Information report for AT4G27960
Gene Details
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Functional Descriptions
- GO:0006511 — acts upstream of or within — ubiquitin-dependent protein catabolic process
- GO:0006511 — involved in — ubiquitin-dependent protein catabolic process
- GO:0004842 — enables — ubiquitin-protein transferase activity
- GO:0005634 — is active in — nucleus
- GO:0005634 — located in — nucleus
Functional Keywords
Literature and News
- Identification of plant cytoskeletal, cell cycle-related and polarity-related proteins using Schizosaccharomyces pombe. DOI: 10.1046/j.1365-313x.1996.10040761.x ; PMID: 8893552
- Ubiquitylation in plants: a post-genomic look at a post-translational modification. DOI: 10.1016/s1360-1385(01)02080-5 ; PMID: 11590065
- Molecular characterization of plant ubiquitin-conjugating enzymes belonging to the UbcP4/E2-C/UBCx/UbcH10 gene family. DOI: 10.1104/pp.011353 ; PMID: 12427990
- Protein degradation in signaling. DOI: 10.1016/s1369-5266(00)00100-x ; PMID: 11019805
- Components of nucleotide excision repair and DNA damage tolerance in Arabidopsis thaliana. DOI: 10.1002/em.20094 ; PMID: 15645454
- Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. DOI: 10.1104/pp.105.063743 ; PMID: 16166256
- Expression of arabinogalactan protein genes in pollen tubes of Arabidopsis thaliana. DOI: 10.1007/s00425-005-0137-4 ; PMID: 16228244
- Genome analysis and functional characterization of the E2 and RING-type E3 ligase ubiquitination enzymes of Arabidopsis. DOI: 10.1104/pp.105.067983 ; PMID: 16339806
- AtCHIP functions as an E3 ubiquitin ligase of protein phosphatase 2A subunits and alters plant response to abscisic acid treatment. DOI: 10.1111/j.1365-313X.2006.02730.x ; PMID: 16640601
- Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding. DOI: 10.1186/1471-2164-9-57 ; PMID: 18230180
- LEA (late embryogenesis abundant) proteins and their encoding genes in Arabidopsis thaliana. DOI: 10.1186/1471-2164-9-118 ; PMID: 18318901
- The small ubiquitin-like modifier (SUMO) and SUMO-conjugating system of Chlamydomonas reinhardtii. DOI: 10.1534/genetics.108.089128 ; PMID: 18493050
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- Identification and testing of superior reference genes for a starting pool of transcript normalization in Arabidopsis. DOI: 10.1093/pcp/pcq128 ; PMID: 20798276
- Identification of lipids and lipid-binding proteins in phloem exudates from Arabidopsis thaliana. DOI: 10.1093/jxb/ers028 ; PMID: 22442409
- Selection and validation of endogenous reference genes for qRT-PCR analysis in leafy spurge (Euphorbia esula). DOI: 10.1371/journal.pone.0042839 ; PMID: 22916167
- A stress inducible SUMO conjugating enzyme gene (SaSce9) from a grass halophyte Spartina alterniflora enhances salinity and drought stress tolerance in Arabidopsis. DOI: 10.1186/1471-2229-12-187 ; PMID: 23051937
- Wheat germ-based protein libraries for the functional characterisation of the Arabidopsis E2 ubiquitin conjugating enzymes and the RING-type E3 ubiquitin ligase enzymes. DOI: 10.1186/s12870-015-0660-9 ; PMID: 26556605
- The phosphatidylinositol 3-phosphate effector FYVE3 regulates FYVE2-dependent autophagy in Arabidopsis thaliana. DOI: 10.3389/fpls.2023.1160162 ; PMID: 37008475
- Protein degradation in signaling. DOI: 10.1016/s1369-5266(00)00100-x ; PMID: 11019805
- Genome analysis and functional characterization of the E2 and RING-type E3 ligase ubiquitination enzymes of Arabidopsis. DOI: 10.1104/pp.105.067983 ; PMID: 16339806
Gene Resources
- UniProt: F4JKF3
- EMBL: CP002687
- AlphaFoldDB: F4JKF3
- EnsemblPlants: AT4G27960.2
- Gramene: AT4G27960.2
- ExpressionAtlas: AT4G27960
- InterPro: IPR000608, IPR016135, IPR023313
Sequences
cDNA Sequence
- >AT4G27960.2
AAGCAGCAGAGTCCACTAATCAAACGAACCAGAATTTACCCGCACCCTATTTATTGTGGTCGCGACCACACAACATTTTCAACTTCTTCTTCTCTTCCGTTTCACCACCCTTTCTTCTCCTAAATTCGAAGAACCAAAACCAAAAACGTGAATTCGGAGTTATGATTTTGGATCTTCTTCCCGTCTTTATATATAATTTTCTGGGTTATGTTTTTCTTCTTCTTAATTCATCTGACCATTGGATTGGTTTTCGATTGCAGAGTCTTCAATTGGAATTTGGATCGTGGGATTTTGGAAATGGCATCGAAACGGATTTTGAAGGAATTGAAGGATCTGCAGAAGGATCCTCCTACTTCATGTAGCGCAGGACCCGTTGCGGAAGACATGTTTCATTGGCAGGCCACTATAATGGGTCCATCGGATAGCCCTTATTCTGGAGGAGTTTTTCTTGTAACCATCCATTTCCCTCCAGATTACCCATTTAAGCCTCCTAAGGTGGCTTTTAGGACGAAGGTGTTCCATCCAAACATTAACAGCAATGGAAGCATCTGCCTCGACATCTTGAAGGAGCAGTGGAGTCCTGCTCTCACAATTTCCAAGGTGCTGCTATCGATCTGTTCTTTGTTAACGGATCCAAACCCAGATGATCCTTTGGTCCCTGAGATAGCTCACATGTACAAGACAGACAAGAACAAGTACGAGTCCACTGCTCGGACCTGGACCCAAAAGTATGCCATGGGCTGACACAAATACTGTCCTTAAGGAAGAGCCCTAATAATTAAACTCTTCTTATTTCTATGTAATGATCTTTTATAGACTTGTCTGTCTTATAAAATTTGTGAAGACAGGATCAGTAAGAAATTATTTGATCTCCATTCTATGGAATTGTAAAACGTAAATCATCATCCCGTCTGCTGTTTCTTTATTGCGTGATGCCGATGCGTCTCTGTGTTTATCAAGGCTCATATTATTTTGGATTTTATTCTGTCCAAAGCCCAAACTAGCTACAATCGTAAGCCTTTCCGTTTTCGTAAACATTATTAACTTACATACGTAACATTTTCATTTTAGTATTATGTGGGCAATGATTTATGTAAATGGTGTATGGGGCCTAAGAGTGAAGTTGTTCATGAGTTAAGATTGTGATTGTGATCCATCTGGAACAATTTAATAAAATGGGACAAAGGAATTATCACTTTGAAGTTTGACCAATTTAAGATTTACAAAAAATAGTAAAACTATTAAAATCACCTTTTCCCCAAATAATATACTCAAACG - >AT4G27960.1
AAGCAGCAGAGTCCACTAATCAAACGAACCAGAATTTACCCGCACCCTATTTATTGTGGTCGCGACCACACAACATTTTCAACTTCTTCTTCTCTTCCGTTTCACCACCCTTTCTTCTCCTAAATTCGAAGAACCAAAACCAAAAACGTGAATTCGGAGTTATGATTTTGGATCTTCTTCCCGTCTTTATATATAATTTTCTGGGTTATGTTTTTCTTCTTCTTAATTCATCTGACCATTGGATTGGTTTTCGATTGCAGAGTCTTCAATTGGAATTTGGATCGTGGGATTTTGGAAATGGCATCGAAACGGATTTTGAAGGAATTGAAGGATCTGCAGAAGGATCCTCCTACTTCATGTAGCGCAGGACCCGTTGCGGAAGACATGTTTCATTGGCAGGCCACTATAATGGGTCCATCGGATAGCCCTTATTCTGGAGGAGTTTTTCTTGTAACCATCCATTTCCCTCCAGATTACCCATTTAAGCCTCCTAAGGTGGCTTTTAGGACGAAGGTGTTCCATCCAAACATTAACAGCAATGGAAGCATCTGCCTCGACATCTTGAAGGAGCAGTGGAGTCCTGCTCTCACAATTTCCAAGGTGCTGCTATCGATCTGTTCTTTGTTAACGGATCCAAACCCAGATGATCCTTTGGTCCCTGAGATAGCTCACATGTACAAGACAGACAAGAACAAGTACGAGTCCACTGCTCGGACCTGGACCCAAAAGTATGCCATGGGCTGACACAAATACTGTCCTTAAGGAAGAGCCCTAATAATTAAACTCTTCTTATTTCTATGTAATGATCTTTTATAGACTTGTCTGTCTTATAAAATTTGTGAAGACAGGATCAGTAAGAAATTATTTGATCTCCATTCTATGGAATTGTAAAACGTAAATCATCATCCCGTCTGCTGTTTCTTTATTGCGTGATGCCGATGCGTCTCTGTGTTTATCAAGGCTCATATTATTTTGGATTTTATTCTGTCCAAAGCCCAAACTAGCTACAATCGTAAGCCTTTCCGTTTTCGTAAACATTATTAACTTACATACGTAACATTTTCATTTTAGTATTATGTGGGCAATGATTTATGTAAATGGTGTATGGGGCCTAAGAGTGAAGTTGTTCATGAGTTAAGATTGTGATTGTGATCCATCTGGAACAATTTAATAAAATGGGACAAAGGAATTATCACTTTGAAGTTTGACCAATTTAAGATTTACAAAAAATAGTAAAACTATTAAAATCACCTTTTCCCCAAATAATATACTCAAACG
CDS Sequence
Protein Sequence