Gene Details:
- Gene ID: AT4G27490
- Gene Symbol: RRP41L
- Gene Name: RRP41 like
- Description: 3-5-exoribonuclease family protein;(source:Araport11)
- TAIR Accession: locus:2124024
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Plant Ontology Annotations:
- PO:0000003 — whole plant — planta entera (Spanish, exact), 植物体全体 (Japanese, exact), clonal colony (related), colony (related), bush (narrow), frutex (narrow), frutices (narrow), gametophyte (narrow), herb (narrow), liana (narrow), prothalli (narrow), prothallium (narrow), prothallus (narrow), seedling (narrow), shrub (narrow), sporophyte (narrow), suffrutex (narrow), suffrutices (narrow), tree (narrow), vine (narrow), woody clump (narrow), genet (broad), ramet (broad)
- PO:0000014 — rosette leaf — hoja en roseta (Spanish, exact), ロゼット葉 (Japanese, exact)
- PO:0009001 — fruit — frucht (exact, German), fruto (exact, Spanish), 果実 (exact, Japanese), coenocarp (narrow), syncarp (narrow), aggregate fruit (broad), compound fruit (broad), dehiscent fruit (broad), diaspore (broad), indehiscent fruit (broad), multiple fruit (broad), propagule (broad)
- PO:0009010 — seed — semilla (Spanish, exact), 種子 (Japanese, exact), pyrene (narrow), diaspore (broad)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
Gene Ontology:
- GO:0000176 — part of — nuclear exosome (RNase complex)
- GO:0005634 — located in — nucleus
- GO:0071028 — involved in — nuclear mRNA surveillance
- GO:0005730 — is active in — nucleolus
- GO:0009507 — located in — chloroplast
- GO:0034427 — involved in — nuclear-transcribed mRNA catabolic process, exonucleolytic, 3-5
- GO:0016075 — involved in — rRNA catabolic process
- GO:0009845 — acts upstream of or within — seed germination
- GO:0005737 — located in — cytoplasm
- GO:0034475 — involved in — polyadenylation-dependent snoRNA 3-end processing
- GO:0008408 — enables — 3-5 exonuclease activity
- GO:0000177 — part of — cytoplasmic exosome (RNase complex)
Function-related keywords:
- whole plant , rosette leaf , fruit , seed , flower
Literature:
- Comparative mapping of Brassica juncea and Arabidopsis thaliana using Intron Polymorphism (IP) markers: homoeologous relationships, diversification and evolution of the A, B and C Brassica genomes. DOI: 10.1186/1471-2164-9-113 ; PMID: 18315867
- Genome-based analysis of Chlamydomonas reinhardtii exoribonucleases and poly(A) polymerases predicts unexpected organellar and exosomal features. DOI: 10.1534/genetics.107.086223 ; PMID: 18493045
- ribonucleases are key players in the control of plastid gene expression. DOI: 10.1093/jxb/err401 ; PMID: 22140236
- Modulation of plant development and chilling stress responses by alternative splicing events under control of the spliceosome protein SmEb in Arabidopsis. DOI: 10.1111/pce.14386 ; PMID: 35770732
Sequences:
cDNA Sequence
- >AT4G27490.7
TATGACTCCAGTTATTTGTGAGACTAAACTAGATTTGAATTTTGTTTCTTTTGTGAAAAATGCTTCTTTCAGTACTTCAAACTGGTGCTGTGAGTTCTGCTTCTGGTTCTGCTTATGCTGAGTTTGGGAACACTAAAGTTATTGTTTCAGTATTTGGGCCAAGGGAGAGTAAGAAAGCAATGGTTTATAGTGATGTAGGTAGATTGAATTGTAATGTTAGCTATACAAATTTTGCTTCCCCTACTCTTGGCCAGGGAACTGATCACAAAGAATATTCATCAATGCTTCACAAAGCATTGGAAGGTGTAATAATGATGGAGACGTTTCCAAAAACAACCGTTGATGTTTTTGCATTGGTTCTTGAATCTGGAGGAAGTGACCTCTCTGTTTTGATATCATGTGCTAGTCTTGCTTTAGCTGATGCCGGAATTATGATGTATGACCTTATCACAGCTGTTTCAGTGTCTTGCATAGGCAAAAGCCTTATGATAGACCCGGTTACAGAGGAGGAAGGATGTGAAGATGGCAGCTTTATGATGACGTGCATGCCATCTCGTTATGAAATCACTCAGCTAACCATCACTGGTGAATGGACAACACCTAATATCAACGAGGCAATGCAGCTTTGCTTGGATGCTAGTTCAAAACTTGGAGAGATCATGCGTGATTGTCTGAAACAGTCTGCCTCAGCTTCCGATGAATGAGCATAAATAACTATGATTTTGGATTGTAGCTCAGACTTGGTATGAAACCGGTTTTAGCTGTTATAGGTAAACGGATTTAGTCTAAACCTGTGTGTAGTTTAAACCGATGTATGTTTTCACATAAGATTTGATGGAACTAGATCTTTAGCTATGAAATGGATCCCAATTGCGAGTGGTATCAAAGACATACAGAATTTAAAGTAGGGAA - >AT4G27490.6
TATGACTCCAGTTATTTGTGAGACTAAACTAGATTTGAATTTTGTTTCTTTTGTGAAAAATGCTTCTTTCAGTACTTCAAACTGGTGCTGTGAGTTCTGCTTCTGGTTCTGCTTATGCTGAGTTTGGGAACACTAAAGTTATTGTTTCAGTATTTGGGCCAAGGGAGAGTAAGAAAGCAATGGTTTATAGTGATGTAGGTAGATTGAATTGTAATGTTAGCTATACAAATTTTGCTTCCCCTACTCTTGGCCAGGGAACTGATCACAAAGAATATTCATCAATGCTTCACAAAGCATTGGAAGGTGTAATAATGATGGAGACGTTTCCAAAAACAACCGTTGATGTTTTTGCATTGGTTCTTGAATCTGGAGGAAGTGACCTCTCTGTTTTGATATCATGTGCTAGTCTTGCTTTAGCTGATGCCGGAATTATGATGTATGACCTTATCACAGCTGTTTCAGTGTCTTGCATAGGCAAAAGCCTTATGATAGACCCGGTTACAGAGGAGGAAGGATGTGAAGATGGCAGCTTTATGATGACGTGCATGCCATCTCGTTATGAAATCACTCAGCTAACCATCACTGGTGAATGGACAACACCTAATATCAACGAGGCAATGCAGCTTTGCTTGGATGCTAGTTCAAAACTTGGAGAGATCATGCGTGATTGTCTGAAACAGTCTGCCTCAGCTTCCGATGAATGAGCATAAATAACTATGATTTTGGATTGTAGCTCAGACTTGGTATGAAACCGGTTTTAGCTGTTATAGGTAAACGGATTTAGTCTAAACCTGTGTGTAGTTTAAACCGATGTATGTTTTCACATAAGATTTGATGGAACTAGATCTTTAGCTATGAAATGGATCCCAATTGCGAGTGGTATCAAAGACATACAGAATTTAAAGTAGGGAA - >AT4G27490.1
TATGACTCCAGTTATTTGTGAGACTAAACTAGATTTGAATTTTGTTTCTTTTGTGAAAAATGCTTCTTTCAGTACTTCAAACTGGTGCTGTGAGTTCTGCTTCTGGTTCTGCTTATGCTGAGTTTGGGAACACTAAAGTTATTGTTTCAGTATTTGGGCCAAGGGAGAGTAAGAAAGCAATGGTTTATAGTGATGTAGGTAGATTGAATTGTAATGTTAGCTATACAAATTTTGCTTCCCCTACTCTTGGCCAGGGAACTGATCACAAAGAATATTCATCAATGCTTCACAAAGCATTGGAAGGTGTAATAATGATGGAGACGTTTCCAAAAACAACCGTTGATGTTTTTGCATTGGTTCTTGAATCTGGAGGAAGTGACCTCTCTGTTTTGATATCATGTGCTAGTCTTGCTTTAGCTGATGCCGGAATTATGATGTATGACCTTATCACAGCTGTTTCAGTGTCTTGCATAGGCAAAAGCCTTATGATAGACCCGGTTACAGAGGAGGAAGGATGTGAAGATGGCAGCTTTATGATGACGTGCATGCCATCTCGTTATGAAATCACTCAGCTAACCATCACTGGTGAATGGACAACACCTAATATCAACGAGGCAATGCAGCTTTGCTTGGATGCTAGTTCAAAACTTGGAGAGATCATGCGTGATTGTCTGAAACAGTCTGCCTCAGCTTCCGATGAATGAGCATAAATAACTATGATTTTGGATTGTAGCTCAGACTTGGTATGAAACCGGTTTTAGCTGTTATAGGTAAACGGATTTAGTCTAAACCTGTGTGTAGTTTAAACCGATGTATGTTTTCACATAAGATTTGATGGAACTAGATCTTTAGCTATGAAATGGATCCCAATTGCGAGTGGTATCAAAGACATACAGAATTTAAAGTAGGGAA - >AT4G27490.5
TATGACTCCAGTTATTTGTGAGACTAAACTAGATTTGAATTTTGTTTCTTTTGTGAAAAATGCTTCTTTCAGTACTTCAAACTGGTGCTGTGAGTTCTGCTTCTGGTTCTGCTTATGCTGAGTTTGGGAACACTAAAGTTATTGTTTCAGTATTTGGGCCAAGGGAGAGTAAGAAAGCAATGGTTTATAGTGATGTAGGTAGATTGAATTGTAATGTTAGCTATACAAATTTTGCTTCCCCTACTCTTGGCCAGGGAACTGATCACAAAGAATATTCATCAATGCTTCACAAAGCATTGGAAGGTGTAATAATGATGGAGACGTTTCCAAAAACAACCGTTGATGTTTTTGCATTGGTTCTTGAATCTGGAGGAAGTGACCTCTCTGTTTTGATATCATGTGCTAGTCTTGCTTTAGCTGATGCCGGAATTATGATGTATGACCTTATCACAGCTGTTTCAGTGTCTTGCATAGGCAAAAGCCTTATGATAGACCCGGTTACAGAGGAGGAAGGATGTGAAGATGGCAGCTTTATGATGACGTGCATGCCATCTCGTTATGAAATCACTCAGCTAACCATCACTGGTGAATGGACAACACCTAATATCAACGAGGCAATGCAGCTTTGCTTGGATGCTAGTTCAAAACTTGGAGAGATCATGCGTGATTGTCTGAAACAGTCTGCCTCAGCTTCCGATGAATGAGCATAAATAACTATGATTTTGGATTGTAGCTCAGACTTGGTATGAAACCGGTTTTAGCTGTTATAGGTAAACGGATTTAGTCTAAACCTGTGTGTAGTTTAAACCGATGTATGTTTTCACATAAGATTTGATGGAACTAGATCTTTAGCTATGAAATGGATCCCAATTGCGAGTGGTATCAAAGACATACAGAATTTAAAGTAGGGAA - >AT4G27490.2
TATGACTCCAGTTATTTGTGAGACTAAACTAGATTTGAATTTTGTTTCTTTTGTGAAAAATGCTTCTTTCAGTACTTCAAACTGGTGCTGTGAGTTCTGCTTCTGGTTCTGCTTATGCTGAGTTTGGGAACACTAAAGTTATTGTTTCAGTATTTGGGCCAAGGGAGAGTAAGAAAGCAATGGTTTATAGTGATGTAGGTAGATTGAATTGTAATGTTAGCTATACAAATTTTGCTTCCCCTACTCTTGGCCAGGGAACTGATCACAAAGAATATTCATCAATGCTTCACAAAGCATTGGAAGGTGTAATAATGATGGAGACGTTTCCAAAAACAACCGTTGATGTTTTTGCATTGGTTCTTGAATCTGGAGGAAGTGACCTCTCTGTTTTGATATCATGTGCTAGTCTTGCTTTAGCTGATGCCGGAATTATGATGTATGACCTTATCACAGCTGTTTCAGTGTCTTGCATAGGCAAAAGCCTTATGATAGACCCGGTTACAGAGGAGGAAGGATGTGAAGATGGCAGCTTTATGATGACGTGCATGCCATCTCGTTATGAAATCACTCAGCTAACCATCACTGGTGAATGGACAACACCTAATATCAACGAGGCAATGCAGCTTTGCTTGGATGCTAGTTCAAAACTTGGAGAGATCATGCGTGATTGTCTGAAACAGTCTGCCTCAGCTTCCGATGAATGAGCATAAATAACTATGATTTTGGATTGTAGCTCAGACTTGGTATGAAACCGGTTTTAGCTGTTATAGGTAAACGGATTTAGTCTAAACCTGTGTGTAGTTTAAACCGATGTATGTTTTCACATAAGATTTGATGGAACTAGATCTTTAGCTATGAAATGGATCCCAATTGCGAGTGGTATCAAAGACATACAGAATTTAAAGTAGGGAA - >AT4G27490.3
TATGACTCCAGTTATTTGTGAGACTAAACTAGATTTGAATTTTGTTTCTTTTGTGAAAAATGCTTCTTTCAGTACTTCAAACTGGTGCTGTGAGTTCTGCTTCTGGTTCTGCTTATGCTGAGTTTGGGAACACTAAAGTTATTGTTTCAGTATTTGGGCCAAGGGAGAGTAAGAAAGCAATGGTTTATAGTGATGTAGGTAGATTGAATTGTAATGTTAGCTATACAAATTTTGCTTCCCCTACTCTTGGCCAGGGAACTGATCACAAAGAATATTCATCAATGCTTCACAAAGCATTGGAAGGTGTAATAATGATGGAGACGTTTCCAAAAACAACCGTTGATGTTTTTGCATTGGTTCTTGAATCTGGAGGAAGTGACCTCTCTGTTTTGATATCATGTGCTAGTCTTGCTTTAGCTGATGCCGGAATTATGATGTATGACCTTATCACAGCTGTTTCAGTGTCTTGCATAGGCAAAAGCCTTATGATAGACCCGGTTACAGAGGAGGAAGGATGTGAAGATGGCAGCTTTATGATGACGTGCATGCCATCTCGTTATGAAATCACTCAGCTAACCATCACTGGTGAATGGACAACACCTAATATCAACGAGGCAATGCAGCTTTGCTTGGATGCTAGTTCAAAACTTGGAGAGATCATGCGTGATTGTCTGAAACAGTCTGCCTCAGCTTCCGATGAATGAGCATAAATAACTATGATTTTGGATTGTAGCTCAGACTTGGTATGAAACCGGTTTTAGCTGTTATAGGTAAACGGATTTAGTCTAAACCTGTGTGTAGTTTAAACCGATGTATGTTTTCACATAAGATTTGATGGAACTAGATCTTTAGCTATGAAATGGATCCCAATTGCGAGTGGTATCAAAGACATACAGAATTTAAAGTAGGGAA - >AT4G27490.4
TATGACTCCAGTTATTTGTGAGACTAAACTAGATTTGAATTTTGTTTCTTTTGTGAAAAATGCTTCTTTCAGTACTTCAAACTGGTGCTGTGAGTTCTGCTTCTGGTTCTGCTTATGCTGAGTTTGGGAACACTAAAGTTATTGTTTCAGTATTTGGGCCAAGGGAGAGTAAGAAAGCAATGGTTTATAGTGATGTAGGTAGATTGAATTGTAATGTTAGCTATACAAATTTTGCTTCCCCTACTCTTGGCCAGGGAACTGATCACAAAGAATATTCATCAATGCTTCACAAAGCATTGGAAGGTGTAATAATGATGGAGACGTTTCCAAAAACAACCGTTGATGTTTTTGCATTGGTTCTTGAATCTGGAGGAAGTGACCTCTCTGTTTTGATATCATGTGCTAGTCTTGCTTTAGCTGATGCCGGAATTATGATGTATGACCTTATCACAGCTGTTTCAGTGTCTTGCATAGGCAAAAGCCTTATGATAGACCCGGTTACAGAGGAGGAAGGATGTGAAGATGGCAGCTTTATGATGACGTGCATGCCATCTCGTTATGAAATCACTCAGCTAACCATCACTGGTGAATGGACAACACCTAATATCAACGAGGCAATGCAGCTTTGCTTGGATGCTAGTTCAAAACTTGGAGAGATCATGCGTGATTGTCTGAAACAGTCTGCCTCAGCTTCCGATGAATGAGCATAAATAACTATGATTTTGGATTGTAGCTCAGACTTGGTATGAAACCGGTTTTAGCTGTTATAGGTAAACGGATTTAGTCTAAACCTGTGTGTAGTTTAAACCGATGTATGTTTTCACATAAGATTTGATGGAACTAGATCTTTAGCTATGAAATGGATCCCAATTGCGAGTGGTATCAAAGACATACAGAATTTAAAGTAGGGAA
CDS Sequence
Protein Sequence