phosphate uptake in Arabidopsis thaliana. DOI: 10.1111/j.1365-3040.2007.01734.x ; PMID: 17927693
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- det1-1-induced UV-C hyposensitivity through UVR3 and PHR1 photolyase gene over-expression. DOI: 10.1111/j.1365-313X.2010.04249.x ; PMID: 20487384
- Global analysis of microRNA in Arabidopsis in response to phosphate starvation as studied by locked nucleic acid-based microarrays. DOI: 10.1111/j.1399-3054.2010.01384.x ; PMID: 20487378
- The transcription factor PHR1 plays a key role in the regulation of sulfate shoot-to-root flux upon phosphate starvation in Arabidopsis. DOI: 10.1186/1471-2229-11-19 ; PMID: 21261953
- Coordinated transcriptional regulation underlying the circadian clock in Arabidopsis. DOI: 10.1038/ncb2219 ; PMID: 21499259
- Speeding cis-trans regulation discovery by phylogenomic analyses coupled with screenings of an arrayed library of Arabidopsis transcription factors. DOI: 10.1371/journal.pone.0021524 ; PMID: 21738689
- Coordination between zinc and phosphate homeostasis involves the transcription factor PHR1, the phosphate exporter PHO1, and its homologue PHO1;H3 in Arabidopsis. DOI: 10.1093/jxb/ert444 ; PMID: 24420568
- SPX1 is a phosphate-dependent inhibitor of Phosphate Starvation Response 1 in Arabidopsis. DOI: 10.1073/pnas.1404654111 ; PMID: 25271326
- Differentiating phosphate-dependent and phosphate-independent systemic phosphate-starvation response networks in Arabidopsis thaliana through the application of phosphite. DOI: 10.1093/jxb/erv025 ; PMID: 25697796
- A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana. DOI: 10.1111/nph.13591 ; PMID: 26243630
- Arabidopsis PHL2 and PHR1 Act Redundantly as the Key Components of the Central Regulatory System Controlling Transcriptional Responses to Phosphate Starvation. DOI: 10.1104/pp.15.01336 ; PMID: 26586833
- Acclimation of the crucifer Eutrema salsugineum to phosphate limitation is associated with constitutively high expression of phosphate-starvation genes. DOI: 10.1111/pce.12750 ; PMID: 27038434
- Systematic characterization of novel lncRNAs responding to phosphate starvation in Arabidopsis thaliana. DOI: 10.1186/s12864-016-2929-2 ; PMID: 27538394
- Identification of primary and secondary metabolites with phosphorus status-dependent abundance in Arabidopsis, and of the transcription factor PHR1 as a major regulator of metabolic changes during phosphorus limitation. DOI: 10.1111/pce.12378 ; PMID: 24894834
- Root Cell-Specific Regulators of Phosphate-Dependent Growth. DOI: 10.1104/pp.16.01698 ; PMID: 28465462
- BOTRYTIS-INDUCED KINASE1, a plasma membrane-localized receptor-like protein kinase, is a negative regulator of phosphate homeostasis in Arabidopsis thaliana. DOI: 10.1186/s12870-016-0841-1 ; PMID: 27389008
- Proline Accumulation Is Regulated by Transcription Factors Associated with Phosphate Starvation. DOI: 10.1104/pp.17.00791 ; PMID: 28765275
- A NIGT1-centred transcriptional cascade regulates nitrate signalling and incorporates phosphorus starvation signals in Arabidopsis. DOI: 10.1038/s41467-018-03832-6 ; PMID: 29636481
- The ARF7 and ARF19 Transcription Factors Positively Regulate PHOSPHATE STARVATION RESPONSE1 in Arabidopsis Roots. DOI: 10.1104/pp.17.01713 ; PMID: 30026290
- Functional Characterization of Arabidopsis PHL4 in Plant Response to Phosphate Starvation. DOI: 10.3389/fpls.2018.01432 ; PMID: 30327661
- Plant-mediated effects of soil phosphorus on the root-associated fungal microbiota in Arabidopsis thaliana. DOI: 10.1111/nph.15538 ; PMID: 30317641
- Iron and Phosphate Deficiency Regulators Concertedly Control Coumarin Profiles in Arabidopsis thaliana Roots During Iron, Phosphate, and Combined Deficiencies. DOI: 10.3389/fpls.2019.00113 ; PMID: 30804973
- SPX4 Acts on PHR1-Dependent and -Independent Regulation of Shoot Phosphorus Status in Arabidopsis. DOI: 10.1104/pp.18.00594 ; PMID: 31262954
- Nitrate-inducible NIGT1 proteins modulate phosphate uptake and starvation signalling via transcriptional regulation of SPX genes. DOI: 10.1111/tpj.14637 ; PMID: 31811679
- Photosynthetic response to increased irradiance correlates to variation in transcriptional response of lipid-remodeling and heat-shock genes. DOI: 10.1002/pld3.69 ; PMID: 31245733
- NIGT1 family proteins exhibit dual mode DNA recognition to regulate nutrient response-associated genes in Arabidopsis. DOI: 10.1371/journal.pgen.1009197 ; PMID: 33137118
- Remodeling of Root Growth Under Combined Arsenic and Hypoxia Stress Is Linked to Nutrient Deprivation. DOI: 10.3389/fpls.2020.569687 ; PMID: 33193499
- SPX4 interacts with both PHR1 and PAP1 to regulate critical steps in phosphorus-status-dependent anthocyanin biosynthesis. DOI: 10.1111/nph.17139 ; PMID: 33617039
- Arsenite provides a selective signal that coordinates arsenate uptake and detoxification through the regulation of PHR1 stability in Arabidopsis. DOI: 10.1016/j.molp.2021.05.020 ; PMID: 34048950
- Plant immunity suppression via PHR1-RALF-FERONIA shapes the root microbiome to alleviate phosphate starvation. DOI: 10.15252/embj.2021109102 ; PMID: 35146778
- PHR1 positively regulates phosphate starvation-induced anthocyanin accumulation through direct upregulation of genes F3'H and LDOX in Arabidopsis. DOI: 10.1007/s00425-022-03952-w ; PMID: 35842503
- Nitrogen-inducible GLK1 modulates phosphate starvation response via the PHR1-dependent pathway. DOI: 10.1111/nph.18499 ; PMID: 36111350
- Inositol polyphosphates-regulated polyubiquitination of PHR1 by NLA E3 ligase during phosphate starvation response in Arabidopsis. DOI: 10.1111/nph.18621 ; PMID: 36377104
- PHOSPHATE RESPONSE 1 family members act distinctly to regulate transcriptional responses to phosphate starvation. DOI: 10.1093/plphys/kiac521 ; PMID: 36417239
- Phosphorylation of S11 in PHR1 negatively controls its transcriptional activity. DOI: 10.1111/ppl.13831 ; PMID: 36444477
- Elucidating the unknown transcriptional responses and PHR1-mediated biotic and abiotic stress tolerance during phosphorus limitation. DOI: 10.1093/jxb/erad009 ; PMID: 36629302
- Molecular mechanism of phosphorous signaling inducing anthocyanin accumulation in Arabidopsis. DOI: 10.1016/j.plaphy.2023.01.029 ; PMID: 36706691
- PHOSPHATE STARVATION RESPONSE1 (PHR1) interacts with JASMONATE ZIM-DOMAIN (JAZ) and MYC2 to modulate phosphate deficiency-induced jasmonate signaling in Arabidopsis. DOI: 10.1093/plcell/koad057 ; PMID: 36856677
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. DOI: 10.1093/molbev/msj051 ; PMID: 16280546
Gene Resources
- UniProt: A0A178UXC9
- EMBL: LR881469, LUHQ01000004
- AlphaFoldDB: A0A178UXC9
- EnsemblPlants: AT4G28610.1
- Gramene: AT4G28610.1
- KEGG: ath:AT4G28610
- Orthologous matrix: PHEKHSR
- ExpressionAtlas: AT4G28610
- InterPro: IPR001005, IPR006447, IPR009057
- PANTHER: PTHR31499, PTHR31499:SF80
- SUPFAM: SSF46689
- PROSITE: PS51294
- Gene3D: 1.10.10.60
- SWISS-MODEL: A0A178UXC9
Sequences
cDNA Sequence
- >AT4G28610.1
TTGTTTAAGACAGCCACCACCTCCGAAATTAACAAGAAGGCGAAGAAAATCATCACCACCGTCAACTTTTCTCTTGCGGACAAGACGATTCTCCGATTATCCCCAAGAGGAGAATCCTCATAATCATTTTCTCCGATTCGATTCGTCTTCCTTGGTCCTGGATTGCTTCATGAATTTCTAGGACAACAATGGAGGCTCGTCCAGTTCATAGATCAGGTTCGAGAGACCTCACACGCACTTCTTCAATCCCATCTACACAAAAACCTTCACCAGTAGAAGATAGTTTCATGAGATCAGATAACAACAGTCAGTTAATGTCTAGACCATTAGGACAAACCTACCATTTACTTTCATCTAGTAACGGTGGAGCTGTTGGACATATATGTTCTTCTTCATCATCTGGTTTTGCAACCAATCTCCATTACTCAACTATGGTATCTCATGAGAAACAACAACACTACACAGGAAGCAGCAGTAATAATGCTGTGCAGACACCAAGCAACAACGATAGTGCTTGGTGTCATGATTCATTGCCAGGAGGGTTTCTTGACTTCCATGAAACCAACCCGGCGATTCAAAACAACTGTCAGATTGAGGATGGTGGCATTGCGGCTGCTTTTGATGACATTCAAAAACGAAGTGATTGGCATGAATGGGCTGACCATTTGATCACTGATGATGATCCTTTGATGTCTACTAACTGGAATGATCTCTTGCTTGAAACAAATTCCAATTCAGATTCAAAGGACCAGAAGACACTGCAAATTCCGCAACCTCAGATTGTTCAGCAGCAACCTTCTCCGTCTGTGGAATTGCGACCTGTTAGCACAACATCTTCAAACAGCAATAACGGAACGGGCAAGGCACGAATGCGTTGGACGCCAGAGCTTCACGAGGCTTTTGTTGAGGCTGTCAACAGTCTTGGCGGTAGTGAAAGAGCTACTCCTAAAGGGGTACTGAAGATTATGAAAGTTGAAGGCTTGACTATATATCATGTTAAAAGCCATTTACAGAAATATAGGACAGCTAGATATCGGCCAGAACCATCAGAAACTGGTTCGCCAGAAAGGAAGTTGACACCGCTTGAACATATAACATCTCTTGATTTGAAAGGTGGGATAGGTATTACAGAGGCTCTACGACTTCAGATGGAAGTACAGAAGCAACTCCATGAGCAGCTCGAGATTCAAAGAAACCTGCAACTCCGAATAGAAGAACAAGGCAAGTACCTGCAAATGATGTTCGAGAAGCAAAACTCTGGTCTTACCAAAGGGACAGCCTCAACATCAGATTCCGCAGCCAAATCTGAACAAGAAGACAAGAAGACTGCTGATTCGAAGGAGGTTCCAGAAGAAGAAACCAGGAAATGTGAGGAACTAGAATCTCCACAGCCAAAGCGTCCCAAAATCGATAATTGAAAGTATTGGTCTTTTGCTGGATAATCTCGGAGTTTCAGAGTTAACAGTGATAGAGAGAACGAGCTCTTATCTTGAGGTTCTTCAGGACTTCTCTCTTTACTGTTTAACTATTTTTCTGATGGAAGACTCTCAACTCAGCTGTGTAGACAAACAACAGATCCCCAAGGAAGAAACAAAACAAAAATAAAAAGTTAGTTTGGGAGAATCTTCATCATTCAGTGTAATCTAAATGCTTAACTCATCATTAGTTTTACAGCTACAGATTTCTTATGTTAATCTTTTTTAGAATATCAAACCTGAAAAGTTTTCTCCGAAAAATTTATAATCTTTTATGAGTAAATAGTAAACCTGGC
CDS Sequence
Protein Sequence