Information report for AT4G27280
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- GO:0005886 — located in — plasma membrane
- GO:0005509 — enables — calcium ion binding
- GO:0005515 — enables — protein binding
- GO:0071456 — acts upstream of or within — cellular response to hypoxia
- GO:0009733 — acts upstream of or within — response to auxin
- cmi1 — Shorter primary roots as a result of a smaller root meristem size.
Functional Keywords
Literature and News
- Cell cycle-regulated gene expression in Arabidopsis. DOI: 10.1074/jbc.M207570200 ; PMID: 12169696
- Analysis of EF-hand-containing proteins in Arabidopsis. DOI: 10.1186/gb-2002-3-10-research0056 ; PMID: 12372144
- Monitoring expression profiles of Arabidopsis gene expression during rehydration process after dehydration using ca 7000 full-length cDNA microarray. DOI: 10.1046/j.1365-313x.2003.01774.x ; PMID: 12795706
- Microarray analysis of E2Fa-DPa-overexpressing plants uncovers a cross-talking genetic network between DNA replication and nitrogen assimilation. DOI: 10.1242/jcs.00715 ; PMID: 12953064
- KIC, a novel Ca2+ binding protein with one EF-hand motif, interacts with a microtubule motor protein and regulates trichome morphogenesis. DOI: 10.1105/tpc.016600 ; PMID: 14688294
- A genomic analysis of the shade avoidance response in Arabidopsis. DOI: 10.1104/pp.103.034397 ; PMID: 14645734
- Comprehensive comparison of auxin-regulated and brassinosteroid-regulated genes in Arabidopsis. DOI: 10.1104/pp.103.034736 ; PMID: 15047898
- Plant body weight-induced secondary growth in Arabidopsis and its transcription phenotype revealed by whole-transcriptome profiling. DOI: 10.1104/pp.104.038844 ; PMID: 15194820
- and darkness-regulated Arabidopsis genes: a focus on calmodulin-like and XTH genes. DOI: 10.1111/j.1469-8137.2004.01238.x ; PMID: 15720654
- Functional genomics by integrated analysis of metabolome and transcriptome of Arabidopsis plants over-expressing an MYB transcription factor. DOI: 10.1111/j.1365-313X.2005.02371.x ; PMID: 15807784
- A guard-cell-specific MYB transcription factor regulates stomatal movements and plant drought tolerance. DOI: 10.1016/j.cub.2005.05.048 ; PMID: 16005291
- The zinc-finger protein Zat12 plays a central role in reactive oxygen and abiotic stress signaling in Arabidopsis. DOI: 10.1104/pp.105.068254 ; PMID: 16183833
- 12-oxo-phytodienoic acid triggers expression of a distinct set of genes and plays a role in wound-induced gene expression in Arabidopsis. DOI: 10.1104/pp.105.067058 ; PMID: 16258017
- Enhanced tolerance to environmental stress in transgenic plants expressing the transcriptional coactivator multiprotein bridging factor 1c. DOI: 10.1104/pp.105.070110 ; PMID: 16244138
- The Arabidopsis cold-responsive transcriptome and its regulation by ICE1. DOI: 10.1105/tpc.105.035568 ; PMID: 16214899
- ATR and ATM play both distinct and additive roles in response to ionizing radiation. DOI: 10.1111/j.1365-313X.2006.02931.x ; PMID: 17227549
- Analysis of transcription factor HY5 genomic binding sites revealed its hierarchical role in light regulation of development. DOI: 10.1105/tpc.106.047688 ; PMID: 17337630
- Integration of Arabidopsis thaliana stress-related transcript profiles, promoter structures, and cell-specific expression. DOI: 10.1186/gb-2007-8-4-r49 ; PMID: 17408486
- The SWI/SNF chromatin-remodeling gene AtCHR12 mediates temporary growth arrest in Arabidopsis thaliana upon perceiving environmental stress. DOI: 10.1111/j.1365-313X.2007.03185.x ; PMID: 17605754
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- Karrikins enhance light responses during germination and seedling development in Arabidopsis thaliana. DOI: 10.1073/pnas.0911635107 ; PMID: 20351290
- Iron-dependent modifications of the flower transcriptome, proteome, metabolome, and hormonal content in an Arabidopsis ferritin mutant. DOI: 10.1093/jxb/ert112 ; PMID: 23682113
- A novel Ca2+-binding protein that can rapidly transduce auxin responses during root growth. DOI: 10.1371/journal.pbio.3000085 ; PMID: 31295257
- Integrative Analysis from the Epigenome to Translatome Uncovers Patterns of Dominant Nuclear Regulation during Transient Stress. DOI: 10.1105/tpc.19.00463 ; PMID: 31519798
Gene Resources
- UniProt: A0A5S9XWQ3
- EMBL: CACSHJ010000095
- AlphaFoldDB: A0A5S9XWQ3
- EnsemblPlants: AT4G27280.1
- Gramene: AT4G27280.1
- KEGG: ath:AT4G27280
- Orthologous matrix: RCMIKEG
- ExpressionAtlas: AT4G27280
- InterPro: IPR002048, IPR011992, IPR018247
- PANTHER: PTHR47319, PTHR47319:SF29
- SUPFAM: SSF47473
- PROSITE: PS00018, PS50222
- Gene3D: 1.10.238.10
- OrthoDB: A0A5S9XWQ3
- SWISS-MODEL: A0A5S9XWQ3
Sequences
cDNA Sequence
- >AT4G27280.1
CAATCAAATAAACAAACTCAAGTCACTTGCCGATGAAAGTGGTGGAAATTTCCCATAAATAAACAAAGGAACAAACAAACAACTCCTCCATTTCCATTACTTTACTCTTTCTATTTCTTAATATAAACGGACGATTTTACCCTCCATCTCTCGCCGTTTTCACACTATGAGCTTTCCACATCCCTTTACGAAGTGACGATATTACCCCTAAAAGCGACCTTCCTCGAAGAAACCACATACCAACAATCTGAGAGATTAATCGCAATTTCCCAGACACGGGACCTTCCCTCATTAATCTTAGCTGGCTTCCATGGATGTTCCTTCTCAGAAATCCCAATTTCTCTTCCTTTATATTCTCATTCACTCCTCATTCTCCTCCTCAAATCAATAACAACGATAAAAAAACAAACCTTCCTTAACCAGAACCAAATTTCAGATTTTTAAACAACATAAGCTCTAATGGCGTCACCAAAGTCACCCACAAGACCAACCCAACAAAACCCACAACCCAATTTCCACGATTTTCTTCCTACCATGGCCGGAAACCTAGGCGGTGAAGGTCTGATCGGAGAGCTATGCAACGGCTTCGAGCTTTTGATGGACAGAGAGAAAGGTGTCATCACGTTCGAGAGTCTCCGACGTAACGCTGCGGCGGTTCTGGGTTTAGGAGATTTGACTGATGAAGATGTCCGGTGTATGATTAAAGAAGGTGATTTTGACTGCGACGGTGCGTTGAATCAGATGGAGTTTTGTGTGTTGATGTTTAGGCTTAGCCCTGATTTGATGGAAGCGTCGCGGTGTCTCGTCACGGAGGTCATTGAGGAGGAGTTTGGCTTCACGCGCCGGCATTGACACTGGAGAGATTTGGGATCCCTTCCTCTTTTATTTAATTCGATTCATTTGTTACCTTTTTCTTAATTTTTCCATTAATGTTACCATTCACATAATTCTTTTAATCATAGTACTTGATACTATTTTTACACTTCAGTTTATATCTTTGATCAGATGTGTTGAACATATATAAAATAAAGAAAAAAATTCATAAACTAGACTGGTGATGACTGTATCACAATATCGATTTGTAGCACACACAAAAAAATCATCATCCTTAAGCACTATCAATGATGTGTTGATTATAATGCTTAATCTTTCCATGAATAAAAGGAGATATGTTAATTAGGAGCTATCTAGTCAAGCTTTTACAATT
CDS Sequence
Protein Sequence