Information report for AT4G27880
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- GO:0005634 — located in — nucleus
- GO:0005886 — located in — plasma membrane
- GO:0005515 — enables — protein binding
- GO:0006511 — involved in — ubiquitin-dependent protein catabolic process
- GO:0008270 — enables — zinc ion binding
- GO:0005739 — located in — mitochondrion
- GO:0061630 — enables — ubiquitin protein ligase activity
- GO:0005737 — located in — cytoplasm
- GO:0005737 — is active in — cytoplasm
Functional Keywords
Literature and News
- Evaluation and classification of RING-finger domains encoded by the Arabidopsis genome. DOI: 10.1186/gb-2002-3-4-research0016 ; PMID: 11983057
- Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins. DOI: 10.1105/tpc.016055 ; PMID: 14671022
- Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes. DOI: 10.1186/1471-2164-7-81 ; PMID: 16615871
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- TRAF Family Proteins Regulate Autophagy Dynamics by Modulating AUTOPHAGY PROTEIN6 Stability in Arabidopsis. DOI: 10.1105/tpc.17.00056 ; PMID: 28351989
- Arabidopsis SINAT Proteins Control Autophagy by Mediating Ubiquitylation and Degradation of ATG13. DOI: 10.1105/tpc.19.00413 ; PMID: 31732704
- Cysteine protease RD21A regulated by E3 ligase SINAT4 is required for drought-induced resistance to Pseudomonas syringae in Arabidopsis. DOI: 10.1093/jxb/eraa255 ; PMID: 32453812
- SINAT E3 Ubiquitin Ligases Mediate FREE1 and VPS23A Degradation to Modulate Abscisic Acid Signaling. DOI: 10.1105/tpc.20.00267 ; PMID: 32753431
- SINAT E3 ligases regulate the stability of the ESCRT component FREE1 in response to iron deficiency in plants. DOI: 10.1111/jipb.13005 ; PMID: 32786047
- Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins. DOI: 10.1105/tpc.016055 ; PMID: 14671022
- Repertoire of plant RING E3 ubiquitin ligases revisited: New groups counting gene families and single genes. DOI: 10.1371/journal.pone.0203442 ; PMID: 30169501
Gene Resources
- UniProt: B3LF90
- EMBL: BT033078
- AlphaFoldDB: B3LF90
- EnsemblPlants: AT4G27880.1
- Gramene: AT4G27880.1
- KEGG: ath:AT4G27880
- Orthologous matrix: CTYSMYP
- ExpressionAtlas: AT4G27880
- InterPro: IPR001841, IPR008974, IPR013010
- PANTHER: PTHR10315, PTHR10315:SF145
- SUPFAM: SSF49599, SSF57850
- PROSITE: PS50089, PS51081
- Gene3D: 2.60.210.10, 3.30.40.10
- OrthoDB: B3LF90
- SWISS-MODEL: B3LF90
- Conserved Domain Database: cd03829, cd16571
Sequences
cDNA Sequence
- >AT4G27880.1
GAACGGTTCAGATTTGATCTTTCTTCTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCAGTTTCAGAGATCAAAAGAGACCAACGAAGAAAAAAGCACCGCTTTTGCAGAATCGGTGACGATAGAAAGAGAAAGACAGAGAGAGAGGGAGGGTTAGAGAGTCAGGGGCTATTTGATTCCCCTGGAAAATTTCAGATATTTGTTTCTTCATCTTCTTTCCTTATTTCTCTCTTTCTCGTTTTTACCAGATTTGTCTTACGAATCAATTCTCAAAGATACCCAAAAGTGGTAGGGAAGCAAAGTACTGTTTTATTTTGCTTTTGATTCTATCAAAATCAGCGGTGAAAGAAAGGAATTTTTTTTATTATCAGAGAAAGAGAGATTCTTGATAATCGAATAGACCTAGATTTTTTTTTGAATTTAGGGCTTTTTTGATTTTTGAGAAATTGATTGTGGTAATGGAGACAGATAGTATGGAGTGCGTCTCATCTACGGGTAATGAGATCCATCAGAATGGTAATGGCCACCAATCTTACCAATTCTCTTCGACGAAGACTCACGGCGGAGCCGCTGCTGCCGCCGTCGTTACCAATATTGTTGGCCCAACAGCAACTGCTCCGGCCACTAGCGTGTATGAGCTTCTGGAGTGCCCTGTCTGTACCTATTCTATGTATCCTCCTATCCATCAGTGTCATAATGGACATACATTGTGCTCGACCTGTAAAGTGAGGGTTCATAACAGGTGTCCCACATGTAGACAAGAACTTGGAGATATTAGATGTTTAGCTCTTGAGAAAGTAGCCGAGTCGCTTGAGCTGCCTTGCAAGTTTTACAATCTGGGATGTCCTGAGATCTTTCCTTACTACAGCAAACTGAAGCACGAGTCTCTCTGTAACTTCAGACCTTACAGTTGTCCTTATGCTGGTTCGGAGTGTGGTATCGTAGGGGACATCCCTTTTCTTGTAGCCCATCTCAGGGATGATCATAAAGTTGACATGCACGCTGGTTCCACTTTTAACCACCGCTATGTCAAATCCAATCCGCGTGAAGTAGAGAACGCTACTTGGATGCTAACCGTATTCCATTGCTTTGGGCAGTACTTCTGCCTCCATTTCGAAGCGTTCCAGCTTGGGATGGGTCCAGTATACATGGCATTCCTGAGATTCATGGGGGACGAGGAAGATGCACGGAGCTACAGCTACAGCTTAGAAGTGGGAGGCAGTGGGAGGAAGCTAACATGGGAAGGAACCCCAAGAAGCATCAGAGATAGCCACAGGAAAGTAAGAGACAGCAACGACGGTCTCATCATCCAAAGAAACATGGCTCTCTTTTTCTCCGGTGGAGACAGGAAAGAGCTTAAACTTAGAGTCACTGGTAAAATCTGGAAAGAGCAACACAGTCCAGATTCTGGACTTTCCATACCAAACCTATCTTCTTCCTGATCATTCTTTTATCTTTTTGTTTTTTCTCTCTTTGAGAAGGAATGTTGTATGATGATTCGTTTGCACTCTTCTTCTTTGTCTGTATCTAAAACATATCATGAATGAATGTTTCATCTTATAGTCTCATATTTTGGCA
CDS Sequence
Protein Sequence