Information report for AT4G24770
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0000293 — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)
- SALK_109613 — defective in RNA editing; defective in postillumination reduction of the plastoquinone pool;
Functional Keywords
Literature and News
- Central functions of the lumenal and peripheral thylakoid proteome of Arabidopsis determined by experimentation and genome-wide prediction. DOI: 10.1105/tpc.010304 ; PMID: 11826309
- a high-density colony array study (HDCA). DOI: 10.1046/j.1365-313x.2003.01847.x ; PMID: 12969430
- Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. DOI: 10.1074/jbc.M308435200 ; PMID: 14576160
- In-depth analysis of the thylakoid membrane proteome of Arabidopsis thaliana chloroplasts: new proteins, new functions, and a plastid proteome database. DOI: 10.1105/tpc.017814 ; PMID: 14729914
- New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy. DOI: 10.1074/jbc.M406763200 ; PMID: 15322131
- MicroRNA-targeted and small interfering RNA-mediated mRNA degradation is regulated by argonaute, dicer, and RNA-dependent RNA polymerase in Arabidopsis. DOI: 10.1105/tpc.106.042127 ; PMID: 16798886
- Identification of proteins expressed at extremely low level in Arabidopsis leaves. DOI: 10.1016/j.bbrc.2007.04.189 ; PMID: 17511964
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis. DOI: 10.1104/pp.108.124545 ; PMID: 18633119
- A type III effector ADP-ribosylates RNA-binding proteins and quells plant immunity. DOI: 10.1038/nature05737 ; PMID: 17450127
- Chloroplast RNA-Binding Protein RBD1 Promotes Chilling Tolerance through 23S rRNA Processing in Arabidopsis. DOI: 10.1371/journal.pgen.1006027 ; PMID: 27138552
- Embryonic Photosynthesis Affects Post-Germination Plant Growth. DOI: 10.1104/pp.20.00043 ; PMID: 32060052
- Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. DOI: 10.3390/biom10040661 ; PMID: 32344669
- The RNA-recognition motif in chloroplasts. DOI: 10.1016/j.jplph.2011.01.012 ; PMID: 21330002
- Central functions of the lumenal and peripheral thylakoid proteome of Arabidopsis determined by experimentation and genome-wide prediction. DOI: 10.1105/tpc.010304 ; PMID: 11826309
- Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis. DOI: 10.1021/pr034025j ; PMID: 12938931
- In-depth analysis of the thylakoid membrane proteome of Arabidopsis thaliana chloroplasts: new proteins, new functions, and a plastid proteome database. DOI: 10.1105/tpc.017814 ; PMID: 14729914
- The Arabidopsis thaliana chloroplast proteome reveals pathway abundance and novel protein functions. DOI: 10.1016/j.cub.2004.02.039 ; PMID: 15028209
- New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy. DOI: 10.1074/jbc.M406763200 ; PMID: 15322131
- Identification of proteins expressed at extremely low level in Arabidopsis leaves. DOI: 10.1016/j.bbrc.2007.04.189 ; PMID: 17511964
- Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. DOI: 10.1371/journal.pone.0001994 ; PMID: 18431481
- Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis. DOI: 10.1104/pp.108.124545 ; PMID: 18633119
- A type III effector ADP-ribosylates RNA-binding proteins and quells plant immunity. DOI: 10.1038/nature05737 ; PMID: 17450127
- The oligomeric stromal proteome of Arabidopsis thaliana chloroplasts. DOI: 10.1074/mcp.M500180-MCP200 ; PMID: 16207701
- Analysis of protein complexes in Arabidopsis leaves using size exclusion chromatography and label-free protein correlation profiling. DOI: 10.1016/j.jprot.2017.06.004 ; PMID: 28627464
Gene Resources
- UniProt: A0A178V4M1
- EMBL: CACRSJ010000109, LUHQ01000004
- AlphaFoldDB: A0A178V4M1
- EnsemblPlants: AT4G24770.1, AT4G24770.2
- Gramene: AT4G24770.1, AT4G24770.2
- KEGG: ath:AT4G24770
- Orthologous matrix: KWENDDS
- ExpressionAtlas: AT4G24770
- InterPro: IPR000504, IPR012677, IPR035979
- PANTHER: PTHR48025, PTHR48025:SF3
- SUPFAM: SSF54928
- PROSITE: PS50102
- Gene3D: 3.30.70.330
- SWISS-MODEL: A0A178V4M1
- Conserved Domain Database: cd21608, cd21609
Sequences
cDNA Sequence
- >AT4G24770.2
GCGGTCACGTGTACTGAGGGACATGGTTATTTTTTGTCTTTGGTTCTTGTAATGAGATTTTAACTATGGTAAATCTAAGAGCCCATTTGAAGATGATGTCTCGGCCCTCCTTATCCTTATCTCGCCCACCGTTCTAAAACCCTTCCCTTCCTCTTCTTTTCTCTTCTCCTTCCACTTCCACTTCTTCTATCTCTCACAATTCAGCAATGGCTTCTTCTATAGTTACCTCTAGCTTGAAGCCTTTAGCCATGGCCGATTCTTCCTCTTCTACCATTTTCTCCCATCCTTCCATCTCCTCTACCATCTCTTCCTCCAGAATTCGCAGCTCCAGTGTTTCCCTCCTTACCGGACGCATTAACCTGCCCCTCTCTTTCTCTCGCGTCTCTCTATCTCTTAAAACCAAAACCCACCTTAAAAAATCCCCCTTTGTCTCCTTCGTTGCCCAGACTTCGGATTGGGCTGAAGAAGGTGGAGAAGGAAGCGTCGCTGTTGAGGAGACCGAGAACAGTTTAGAGTCACAAGATGTGAGCGAAGGAGATGAGAGCGAAGGAGATGCGAGCGAAGGAGATGTGAGCGAAGGAGATGAGAGCGAAGGAGATGTGAGCGAAGGAGCTGTGAGCGAAAGAGCTGAGTTCCCGGAGCCATCGGAAGAAGCCAAGCTTTTCGTCGGAAATTTGGCTTATGATGTTAATAGCCAAGCTTTGGCTATGCTCTTTGAGCAAGCCGGTACTGTTGAAATCGCCGAGGTTATATACAATAGGGAAACTGACCAGAGTCGTGGGTTTGGATTTGTGACAATGAGTTCTGTGGACGAAGCTGAGACAGCTGTGGAGAAGTTCAACCGTTATGATCTTAACGGACGTCTACTAACTGTAAACAAGGCAGCTCCAAGAGGATCACGTCCAGAACGTGCGCCTCGGGTATATGAACCTGCATTCAGAGTATATGTAGGGAATCTACCATGGGATGTGGACAATGGCCGTCTAGAACAGCTTTTCAGTGAGCATGGTAAAGTTGTGGAAGCTAGGGTGGTTTACGACCGTGAGACAGGTCGTTCACGTGGATTCGGGTTTGTCACAATGTCTGACGTGGATGAACTCAACGAAGCCATCTCTGCCCTCGATGGACAGAACTTGGAGGGTAGAGCAATCAGAGTGAATGTAGCGGAAGAGCGTCCTCCAAGGCGTGGATATTAAAGCTGAGATCTAGCTGTGCCCTCTCTCTCTCCCTATCTTGCATTTTGTTTAGACGAGATTCTTACACTCTTCAACGATTGTTTTTGGCTGAACTCTGAATGTGAAAGTTAAGCTGCTTCTAAAGTAATTTGTATCGCTTGTTTTTGATGATCTCTTATTCATAGTTTAATTCCTAATTGTTGGAGTTTCATTCCCTCAATCGCATCGGGGGATACGACACATTTCTGGG - >AT4G24770.1
GCGGTCACGTGTACTGAGGGACATGGTTATTTTTTGTCTTTGGTTCTTGTAATGAGATTTTAACTATGGTAAATCTAAGAGCCCATTTGAAGATGATGTCTCGGCCCTCCTTATCCTTATCTCGCCCACCGTTCTAAAACCCTTCCCTTCCTCTTCTTTTCTCTTCTCCTTCCACTTCCACTTCTTCTATCTCTCACAATTCAGCAATGGCTTCTTCTATAGTTACCTCTAGCTTGAAGCCTTTAGCCATGGCCGATTCTTCCTCTTCTACCATTTTCTCCCATCCTTCCATCTCCTCTACCATCTCTTCCTCCAGAATTCGCAGCTCCAGTGTTTCCCTCCTTACCGGACGCATTAACCTGCCCCTCTCTTTCTCTCGCGTCTCTCTATCTCTTAAAACCAAAACCCACCTTAAAAAATCCCCCTTTGTCTCCTTCGTTGCCCAGACTTCGGATTGGGCTGAAGAAGGTGGAGAAGGAAGCGTCGCTGTTGAGGAGACCGAGAACAGTTTAGAGTCACAAGATGTGAGCGAAGGAGATGAGAGCGAAGGAGATGCGAGCGAAGGAGATGTGAGCGAAGGAGATGAGAGCGAAGGAGATGTGAGCGAAGGAGCTGTGAGCGAAAGAGCTGAGTTCCCGGAGCCATCGGAAGAAGCCAAGCTTTTCGTCGGAAATTTGGCTTATGATGTTAATAGCCAAGCTTTGGCTATGCTCTTTGAGCAAGCCGGTACTGTTGAAATCGCCGAGGTTATATACAATAGGGAAACTGACCAGAGTCGTGGGTTTGGATTTGTGACAATGAGTTCTGTGGACGAAGCTGAGACAGCTGTGGAGAAGTTCAACCGTTATGATCTTAACGGACGTCTACTAACTGTAAACAAGGCAGCTCCAAGAGGATCACGTCCAGAACGTGCGCCTCGGGTATATGAACCTGCATTCAGAGTATATGTAGGGAATCTACCATGGGATGTGGACAATGGCCGTCTAGAACAGCTTTTCAGTGAGCATGGTAAAGTTGTGGAAGCTAGGGTGGTTTACGACCGTGAGACAGGTCGTTCACGTGGATTCGGGTTTGTCACAATGTCTGACGTGGATGAACTCAACGAAGCCATCTCTGCCCTCGATGGACAGAACTTGGAGGGTAGAGCAATCAGAGTGAATGTAGCGGAAGAGCGTCCTCCAAGGCGTGGATATTAAAGCTGAGATCTAGCTGTGCCCTCTCTCTCTCCCTATCTTGCATTTTGTTTAGACGAGATTCTTACACTCTTCAACGATTGTTTTTGGCTGAACTCTGAATGTGAAAGTTAAGCTGCTTCTAAAGTAATTTGTATCGCTTGTTTTTGATGATCTCTTATTCATAGTTTAATTCCTAATTGTTGGAGTTTCATTCCCTCAATCGCATCGGGGGATACGACACATTTCTGGG
CDS Sequence
Protein Sequence