Gene Details:

• Gene ID: AT4G24560
• Gene Symbol: UBP16
• Gene Name: ubiquitin-specific protease 16
• Description: ubiquitin-specific protease 16;(source:Araport11)
• TAIR Accession:
• Genome: Araport11_genome_release
• Species: Arabidopsis thaliana

Transcripts:

• AT4G24560.1

Plant Ontology Annotations:

• PO:0000037  — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
• PO:0008019  — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
• PO:0009006  — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
• PO:0009009  — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
• PO:0009025  — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
• PO:0009029  — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
• PO:0009031  — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
• PO:0009046  — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
• PO:0009052  — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
• PO:0020030  — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
• PO:0020038  — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
• PO:0020100  — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
• PO:0020137  — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
• PO:0025022  — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
• PO:0025281  — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)

Germplasm Phenotype:

• CS860103  — No visible phenotype.
• CS860120  — The phenotype of ubp15-2 ubp16-1 is similar to that of the ubp15-2 mutant (CS860102), but more severe, with more extreme narrow rosette leaves, smaller flowers, aborted siliques, dwarf plants.
• CS860121  — The phenotype of the double mutant ubp15-1 ubp17-1 is similar to that of the ubp15-1 mutant (CS860101). Short roots at seedling stage; flat rosettes with narrow and serrated leaves; leaf phenotype becomes more severe in later rosette leaves; reduced weight of rosette leaf per area; strong reduction in width than in length of the rosette leaf blade; decreased epidermal and palisade cell number across the leaf blade; few rosette leaves before bolting; early flowering; weak apical dominance; reduced fertility; small flowers; short siliques; short and slim stems; small plants.
• CS860122  — The phenotype of ubp15-2 ubp17-2 is similar to that of the ubp15-2 mutant (CS860102). Short roots at seedling stage; flat rosettes with narrow and serrated leaves; leaf phenotype becomes more severe in later rosette leaves; reduced weight of rosette leaf per area; strong reduction in width than in length of the rosette leaf blade; decreased epidermal and palisade cell number across the leaf blade; few rosette leaves before bolting; early flowering; weak apical dominance; reduced fertility; small flowers; short siliques; short and slim stems; small plants.
• CS860124  — Phenotype similar to that of the double mutant ubp15-1 ubp16-1; similar but more severe than the phenotype of the ubp15-1 mutant (CS860101), with more extreme narrow rosette leaves, smaller flowers, aborted siliques, dwarf plants.

Function-related keywords:

• shoot axis apex ,  leaf lamina base ,  shoot system ,  plant embryo ,  vascular leaf ,  stamen ,  sepal ,  flower ,  inflorescence flower pedicel ,  cotyledon ,  petiole ,  hypocotyl ,  leaf apex ,  collective leaf structure ,  pollen

Literature:

• The ubiquitin-specific protease family from Arabidopsis. AtUBP1 and 2 are required for the resistance to the amino acid analog canavanine.   DOI:  10.1104/pp.124.4.1828 ;  PMID:  11115897
• Functional characterization of the Arabidopsis ubiquitin-specific protease gene family reveals specific role and redundancy of individual members in development.   DOI:  10.1111/j.1365-313X.2008.03557.x ;  PMID:  18485060
• Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.   DOI:  10.1104/pp.108.121038 ;  PMID:  18650403
• Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis.   DOI:  10.1104/pp.108.126375 ;  PMID:  18775970
• UBIQUITIN-SPECIFIC PROTEASES function in plant development and stress responses.   DOI:  10.1007/s11103-017-0633-5 ;  PMID:  28695315
• Functional characterization of the Arabidopsis ubiquitin-specific protease gene family reveals specific role and redundancy of individual members in development.   DOI:  10.1111/j.1365-313X.2008.03557.x ;  PMID:  18485060

Sequences: