Gene Details:

• Gene ID: AT4G27910
• Gene Symbol: ATX4, SDG16
• Gene Name: Arabidopsis TRITHORAX 4, SET domain protein 16
• Description: SET domain protein 16;(source:Araport11)
• TAIR Accession: locus:2132912
• Genome: Araport11_genome_release
• Species: Arabidopsis thaliana

Transcripts:

• AT4G27910.1

Plant Ontology Annotations:

• PO:0000037  — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
• PO:0008019  — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
• PO:0009006  — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
• PO:0009009  — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
• PO:0009025  — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
• PO:0009029  — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
• PO:0009031  — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
• PO:0009046  — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
• PO:0009052  — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
• PO:0020030  — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
• PO:0020038  — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
• PO:0020100  — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
• PO:0020137  — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
• PO:0025022  — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
• PO:0025281  — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)

Gene Ontology:

• GO:0006357  — involved in — regulation of transcription by RNA polymerase II
• GO:0048188  — part of — Set1C/COMPASS complex
• GO:0040029  — acts upstream of or within — epigenetic regulation of gene expression
• GO:0005634  — located in — nucleus
• GO:0031011  — part of — Ino80 complex
• GO:0040029  — involved in — epigenetic regulation of gene expression

Germplasm Phenotype:

• CS72324  — significantly early flowering and accelerated leaf senescence

Function-related keywords:

• shoot axis apex ,  leaf lamina base ,  shoot system ,  plant embryo ,  vascular leaf ,  stamen ,  sepal ,  flower ,  inflorescence flower pedicel ,  cotyledon ,  petiole ,  hypocotyl ,  leaf apex ,  collective leaf structure ,  pollen

Literature:

• Cell cycle-regulated gene expression in Arabidopsis.   DOI:  10.1074/jbc.M207570200 ;  PMID:  12169696
• Comparative analysis of SET domain proteins in maize and Arabidopsis reveals multiple duplications preceding the divergence of monocots and dicots.   DOI:  10.1104/pp.102.013722 ;  PMID:  12805620
• A transcriptome-based characterization of habituation in plant tissue culture.   DOI:  10.1104/pp.105.076059 ;  PMID:  16489130
• ATX3, ATX4, and ATX5 Encode Putative H3K4 Methyltransferases and Are Critical for Plant Development.   DOI:  10.1104/pp.16.01944 ;  PMID:  28550207
• Trithorax-group protein ATX5 mediates the glucose response via impacting the HY1-ABI4 signaling module.   DOI:  10.1007/s11103-018-0791-0 ;  PMID:  30406469
• Gene expression changes occurring at bolting time are associated with leaf senescence in Arabidopsis.   DOI:  10.1002/pld3.279 ;  PMID:  33204935
• COMPASS functions as a module of the INO80 chromatin remodeling complex to mediate histone H3K4 methylation in Arabidopsis.   DOI:  10.1093/plcell/koab187 ;  PMID:  34270751
• Arabidopsis Trithorax histone methyltransferases are redundant in regulating development and DNA methylation.   DOI:  10.1111/jipb.13406 ;  PMID:  36354145

Sequences: