Information report for AT4G24220
Gene Details
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Functional Descriptions
- PO:0000036 — leaf vascular system — sistema vascular de la hoja (Spanish, exact), 葉維管系 (Japanese, exact), leaf venation (related)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009047 — stem — caña (Spanish, exact), culm (exact), eje primario (Spanish, exact), primary axis (exact), primary stem (exact), tallo (Spanish, exact), tronco (Spanish, exact), 茎 (Japanese, exact), bole (narrow), cane (narrow), caudex (narrow), caudices (narrow), core (narrow), primocane (narrow), scape (narrow), stalk (narrow), trunk (narrow)
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0000293 — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)
- GO:0005829 — located in — cytosol
- GO:0008202 — acts upstream of or within — steroid metabolic process
- GO:0009611 — acts upstream of or within — response to wounding
- GO:0035671 — enables — enone reductase activity
- GO:0046983 — enables — protein dimerization activity
- GO:0047787 — enables — delta4-3-oxosteroid 5beta-reductase activity
- GO:0010051 — acts upstream of or within — xylem and phloem pattern formation
Functional Keywords
- leaf vascular system , root , stem , shoot axis apex , leaf lamina base , shoot system , plant embryo , vascular leaf , stamen , sepal , flower , inflorescence flower pedicel , cotyledon , petiole , hypocotyl , leaf apex , collective leaf structure , pollen , guard cell
Literature and News
- Classification of genes differentially expressed during water-deficit stress in Arabidopsis thaliana: an analysis using microarray and differential expression data. DOI: 10.1093/aob/mcf104 ; PMID: 12102506
- The Arabidopsis SLEEPY1 gene encodes a putative F-box subunit of an SCF E3 ubiquitin ligase. DOI: 10.1105/tpc.010827 ; PMID: 12724538
- Large-scale identification of leaf senescence-associated genes. DOI: 10.1046/j.1365-313x.2003.01908.x ; PMID: 14617064
- Gene expression profiles of Arabidopsis Cvi seeds during dormancy cycling indicate a common underlying dormancy control mechanism. DOI: 10.1111/j.1365-313X.2006.02738.x ; PMID: 16709196
- Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding. DOI: 10.1186/1471-2164-9-57 ; PMID: 18230180
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- Analysis of protein complexes in Arabidopsis leaves using size exclusion chromatography and label-free protein correlation profiling. DOI: 10.1016/j.jprot.2017.06.004 ; PMID: 28627464
Gene Resources
- UniProt: A0A178V158
- EMBL: CACRSJ010000109, CACSHJ010000095, LUHQ01000004
- AlphaFoldDB: A0A178V158
- EnsemblPlants: AT4G24220.1
- Gramene: AT4G24220.1
- KEGG: ath:AT4G24220
- Orthologous matrix: GRPFVFP
- ExpressionAtlas: AT4G24220
- InterPro: IPR036291, IPR055222
- PANTHER: PTHR32487, PTHR32487:SF0
- SUPFAM: SSF51735
- Gene3D: 3.40.50.720
- OrthoDB: A0A178V158
- SWISS-MODEL: A0A178V158
- Conserved Domain Database: cd08948
Sequences
cDNA Sequence
- >AT4G24220.1
ATAAACAAACTCGAGTGATTACAAAGAACTTATAAACCACTTATGTGGCATACTAAAATTTAACAAAAAAAAATGTTTTGCGAAAAATAAGAAGATTTTGTTCATCTTTTTTGGTAAGATGCCAGTTTAGCTAAAGATATTTTTCATATATAAAAATGACAATAAACACATTACAAAAGACAAACCCCACACGGCTCTCTCTAGCCAAATTACTTGGCCACGACCATAAACACAAAACACCGCTTAGCTTCTAAAATCTGAACATCGAGAAAAAATGAGTTGGTGGTGGGCTGGCGCCATCGGAGCTGCCAAGAAGAAACTCGACGAAGATGAACCATCACAAAGCTTCGAGAGCGTCGCTCTCATCATCGGCGTTACTGGAATCGTCGGAAACAGCTTGGCGGAGATTCTCCCTCTTTCCGACACACCCGGTGGTCCATGGAAAGTCTACGGCGTCGCTCGTCGTCCTCGTCCTACCTGGAACGCCGATCATCCGATCGATTACATCCAGTGCGATGTCTCCGACGCCGAAGACACAAGATCCAAGCTTTCCCCTTTAACCGATGTCACACATGTCTTCTACGTCACCTGGACCAATCGTGAATCGGAAAGTGAAAACTGTGAAGCAAATGGCTCAATGCTCCGTAACGTTCTCCAAGCGATTATCCCATACGCGCCAAATCTCCGACATGTTTGTCTCCAGACAGGGACAAAGCACTACCTTGGCCCTTTCACCAACGTTGACGGACCTCGTCACGATCCACCGTTCACTGAGGATATGCCGAGATTGCAGATCCAGAATTTCTATTATACCCAAGAGGATATTCTGTTTGAAGAGATCAAGAAGATAGAAACCGTGACGTGGTCTATCCACAGACCAAACATGATCTTTGGGTTCTCTCCTTATAGTTTGATGAACATTGTTGGGACTCTCTGTGTCTATGCAGCGATATGTAAGCATGAAGGGTCTCCGTTGTTGTTTCCTGGGAGCAAGAAAGCTTGGGAAGGGTTCATGACGGCTTCTGACGCGGATTTGATTGCGGAGCAGCAGATTTGGGCGGCGGTTGATCCGTATGCGAAGAACGAGGCGTTTAACTGCAACAATGCTGATATCTTCAAGTGGAAGCATCTGTGGAAGATTCTAGCTGAGCAGTTTGGGATTGAGGAGTATGGATTTGAGGAAGGGAAGAATTTGGGGTTGGTGGAGATGATGAAAGGGAAAGAGAGAGTGTGGGAGGAGATGGTTAAGGAGAATCAATTGCAAGAGAAGAAGCTTGAGGAAGTTGGTGTGTGGTGGTTTGCTGATGTTATACTTGGAGTTGAAGGAATGATTGATAGTATGAACAAGAGTAAGGAATATGGCTTCCTTGGTTTCAGGAACTCCAACAACTCTTTTATCTCTTGGATTGACAAGTACAAGGCGTTCAAGATCGTACCTTGATTCCAAAACATACTTGGATGTTTGTTTACTCTGGTTTCATGTTTATGTTTCTCCCAAAATCTCAGTTCTTTGTTGTCTAAATGAAATAAAAGCGGTACCATCTTTTTCTGTTCTTTTTTTTAATTCCATCTTTAGTCTTGTAAACTCTACTCTTTTGGGAATAGTTTTCAATTTTTAAATATCGTTACAAGTTGTAATGGAAAGATATTGGACAATGGTGCAGTGTCATAAGGACAAAGAGCTTTACAGGCTAATGGAAATACCAGATTCTGTGTTTTGCA - >AT4G24220.2
ATAAACAAACTCGAGTGATTACAAAGAACTTATAAACCACTTATGTGGCATACTAAAATTTAACAAAAAAAAATGTTTTGCGAAAAATAAGAAGATTTTGTTCATCTTTTTTGGTAAGATGCCAGTTTAGCTAAAGATATTTTTCATATATAAAAATGACAATAAACACATTACAAAAGACAAACCCCACACGGCTCTCTCTAGCCAAATTACTTGGCCACGACCATAAACACAAAACACCGCTTAGCTTCTAAAATCTGAACATCGAGAAAAAATGAGTTGGTGGTGGGCTGGCGCCATCGGAGCTGCCAAGAAGAAACTCGACGAAGATGAACCATCACAAAGCTTCGAGAGCGTCGCTCTCATCATCGGCGTTACTGGAATCGTCGGAAACAGCTTGGCGGAGATTCTCCCTCTTTCCGACACACCCGGTGGTCCATGGAAAGTCTACGGCGTCGCTCGTCGTCCTCGTCCTACCTGGAACGCCGATCATCCGATCGATTACATCCAGTGCGATGTCTCCGACGCCGAAGACACAAGATCCAAGCTTTCCCCTTTAACCGATGTCACACATGTCTTCTACGTCACCTGGACCAATCGTGAATCGGAAAGTGAAAACTGTGAAGCAAATGGCTCAATGCTCCGTAACGTTCTCCAAGCGATTATCCCATACGCGCCAAATCTCCGACATGTTTGTCTCCAGACAGGGACAAAGCACTACCTTGGCCCTTTCACCAACGTTGACGGACCTCGTCACGATCCACCGTTCACTGAGGATATGCCGAGATTGCAGATCCAGAATTTCTATTATACCCAAGAGGATATTCTGTTTGAAGAGATCAAGAAGATAGAAACCGTGACGTGGTCTATCCACAGACCAAACATGATCTTTGGGTTCTCTCCTTATAGTTTGATGAACATTGTTGGGACTCTCTGTGTCTATGCAGCGATATGTAAGCATGAAGGGTCTCCGTTGTTGTTTCCTGGGAGCAAGAAAGCTTGGGAAGGGTTCATGACGGCTTCTGACGCGGATTTGATTGCGGAGCAGCAGATTTGGGCGGCGGTTGATCCGTATGCGAAGAACGAGGCGTTTAACTGCAACAATGCTGATATCTTCAAGTGGAAGCATCTGTGGAAGATTCTAGCTGAGCAGTTTGGGATTGAGGAGTATGGATTTGAGGAAGGGAAGAATTTGGGGTTGGTGGAGATGATGAAAGGGAAAGAGAGAGTGTGGGAGGAGATGGTTAAGGAGAATCAATTGCAAGAGAAGAAGCTTGAGGAAGTTGGTGTGTGGTGGTTTGCTGATGTTATACTTGGAGTTGAAGGAATGATTGATAGTATGAACAAGAGTAAGGAATATGGCTTCCTTGGTTTCAGGAACTCCAACAACTCTTTTATCTCTTGGATTGACAAGTACAAGGCGTTCAAGATCGTACCTTGATTCCAAAACATACTTGGATGTTTGTTTACTCTGGTTTCATGTTTATGTTTCTCCCAAAATCTCAGTTCTTTGTTGTCTAAATGAAATAAAAGCGGTACCATCTTTTTCTGTTCTTTTTTTTAATTCCATCTTTAGTCTTGTAAACTCTACTCTTTTGGGAATAGTTTTCAATTTTTAAATATCGTTACAAGTTGTAATGGAAAGATATTGGACAATGGTGCAGTGTCATAAGGACAAAGAGCTTTACAGGCTAATGGAAATACCAGATTCTGTGTTTTGCA
CDS Sequence
Protein Sequence