Gene Details:

• Gene ID: AT4G26690
• Gene Symbol: GDPDL3, GPDL2, MRH5, SHV3
• Gene Name: Glycerophosphodiester phosphodiesterase (GDPD) like 3, GLYCEROPHOSPHODIESTERASE-LIKE 2, MUTANT ROOT HAIR 5, SHAVEN 3
• Description: PLC-like phosphodiesterase family protein;(source:Araport11)
• TAIR Accession: locus:2116377
• Genome: Araport11_genome_release
• Species: Arabidopsis thaliana

Transcripts:

• AT4G26690.1

Plant Ontology Annotations:

• PO:0000037  — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
• PO:0008019  — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
• PO:0009006  — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
• PO:0009009  — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
• PO:0009025  — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
• PO:0009029  — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
• PO:0009031  — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
• PO:0009046  — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
• PO:0009052  — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
• PO:0020030  — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
• PO:0020038  — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
• PO:0020100  — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
• PO:0020137  — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
• PO:0025022  — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
• PO:0025281  — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
• PO:0000013  — cauline leaf — hoja caulinar (Spanish, exact), 茎生葉、茎葉 (Japanese, exact)
• PO:0000014  — rosette leaf — hoja en roseta (Spanish, exact), ロゼット葉 (Japanese, exact)
• PO:0000256  — root hair cell — célula del pelo de la raíz (Spanish, exact), 根毛細胞 (Japanese, exact)
• PO:0000282  — trichome — tricoma (Spanish, exact), 毛茸、糸状体、毛 (Japanese, exact), seta (related), setae (related), capilli (narrow), capillus (narrow), cilia (narrow), cilium (narrow), glochid (narrow), glochidia (narrow), glochidium (narrow), hair (narrow), lepides (narrow), lepis (narrow), non-secretory trichome (narrow), scale (narrow), squama (narrow), squamae (narrow), squamella (narrow), squamellae (narrow), squamule (narrow), barb trichome (broad), bristle (broad)
• PO:0009001  — fruit — frucht (exact, German), fruto (exact, Spanish), 果実 (exact, Japanese), coenocarp (narrow), syncarp (narrow), aggregate fruit (broad), compound fruit (broad), dehiscent fruit (broad), diaspore (broad), indehiscent fruit (broad), multiple fruit (broad), propagule (broad)
• PO:0009047  — stem — caña (Spanish, exact), culm (exact), eje primario (Spanish, exact), primary axis (exact), primary stem (exact), tallo (Spanish, exact), tronco (Spanish, exact), 茎 (Japanese, exact), bole (narrow), cane (narrow), caudex (narrow), caudices (narrow), core (narrow), primocane (narrow), scape (narrow), stalk (narrow), trunk (narrow)

Gene Ontology:

• GO:0010442  — acts upstream of or within — guard cell morphogenesis
• GO:0005886  — located in — plasma membrane
• GO:0009932  — acts upstream of or within — cell tip growth
• GO:0052541  — acts upstream of or within — plant-type cell wall cellulose metabolic process
• GO:0016301  — enables — kinase activity
• GO:0010053  — acts upstream of or within — root epidermal cell differentiation
• GO:0005829  — located in — cytosol
• GO:0048765  — acts upstream of or within — root hair cell differentiation
• GO:0016020  — located in — membrane
• GO:0008889  — enables — glycerophosphodiester phosphodiesterase activity
• GO:0006629  — involved in — lipid metabolic process
• GO:0010026  — acts upstream of or within — trichome differentiation

Germplasm Phenotype:

• RIKEN 15-1096-1  — Homozygotes: Tip growth in almost all root hair cells was blocked due to rupture of the tip.
• SALK_024208  — Homozygotes: Tip growth in almost all root hair cells was blocked due to rupture of the tip.
• SALK_056562  — Short, wide burst hairs
• shv3-1  — Homozygotes: Tip growth in almost all root hair cells was blocked due to rupture of the tip.
• shv3-2;svl1-1  — Increased anthocyanin accumulation. Collapsed trichomes.Brown discoloration around endodermis in the hypocotyl and root due to ectopic lignification. Guard cells are larger than WT due to swollen ventral sides. Swollen hypocotyl epidermis with uneven surface. Four-day old dark-grown seedlings have shorter, thicker hypocotyls than WT. Cell wall analysis: reduced crystalline cellulose. Increased starch content. Neutral sugar content is same as WT. Increases protein. Increased uronic acid and decreased amount of methyl esterification.

Function-related keywords:

• shoot axis apex ,  leaf lamina base ,  shoot system ,  plant embryo ,  vascular leaf ,  stamen ,  sepal ,  flower ,  inflorescence flower pedicel ,  cotyledon ,  petiole ,  hypocotyl ,  leaf apex ,  collective leaf structure ,  pollen ,  cauline leaf ,  rosette leaf ,  root hair cell ,  trichome ,  fruit ,  stem ,  petiole ,  hypocotyl

Literature:

• Prediction of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A genomic analysis.   DOI:  10.1104/pp.010884 ;  PMID:  12068095
• Genomic analysis of the unfolded protein response in Arabidopsis shows its connection to important cellular processes.   DOI:  10.1105/tpc.007609 ;  PMID:  12566592
• Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis.   DOI:  10.1104/pp.103.021170 ;  PMID:  12805588
• Analysis of the root-hair morphogenesis transcriptome reveals the molecular identity of six genes with roles in root-hair development in Arabidopsis.   DOI:  10.1111/j.1365-313X.2005.02609.x ;  PMID:  16367956
• A quantitative analysis of Arabidopsis plasma membrane using trypsin-catalyzed (18)O labeling.   DOI:  10.1074/mcp.M500414-MCP200 ;  PMID:  16635983
• The Arabidopsis thaliana transcriptome in response to Agrobacterium tumefaciens.   DOI:  10.1094/MPMI-19-0665 ;  PMID:  16776300
• The glycerophosphoryl diester phosphodiesterase-like proteins SHV3 and its homologs play important roles in cell wall organization.   DOI:  10.1093/pcp/pcn120 ;  PMID:  18718934
• Transcriptome analysis of Arabidopsis wild-type and gl3-sst sim trichomes identifies four additional genes required for trichome development.   DOI:  10.1093/mp/ssp037 ;  PMID:  19626137
• Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana.   DOI:  10.1093/molbev/msq204 ;  PMID:  20736450
• Characterization of the Arabidopsis glycerophosphodiester phosphodiesterase (GDPD) family reveals a role of the plastid-localized AtGDPD1 in maintaining cellular phosphate homeostasis under phosphate starvation.   DOI:  10.1111/j.1365-313X.2011.04538.x ;  PMID:  21323773
• Cellulose Deficiency Is Enhanced on Hyper Accumulation of Sucrose by a H+-Coupled Sucrose Symporter.   DOI:  10.1104/pp.16.00302 ;  PMID:  27013021
• A dual mechanism of cellulose deficiency in shv3svl1.   DOI:  10.1080/15592324.2016.1218108 ;  PMID:  27494413
• Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis.   DOI:  10.1074/mcp.M600429-MCP200 ;  PMID:  17317660
• A sub-proteome of Arabidopsis thaliana mature stems trapped on Concanavalin A is enriched in cell wall glycoside hydrolases.   DOI:  10.1093/jxb/erm082 ;  PMID:  17526915
• A high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome.   DOI:  10.1074/mcp.M700099-MCP200 ;  PMID:  17644812
• The glycerophosphoryl diester phosphodiesterase-like proteins SHV3 and its homologs play important roles in cell wall organization.   DOI:  10.1093/pcp/pcn120 ;  PMID:  18718934
• Analysis of protein complexes in Arabidopsis leaves using size exclusion chromatography and label-free protein correlation profiling.   DOI:  10.1016/j.jprot.2017.06.004 ;  PMID:  28627464

Sequences: