Information report for AT4G27690
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- GO:0042147 — involved in — retrograde transport, endosome to Golgi
- GO:0005622 — located in — intracellular anatomical structure
- GO:0006886 — involved in — intracellular protein transport
- GO:0005768 — is active in — endosome
- GO:0005829 — located in — cytosol
- GO:0030904 — part of — retromer complex
- GO:0009507 — located in — chloroplast
Functional Keywords
Literature and News
- Plant retromer, localized to the prevacuolar compartment and microvesicles in Arabidopsis, may interact with vacuolar sorting receptors. DOI: 10.1105/tpc.105.035907 ; PMID: 16582012
- AtVPS29, a putative component of a retromer complex, is required for the efficient sorting of seed storage proteins. DOI: 10.1093/pcp/pcj103 ; PMID: 16926167
- The retromer protein VPS29 links cell polarity and organ initiation in plants. DOI: 10.1016/j.cell.2007.08.040 ; PMID: 17889650
- Mechanisms governing the endosomal membrane recruitment of the core retromer in Arabidopsis. DOI: 10.1074/jbc.M112.440503 ; PMID: 23362252
- Vacuolar Protein Sorting 26C encodes an evolutionarily conserved large retromer subunit in eukaryotes that is important for root hair growth in Arabidopsis thaliana. DOI: 10.1111/tpj.13880 ; PMID: 29495075
- Combined Proteomic and Metabolomic Profiling of the Arabidopsis thaliana vps29 Mutant Reveals Pleiotropic Functions of the Retromer in Seed Development. DOI: 10.3390/ijms20020362 ; PMID: 30654520
- SINAT E3 Ubiquitin Ligases Mediate FREE1 and VPS23A Degradation to Modulate Abscisic Acid Signaling. DOI: 10.1105/tpc.20.00267 ; PMID: 32753431
- The retromer protein VPS29 links cell polarity and organ initiation in plants. DOI: 10.1016/j.cell.2007.08.040 ; PMID: 17889650
Gene Resources
- UniProt: F4JJR0
- EMBL: CP002687
- AlphaFoldDB: F4JJR0
- EnsemblPlants: AT4G27690.2
- Gramene: AT4G27690.2
- Orthologous matrix: CEIEVAL
Sequences
cDNA Sequence
- >AT4G27690.2
ATTTCGTTTGTTACTTTTCTTGCCTTTTCCGTCGATCTTCTTCTCCAACACAACAACAATCAGATTTGCTTGATTCAATTACGCTCTTAACATCAGCTTGGAAGGTTCCCATGAAGAAAGAAAATGGTCAGACGGCTCTGGTGCCTCTGTTCCATAGTCAAGACACTATTTCCGGGAAGGTTTGCATTGAACCATATCAAGGGAAAAAGGTGGAGCATAATGGTGTAAAAGTTGAGCTTCTTGGTCAAATAGAAATGTACTTTGACAGAGGAAACTTCTATGATTTCACTTCCTTGGTTCGTGAACTGGATGTACCTGGAGAAATATACGAAAGGAAGACATACCCTTTTGAATTTCCTACTGTGGAGATGCCATACGAGACATACAATGGTGTGAATGTGCGGCTAAGATATGTCCTCAAAGTAACCGTCACTCGTGGCTACGCTGGAAGCATCTTGGAATACCAGGAGCTTGTGGTACGGAACTACGCTCCACTTCCTGATATTAATAACAGCATCAAGATGGAAGTTGGAATTGAGGATTGCCTGCACATCGAGTTTGAGTACAATAAAAGCAAGTATCACCTAAAAGATGTCATCCTTGGGAAAATATATTTTCTTCTTGTGAGAATCAAGATGAAGAATATGGATCTTGAGATCAGACGGCGGGAATCAACAGGTGCAGGTGCTAATACTCATGTCGAGACAGAAACTCTTGCAAAATTTGAGTTGATGGATGGAACTCCAGTTAGAGGTGAATCGATACCTGTAAGACTGTTTCTGGCCCCATATGATCTTACACCAACGCATCGCAACATCAACAACAAATTCAGCGTCAAGTATTATCTGAATCTTGTACTGGTAGATGAAGAGGATCGCCGATACTTCAAGCAGCAAGAAATCACGTTGTATAGGTTGAAGGAAGACGCATCATCTTGATGATAATAACTACTGTAAGGATTCTCATTATCCTTTTGAGACTTTTTTTGTAAAAAGCTTTAGACTTTGTGTACTCAGATTGTTATTTGGGTCGGTACTTAGAATGAAGTTTTAACAGTACTTGTTTAGTTTGTTCATCAATCAAGTTCCTTTTCTCTGG - >AT4G27690.1
ATTTCGTTTGTTACTTTTCTTGCCTTTTCCGTCGATCTTCTTCTCCAACACAACAACAATCAGATTTGCTTGATTCAATTACGCTCTTAACATCAGCTTGGAAGGTTCCCATGAAGAAAGAAAATGGTCAGACGGCTCTGGTGCCTCTGTTCCATAGTCAAGACACTATTTCCGGGAAGGTTTGCATTGAACCATATCAAGGGAAAAAGGTGGAGCATAATGGTGTAAAAGTTGAGCTTCTTGGTCAAATAGAAATGTACTTTGACAGAGGAAACTTCTATGATTTCACTTCCTTGGTTCGTGAACTGGATGTACCTGGAGAAATATACGAAAGGAAGACATACCCTTTTGAATTTCCTACTGTGGAGATGCCATACGAGACATACAATGGTGTGAATGTGCGGCTAAGATATGTCCTCAAAGTAACCGTCACTCGTGGCTACGCTGGAAGCATCTTGGAATACCAGGAGCTTGTGGTACGGAACTACGCTCCACTTCCTGATATTAATAACAGCATCAAGATGGAAGTTGGAATTGAGGATTGCCTGCACATCGAGTTTGAGTACAATAAAAGCAAGTATCACCTAAAAGATGTCATCCTTGGGAAAATATATTTTCTTCTTGTGAGAATCAAGATGAAGAATATGGATCTTGAGATCAGACGGCGGGAATCAACAGGTGCAGGTGCTAATACTCATGTCGAGACAGAAACTCTTGCAAAATTTGAGTTGATGGATGGAACTCCAGTTAGAGGTGAATCGATACCTGTAAGACTGTTTCTGGCCCCATATGATCTTACACCAACGCATCGCAACATCAACAACAAATTCAGCGTCAAGTATTATCTGAATCTTGTACTGGTAGATGAAGAGGATCGCCGATACTTCAAGCAGCAAGAAATCACGTTGTATAGGTTGAAGGAAGACGCATCATCTTGATGATAATAACTACTGTAAGGATTCTCATTATCCTTTTGAGACTTTTTTTGTAAAAAGCTTTAGACTTTGTGTACTCAGATTGTTATTTGGGTCGGTACTTAGAATGAAGTTTTAACAGTACTTGTTTAGTTTGTTCATCAATCAAGTTCCTTTTCTCTGG
CDS Sequence
Protein Sequence