Gene Details:
- Gene ID: AT4G26150
- Gene Symbol: CGA1, GATA22, GNL
- Gene Name: cytokinin-responsive gata factor 1, GATA TRANSCRIPTION FACTOR 22, GNC-LIKE
- Description: cytokinin-responsive gata factor 1;(source:Araport11)
- TAIR Accession: locus:2120845
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Plant Ontology Annotations:
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
Gene Ontology:
- GO:0009736 — involved in — cytokinin-activated signaling pathway
- GO:0090693 — involved in — plant organ senescence
- GO:0009416 — acts upstream of or within — response to light stimulus
- GO:0009735 — involved in — response to cytokinin
- GO:0000976 — enables — transcription cis-regulatory region binding
- GO:2000028 — involved in — regulation of photoperiodism, flowering
- GO:1902326 — involved in — positive regulation of chlorophyll biosynthetic process
- GO:0005634 — located in — nucleus
- GO:0010029 — involved in — regulation of seed germination
- GO:0009739 — involved in — response to gibberellin
- GO:0080050 — involved in — regulation of seed development
- GO:0043610 — involved in — regulation of carbohydrate utilization
- GO:0009910 — acts upstream of or within — negative regulation of flower development
- GO:0009658 — involved in — chloroplast organization
- GO:0007623 — acts upstream of or within — circadian rhythm
- GO:0006355 — involved in — regulation of DNA-templated transcription
- GO:0009740 — acts upstream of or within — gibberellic acid mediated signaling pathway
- GO:0009938 — involved in — negative regulation of gibberellic acid mediated signaling pathway
- GO:0010167 — involved in — response to nitrate
- GO:0009416 — involved in — response to light stimulus
- GO:0010187 — acts upstream of or within — negative regulation of seed germination
- GO:0008270 — enables — zinc ion binding
- GO:0010114 — involved in — response to red light
- GO:0010468 — acts upstream of or within — regulation of gene expression
- GO:0009733 — involved in — response to auxin
- GO:0009735 — acts upstream of or within — response to cytokinin
- GO:0003700 — enables — DNA-binding transcription factor activity
- GO:0010151 — involved in — chloroplast elongation
- GO:0010380 — acts upstream of or within — regulation of chlorophyll biosynthetic process
- GO:0005515 — enables — protein binding
Germplasm Phenotype:
- CS71765 — Light-green leaves; reduction in overall chlorophyll levels and in hypocotyl chloroplast size. Reduced shoot growth, early flowering, and fewer rosette leaves.
- CS71766 — Pale leaves, small rosette with fewer leaves, early flowering. Reduced chlorophyll levels, decreases in chloroplast size and NPQ (nonphotochemical energy quenching).
Function-related keywords:
- shoot axis apex , leaf lamina base , shoot system , plant embryo , vascular leaf , sepal , flower , cotyledon , petiole , collective leaf structure
Literature:
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- Interaction of a GATA factor with cis-acting elements involved in light regulation of nuclear genes encoding chloroplast glyceraldehyde-3-phosphate dehydrogenase in Arabidopsis. DOI: 10.1016/s0006-291x(02)02892-9 ; PMID: 12504119
- ABA activates ADPR cyclase and cADPR induces a subset of ABA-responsive genes in Arabidopsis. DOI: 10.1111/j.1365-313X.2004.02055.x ; PMID: 15086800
- The GATA family of transcription factors in Arabidopsis and rice. DOI: 10.1104/pp.103.037788 ; PMID: 15084732
- Genomic analysis of the nitrate response using a nitrate reductase-null mutant of Arabidopsis. DOI: 10.1104/pp.104.044610 ; PMID: 15333754
- Genome-wide reprogramming of primary and secondary metabolism, protein synthesis, cellular growth processes, and the regulatory infrastructure of Arabidopsis in response to nitrogen. DOI: 10.1104/pp.104.047019 ; PMID: 15375205
- Combinatorial microarray analysis revealing arabidopsis genes implicated in cytokinin responses through the His->Asp Phosphorelay circuitry. DOI: 10.1093/pcp/pci033 ; PMID: 15695462
- Immediate-early and delayed cytokinin response genes of Arabidopsis thaliana identified by genome-wide expression profiling reveal novel cytokinin-sensitive processes and suggest cytokinin action through transcriptional cascades. DOI: 10.1111/j.1365-313X.2005.02530.x ; PMID: 16212609
- Genetic analysis of Arabidopsis GATA transcription factor gene family reveals a nitrate-inducible member important for chlorophyll synthesis and glucose sensitivity. DOI: 10.1111/j.1365-313X.2005.02568.x ; PMID: 16262716
- Gene expression programs during shoot, root, and callus development in Arabidopsis tissue culture. DOI: 10.1104/pp.106.081240 ; PMID: 16648215
- Different plant hormones regulate similar processes through largely nonoverlapping transcriptional responses. DOI: 10.1016/j.cell.2006.05.050 ; PMID: 16901781
- Genome-wide expression profiling of ARABIDOPSIS RESPONSE REGULATOR 7(ARR7) overexpression in cytokinin response. DOI: 10.1007/s00438-006-0177-x ; PMID: 17061125
- Temporal responses of transcripts, enzyme activities and metabolites after adding sucrose to carbon-deprived Arabidopsis seedlings. DOI: 10.1111/j.1365-313X.2006.02979.x ; PMID: 17217462
- Conservation, convergence, and divergence of light-responsive, circadian-regulated, and tissue-specific expression patterns during evolution of the Arabidopsis GATA gene family. DOI: 10.1104/pp.106.090761 ; PMID: 17208962
- Genome-wide gene expression analysis reveals a critical role for CRYPTOCHROME1 in the response of Arabidopsis to high irradiance. DOI: 10.1104/pp.107.098293 ; PMID: 17478635
- GeBP and GeBP-like proteins are noncanonical leucine-zipper transcription factors that regulate cytokinin response in Arabidopsis. DOI: 10.1104/pp.107.110270 ; PMID: 18162594
- Two GATA transcription factors are downstream effectors of floral homeotic gene action in Arabidopsis. DOI: 10.1104/pp.107.115634 ; PMID: 18417639
- The GATA-type transcription factors GNC and GNL/CGA1 repress gibberellin signaling downstream from DELLA proteins and PHYTOCHROME-INTERACTING FACTORS. DOI: 10.1101/gad.594910 ; PMID: 20844019
- GNC and CGA1 modulate chlorophyll biosynthesis and glutamate synthase (GLU1/Fd-GOGAT) expression in Arabidopsis. DOI: 10.1371/journal.pone.0026765 ; PMID: 22102866
- Cross-repressive interactions between SOC1 and the GATAs GNC and GNL/CGA1 in the control of greening, cold tolerance, and flowering time in Arabidopsis. DOI: 10.1104/pp.113.219238 ; PMID: 23739688
- Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain. DOI: 10.1104/pp.114.246660 ; PMID: 25077795
- LLM-Domain B-GATA Transcription Factors Promote Stomatal Development Downstream of Light Signaling Pathways in Arabidopsis thaliana Hypocotyls. DOI: 10.1105/tpc.15.00783 ; PMID: 26917680
- Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling. DOI: 10.1104/pp.16.01368 ; PMID: 28193764
- Simultaneous but spatially different regulation of non-photosynthetic callus formation and photosynthetic root development after shoot removal. DOI: 10.1080/15592324.2017.1338999 ; PMID: 28594268
- LLM-Domain B-GATA Transcription Factors Play Multifaceted Roles in Controlling Greening in Arabidopsis. DOI: 10.1105/tpc.17.00947 ; PMID: 29453227
- Coordination of Chloroplast Development through the Action of the GNC and GLK Transcription Factor Families. DOI: 10.1104/pp.18.00414 ; PMID: 30002259
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- Immediate-early and delayed cytokinin response genes of Arabidopsis thaliana identified by genome-wide expression profiling reveal novel cytokinin-sensitive processes and suggest cytokinin action through transcriptional cascades. DOI: 10.1111/j.1365-313X.2005.02530.x ; PMID: 16212609
Sequences:
cDNA Sequence
- >AT4G26150.1
GTGGTCTATATATTGCCTTTTAAAAGGGTCAAACATAGTATAGCTTGGATCCTTCTTTACTTGTCCCTGATCTCTCCTAATCTCTCGTCTTCCCTCTCTTTTGTGCTTCATCGATCTCTATCGGTCATGGGTTCCAATTTTCATTACACAATAGATCTCAATGAAGATCAAAACCATCAGCCTTTTTTCGCTTCTCTTGGATCCTCTCTTCATCATCATCTACAACAACAACAACAACAACAACAACATTTTCATCACCAAGCTTCTTCTAATCCCTCTTCTTTGATGTCACCGTCTCTTTCCTACTTTCCTTTCTTGATAAACTCTCGCCAAGATCAAGTATATGTTGGGTACAACAATAACACTTTTCATGATGTTCTTGATACCCATATCTCCCAACCTCTCGAGACCAAGAACTTTGTATCTGATGGTGGTTCATCATCAAGTGATCAAATGGTGCCCAAGAAGGAGACACGACTAAAATTGACGATAAAGAAGAAAGATAATCATCAAGACCAAACCGATCTTCCTCAATCCCCAATAAAAGACATGACAGGAACTAACTCGCTCAAGTGGATATCTTCGAAGGTGAGATTAATGAAGAAGAAAAAGGCGATTATTACCACCAGCGACAGCAGCAAACAACACACTAATAACGACCAATCCTCAAACCTAAGCAATTCGGAAAGACAGAATGGTTATAACAACGATTGCGTGATTAGGATTTGCTCCGATTGTAACACAACCAAGACTCCTCTTTGGAGAAGTGGTCCGAGAGGTCCCAAGTCTCTTTGTAACGCTTGTGGAATAAGGCAAAGGAAGGCCAGGCGGGCCGCTATGGCCACGGCAACCGCAACCGCAGTCTCTGGCGTATCCCCACCGGTCATGAAGAAGAAGATGCAAAACAAGAACAAGATATCAAATGGAGTTTATAAAATCTTATCTCCTTTGCCCCTAAAGGTAAACACGTGTAAGAGAATGATCACACTAGAGGAGACCGCATTAGCCGAGGATTTGGAGACCCAGAGCAACTCCACGATGTTATCATCTTCAGACAATATCTATTTCGATGATCTAGCATTACTGTTGAGCAAAAGTTCAGCTTATCAGCAAGTTTTCCCTCAAGATGAGAAGGAGGCTGCCATTTTACTAATGGCTCTATCGCACGGAATGGTTCACGGGTGATTATTTTAAGTATTTTAATTATAACTCGCATGCTTAAGAAATAAAATATAAACCATACCATAAGCCCTCATAGCTAGTAATATCTAGATTATTTGATACATGAAATTTTGTTGCGGTGATATATTAATTTCAGTCAGTCCAACTTTATTATAAGAGAGTGTTGGGGTTTAGTAGATTTTGTATGAAAGGCTTGTATTTTATTTTTTATGGAACTTGATATCCCAACAATGTGGTTGTTCTTGTTCATTCGCATGTTTTTTGTGTTTCTAAGTTTTGAGAGTTGATATAAGAATTACTTTAATTTGTCAAGATCTCGTCAAGTGTTTATACTTGATGAAAATCTTTTGGGGATCAAAACGGTTTGAAGTAAAGATCGTACTGTCGTACTGGTGTCTGTAGATTGATATTAAACTCGAACAACATGATTATTGTAATATACCTTAACTA
CDS Sequence
Protein Sequence