Information report for AT4G25490
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- GO:0045893 — acts upstream of or within — positive regulation of DNA-templated transcription
- GO:0005515 — enables — protein binding
- GO:0009409 — acts upstream of or within — response to cold
- GO:0009631 — acts upstream of or within — cold acclimation
- GO:0009414 — acts upstream of or within — response to water deprivation
- GO:0005634 — located in — nucleus
- GO:0003677 — enables — DNA binding
- GO:0003700 — enables — DNA-binding transcription factor activity
Functional Keywords
Literature and News
- The sfr6 mutation in Arabidopsis suppresses low-temperature induction of genes dependent on the CRT/DRE sequence motif. DOI: 10.1105/tpc.11.5.875 ; PMID: 10330472
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- An Arabidopsis mutation in translation elongation factor 2 causes superinduction of CBF/DREB1 transcription factor genes but blocks the induction of their downstream targets under low temperatures. DOI: 10.1073/pnas.112040099 ; PMID: 12032361
- Heterology expression of the Arabidopsis C-repeat/dehydration response element binding factor 1 gene confers elevated tolerance to chilling and oxidative stresses in transgenic tomato. DOI: 10.1104/pp.003442 ; PMID: 12114563
- Arabidopsis transcriptome profiling indicates that multiple regulatory pathways are activated during cold acclimation in addition to the CBF cold response pathway. DOI: 10.1105/tpc.003483 ; PMID: 12172015
- Light signalling mediated by phytochrome plays an important role in cold-induced gene expression through the C-repeat/dehydration responsive element (C/DRE) in Arabidopsis thaliana. DOI: 10.1046/j.1365-313x.2002.01249.x ; PMID: 12148528
- Transcription factor CBF4 is a regulator of drought adaptation in Arabidopsis. DOI: 10.1104/pp.006478 ; PMID: 12376631
- Tomato plants ectopically expressing Arabidopsis CBF1 show enhanced resistance to water deficit stress. DOI: 10.1104/pp.006783 ; PMID: 12376629
- OsDREB genes in rice, Oryza sativa L., encode transcription activators that and cold-responsive gene expression. DOI: 10.1046/j.1365-313x.2003.01661.x ; PMID: 12609047
- ICE1: a regulator of cold-induced transcriptome and freezing tolerance in Arabidopsis. DOI: 10.1101/gad.1077503 ; PMID: 12672693
- The sfr6 mutant of Arabidopsis is defective in transcriptional activation via CBF/DREB1 and DREB2 and shows sensitivity to osmotic stress. DOI: 10.1046/j.1365-313x.2003.01734.x ; PMID: 12753580
- Arabidopsis transcriptional activators CBF1, CBF2, and CBF3 have matching functional activities. DOI: 10.1023/B:PLAN.0000040902.06881.d4 ; PMID: 15356394
- Freezing-sensitive tomato has a functional CBF cold response pathway, but a CBF regulon that differs from that of freezing-tolerant Arabidopsis. DOI: 10.1111/j.1365-313X.2004.02176.x ; PMID: 15341633
- Roles of the CBF2 and ZAT12 transcription factors in configuring the low temperature transcriptome of Arabidopsis. DOI: 10.1111/j.1365-313X.2004.02288.x ; PMID: 15634197
- Low temperature induction of Arabidopsis CBF1, 2, and 3 is gated by the circadian clock. DOI: 10.1104/pp.104.058354 ; PMID: 15728337
- Multiple hydrophobic motifs in Arabidopsis CBF1 COOH-terminus provide functional redundancy in trans-activation. DOI: 10.1007/s11103-005-6760-4 ; PMID: 16021338
- The cold-induced early activation of phospholipase C and D pathways determines the response of two distinct clusters of genes in Arabidopsis cell suspensions. DOI: 10.1104/pp.105.068171 ; PMID: 16258011
- Involvement of GIGANTEA gene in the regulation of the cold stress response in Arabidopsis. DOI: 10.1007/s00299-005-0061-x ; PMID: 16231185
- Physical and functional interactions of Arabidopsis ADA2 transcriptional coactivator proteins with the acetyltransferase GCN5 and with the cold-induced transcription factor CBF1. DOI: 10.1016/j.bbaexp.2006.02.006 ; PMID: 16603259
- Suppression of phospholipase Dalpha1 induces freezing tolerance in Arabidopsis: response of cold-responsive genes and osmolyte accumulation. DOI: 10.1016/j.jplph.2005.08.006 ; PMID: 16949955
- Thellungiella: an Arabidopsis-related model plant adapted to cold temperatures. DOI: 10.1111/j.1365-3040.2007.01653.x ; PMID: 17407531
- Light-quality regulation of freezing tolerance in Arabidopsis thaliana. DOI: 10.1038/ng.2007.3 ; PMID: 17965713
- Arabidopsis CBF1 and CBF3 have a different function than CBF2 in cold acclimation and define different gene classes in the CBF regulon. DOI: 10.1073/pnas.0705639105 ; PMID: 18093929
- Combinatorial interactions of multiple cis-elements regulating the induction of the Arabidopsis XERO2 dehydrin gene by abscisic acid and cold. DOI: 10.1111/j.1365-313X.2007.03399.x ; PMID: 18088305
- Identification of ICE2, a gene involved in cold acclimation which determines freezing tolerance in Arabidopsis thaliana. DOI: 10.1016/j.gene.2008.10.016 ; PMID: 19026725
- A moderate decrease in temperature induces COR15a expression through the CBF signaling cascade and enhances freezing tolerance. DOI: 10.1111/j.1365-313X.2009.03959.x ; PMID: 19563440
- The phytochrome-interacting factor PIF7 negatively regulates DREB1 expression under circadian control in Arabidopsis. DOI: 10.1104/pp.109.147033 ; PMID: 19837816
- The development of protein microarrays and their applications in DNA-protein and protein-protein interaction analyses of Arabidopsis transcription factors. DOI: 10.1093/mp/ssm009 ; PMID: 19802365
- A calcium/calmodulin-regulated member of the receptor-like kinase family confers cold tolerance in plants. DOI: 10.1074/jbc.M109.035659 ; PMID: 20026608
- Nitric oxide participates in cold-responsive phosphosphingolipid formation and gene expression in Arabidopsis thaliana. DOI: 10.1111/j.1469-8137.2010.03500.x ; PMID: 21039566
- Circadian clock-associated 1 and late elongated hypocotyl regulate expression of the C-repeat binding factor (CBF) pathway in Arabidopsis. DOI: 10.1073/pnas.1103741108 ; PMID: 21471455
- Photoperiodic regulation of the C-repeat binding factor (CBF) cold acclimation pathway and freezing tolerance in Arabidopsis thaliana. DOI: 10.1073/pnas.1211295109 ; PMID: 22927419
- H2O2-triggered retrograde signaling from chloroplasts to nucleus plays specific role in response to stress. DOI: 10.1074/jbc.M111.292847 ; PMID: 22334687
- The Cysteine2/Histidine2-Type Transcription Factor ZINC FINGER OF ARABIDOPSIS THALIANA6 Modulates Biotic and Abiotic Stress Responses by Activating Salicylic Acid-Related Genes and C-REPEAT-BINDING FACTOR Genes in Arabidopsis. DOI: 10.1104/pp.114.242404 ; PMID: 24834923
- Cloning of Gossypium hirsutum sucrose non-fermenting 1-related protein kinase 2 gene (GhSnRK2) and its overexpression in transgenic Arabidopsis escalates drought and low temperature tolerance. DOI: 10.1371/journal.pone.0112269 ; PMID: 25393623
- Overexpression of wheat NF-YA10 gene regulates the salinity stress response in Arabidopsis thaliana. DOI: 10.1016/j.plaphy.2014.11.011 ; PMID: 25461698
- Arabidopsis thaliana ICE2 gene: phylogeny, structural evolution and functional diversification from ICE1. DOI: 10.1016/j.plantsci.2014.08.011 ; PMID: 25443829
- Overexpression of LOV KELCH protein 2 confers dehydration tolerance and is associated with enhanced expression of dehydration-inducible genes in Arabidopsis thaliana. DOI: 10.1007/s00299-015-1746-4 ; PMID: 25627253
- Isolation of a WRKY30 gene from Muscadinia rotundifolia (Michx) and validation of its function under biotic and abiotic stresses. DOI: 10.1007/s00709-015-0769-6 ; PMID: 25643917
- Melatonin induces the transcripts of CBF/DREB1s and their involvement in both abiotic and biotic stresses in Arabidopsis. DOI: 10.1111/jpi.12262 ; PMID: 26182834
- The unified ICE-CBF pathway provides a transcriptional feedback control of freezing tolerance during cold acclimation in Arabidopsis. DOI: 10.1007/s11103-015-0365-3 ; PMID: 26311645
- Delayed germination of Arabidopsis seeds under chilling stress by overexpressing an abiotic stress inducible GhTPS11. DOI: 10.1016/j.gene.2015.08.056 ; PMID: 26325072
- Burkholderia phytofirmans PsJN reduces impact of freezing temperatures on photosynthesis in Arabidopsis thaliana. DOI: 10.3389/fpls.2015.00810 ; PMID: 26483823
- A cotton miRNA is involved in regulation of plant response to salt stress. DOI: 10.1038/srep19736 ; PMID: 26813144
- Melatonin-induced CBF/DREB1s are essential for diurnal change of disease resistance and CCA1 expression in Arabidopsis. DOI: 10.1016/j.plaphy.2016.01.018 ; PMID: 26828406
- BZR1 Positively Regulates Freezing Tolerance via CBF-Dependent and CBF-Independent Pathways in Arabidopsis. DOI: 10.1016/j.molp.2017.01.004 ; PMID: 28089951
- Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. DOI: 10.1105/tpc.16.00669 ; PMID: 28351986
- Plant Temperature Acclimation and Growth Rely on Cytosolic Ribosome Biogenesis Factor Homologs. DOI: 10.1104/pp.17.01448 ; PMID: 29382692
- Integration of Environmental and Developmental (or Metabolic) Control of Seed Mass by Sugar and Ethylene Metabolisms in Arabidopsis. DOI: 10.1021/acs.jafc.7b05992 ; PMID: 29528636
- Arabidopsis PCaP2 Plays an Important Role in Chilling Tolerance and ABA Response and SnRK2-Mediated Transcriptional Regulatory Network. DOI: 10.3389/fpls.2018.00215 ; PMID: 29568301
- Transcriptional read-through of the long non-coding RNA SVALKA governs plant cold acclimation. DOI: 10.1038/s41467-018-07010-6 ; PMID: 30385760
- BYPASS1-LIKE, A DUF793 Family Protein, Participates in Freezing Tolerance via the CBF Pathway in Arabidopsis. DOI: 10.3389/fpls.2019.00807 ; PMID: 31297122
- The SWI/SNF ATP-Dependent Chromatin Remodeling Complex in Arabidopsis Responds to Environmental Changes in Temperature-Dependent Manner. DOI: 10.3390/ijms21030762 ; PMID: 31979421
- The cold response regulator CBF1 promotes Arabidopsis hypocotyl growth at ambient temperatures. DOI: 10.15252/embj.2019103630 ; PMID: 32449547
- Gibberellin signaling mediates lateral root inhibition in response to K+-deprivation. DOI: 10.1093/plphys/kiaa093 ; PMID: 33793923
- Light Quality Modulates Plant Cold Response and Freezing Tolerance. DOI: 10.3389/fpls.2022.887103 ; PMID: 35755673
- Sulfenylation of ENOLASE2 facilitates H(2)O(2)-conferred freezing tolerance in Arabidopsis. DOI: 10.1016/j.devcel.2022.06.012 ; PMID: 35809562
- An amiRNA screen uncovers redundant CBF and ERF34/35 transcription factors that differentially regulate arsenite and cadmium responses. DOI: 10.1111/pce.14023 ; PMID: 33554343
- An R2R3-MYB FtMYB11 from Tartary buckwheat has contrasting effects on abiotic tolerance in Arabidopsis. DOI: 10.1016/j.jplph.2022.153842 ; PMID: 36434991
- The salt-activated CBF1/CBF2/CBF3-GALS1 module fine-tunes galactan-induced salt hypersensitivity in Arabidopsis. DOI: 10.1111/jipb.13501 ; PMID: 37149782
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- Genome-wide analysis of the ERF gene family in Arabidopsis and rice. DOI: 10.1104/pp.105.073783 ; PMID: 16407444
Gene Resources
- UniProt: B6DTR3
- EMBL: FJ169272
- AlphaFoldDB: B6DTR3
- EnsemblPlants: AT4G25490.1
- Gramene: AT4G25490.1
- KEGG: ath:AT4G25490
- Orthologous matrix: DYCPTLA
- ExpressionAtlas: AT4G25490
- InterPro: IPR001471, IPR016177, IPR036955
- PANTHER: PTHR31839, PTHR31839:SF23
- SUPFAM: SSF54171
- PROSITE: PS51032
- Gene3D: 3.30.730.10
- SWISS-MODEL: B6DTR3
- Conserved Domain Database: cd00018
Sequences
cDNA Sequence
- >AT4G25490.1
ACAACAGCAGCCAGCCAACCACACAGGCACACACTCGATAGAATTTAAAGAACTCATAAAGGTTAACGAGTGAAGAGTCAAAAGTCTCTTTACAAGGGTCAAAGGACACACGTCAGACAGCGAGTGGAACATCGTGGGATTGCTTCGCTATGTACTATACACGTGTCATTCACAGAGACAAAAACTCCGTGTGCTCCCCACATATCCGTTATCTCTCCTCCGGCCAATATAAACACCAATTCTCACTCTCACTTTTTATACTAACTACACACTTGAAAAAGAATCTACCTGAAAAGAAAAAAAAGAGAGAGAGATATAAATAGCTTTACCAAGACAGATATACTATCTTTTATTAATCCAAAAAGACTGAGAACTCTAGTAACTACGTACTACTTAAACCTTATCCAGTTTCTTGAAACAGAGTACTCTGATCAATGAACTCATTTTCAGCTTTTTCTGAAATGTTTGGCTCCGATTACGAGCCTCAAGGCGGAGATTATTGTCCGACGTTGGCCACGAGTTGTCCGAAGAAACCGGCGGGCCGTAAGAAGTTTCGTGAGACTCGTCACCCAATTTACAGAGGAGTTCGTCAAAGAAACTCCGGTAAGTGGGTTTCTGAAGTGAGAGAGCCAAACAAGAAAACCAGGATTTGGCTCGGGACTTTCCAAACCGCTGAGATGGCAGCTCGTGCTCACGACGTCGCTGCATTAGCCCTCCGTGGCCGATCAGCATGTCTCAACTTCGCTGACTCGGCTTGGCGGCTACGAATCCCGGAGTCAACATGCGCCAAGGATATCCAAAAAGCGGCTGCTGAAGCGGCGTTGGCTTTTCAAGATGAGACGTGTGATACGACGACCACGAATCATGGCCTGGACATGGAGGAGACGATGGTGGAAGCTATTTATACACCGGAACAGAGCGAAGGTGCGTTTTATATGGATGAGGAGACAATGTTTGGGATGCCGACTTTGTTGGATAATATGGCTGAAGGCATGCTTTTACCGCCGCCGTCTGTTCAATGGAATCATAATTATGACGGCGAAGGAGATGGTGACGTGTCGCTTTGGAGTTACTAATATTCGATAGTCGTTTCCATTTTTGTACTATAGTTTGAAAATATTCTAGTTCCTTTTTTTAGAATGGTTCCTTCATTTTATTTTATTTTATTGTTGTAGAAACGAGTGGAAAATAATTCAATACAAAACAAATCGTTTTCT
CDS Sequence
Protein Sequence