Gene Details:
- Gene ID: AT4G23630
- Gene Symbol: BTI1, RTN1, RTNLB1
- Gene Name: VIRB2-interacting protein 1, reticulon 1, Reticulan like protein B1
- Description: VIRB2-interacting protein 1;(source:Araport11)
- TAIR Accession: locus:2128494
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Plant Ontology Annotations:
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0000293 — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)
Gene Ontology:
- GO:0005783 — located in — endoplasmic reticulum
- GO:0000325 — located in — plant-type vacuole
- GO:0005789 — located in — endoplasmic reticulum membrane
- GO:0098554 — located in — cytoplasmic side of endoplasmic reticulum membrane
- GO:0071786 — involved in — endoplasmic reticulum tubular network organization
- GO:0071782 — located in — endoplasmic reticulum tubular network
- GO:0009617 — acts upstream of or within — response to bacterium
- GO:0005886 — located in — plasma membrane
- GO:0005515 — enables — protein binding
Function-related keywords:
- shoot axis apex , leaf lamina base , shoot system , plant embryo , vascular leaf , stamen , sepal , flower , inflorescence flower pedicel , cotyledon , petiole , hypocotyl , leaf apex , collective leaf structure , pollen , guard cell
Literature:
- Transcriptome changes for Arabidopsis in response to salt, osmotic, and cold stress. DOI: 10.1104/pp.008532 ; PMID: 12481097
- The Arabidopsis root transcriptome by serial analysis of gene expression. Gene identification using the genome sequence. DOI: 10.1104/pp.103.030536 ; PMID: 14730065
- Microarray expression analyses of Arabidopsis guard cells and isolation of a recessive abscisic acid hypersensitive protein phosphatase 2C mutant. DOI: 10.1105/tpc.019000 ; PMID: 14973164
- Identification of new intrinsic proteins in Arabidopsis plasma membrane proteome. DOI: 10.1074/mcp.M400001-MCP200 ; PMID: 15060130
- Transcriptional profiling implicates novel interactions between abiotic stress and hormonal responses in Thellungiella, a close relative of Arabidopsis. DOI: 10.1104/pp.105.070508 ; PMID: 16500996
- Transgressive segregation reveals two Arabidopsis TIR-NB-LRR resistance genes effective against Leptosphaeria maculans, causal agent of blackleg disease. DOI: 10.1111/j.1365-313X.2006.02688.x ; PMID: 16623885
- Novel tonoplast transporters identified using a proteomic approach with vacuoles isolated from cauliflower buds. DOI: 10.1104/pp.107.096917 ; PMID: 17660356
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- Five Arabidopsis reticulon isoforms share endoplasmic reticulum location, topology, and membrane-shaping properties. DOI: 10.1105/tpc.110.074385 ; PMID: 20424177
- Endogenous Arabidopsis messenger RNAs transported to distant tissues. DOI: 10.1038/nplants.2015.25 ; PMID: 27247031
- Putting the Squeeze on Plasmodesmata: A Role for Reticulons in Primary Plasmodesmata Formation. DOI: 10.1104/pp.15.00668 ; PMID: 26084919
- The odd one out: Arabidopsis reticulon 20 does not bend ER membranes but has a role in lipid regulation. DOI: 10.1038/s41598-018-20840-0 ; PMID: 29396477
- Arabidopsis RETICULON-LIKE3 (RTNLB3) and RTNLB8 Participate in Agrobacterium-Mediated Plant Transformation. DOI: 10.3390/ijms19020638 ; PMID: 29495267
- Identification of new intrinsic proteins in Arabidopsis plasma membrane proteome. DOI: 10.1074/mcp.M400001-MCP200 ; PMID: 15060130
- The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. DOI: 10.1105/tpc.104.027078 ; PMID: 15539469
- Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis. DOI: 10.1074/mcp.M600429-MCP200 ; PMID: 17317660
Sequences:
cDNA Sequence
- >AT4G23630.2
AGTTATTCGAAACACAATACATCGGTTTGAGCATTTTTGTGTACTTCATTATTTATGGACCATAACTTGAGGTTTCAGTTTGTTTCCGAGCATCTTTTTGTAATGGGCCCATGAGAGAACTGATACTGGGCTTGATCAGATTGATGTCCATTATTTGTGCTTTATTGGGCTCCACTCTTTCTCACTCTCACATTTTTTACAAGACAGAAAGAACGTGACGCATGTACGAATGGCTGAATCTTCCTCCACGTGTCCTGCAATTAAAAAAATTAGATCGTACCGCATCATGCGTCAGCCGCGTGACACCTGATCATAACCTAGTTACTTAGCTCAGACATCGCCACGTATACGTCCCTCATGACGGGAAACGTTAACTCTGACGGCGTCACATGTCGACCATTCGTTTTGTGAAATGTATTTTGTGTTCCCATTTGGCTTTTTGCCTTTTTCCCCAAGGTTTGGCTCTAATTAAGTAAACGAACCTGTAGCTTCGGAAGTTCGTATCCGAACCAACCAACGGCTCAGATTAGTTTCATATTTTCAACGGCTGAGATTAGAGTTTCGATTTCTTTCTTCTATTTTAGGCTTCGAGATCTTTTCTTCTCAAAAGGTAAAAACTTTGGGAAGCAGCTAAAATACTGTGTTCTTTGTTTCTTCCATCGAAATCGAAAAAAGCTAAGATCTTTGCGTTTTGAAACGATGGCGGAAGAACATAAGCATGATGAATCTGTGATCGCTCCTGAGCCAGCTGTTGAGGTTGTGGAGAGAGAATCGTTGATGGATAAGATATCGGAGAAGATCCATCACGGTGGTGATTCTTCTTCGTCTTCTTCATCTTCTGATGATGAAGACGAGAAGAAGAAGACTAAGAAGCCCTCTTCTCCTTCGTCTTCTATGAAATCGAAAGTTTACCGCTTGTTCGGACGAGAGCAGCCTGTTCATAAGGTTCTCGGCGGTGGAAAGCCGGCTGATATATTCATGTGGAAGAACAAGAAGATGTCTGGTGGTGTACTTGGTGGTGCTACAGCTGCTTGGGTTGTGTTTGAATTGATGGAGTACCATCTTCTCACTCTGCTTTGCCACGTGATGATTGTTGTTCTCGCTGTGCTGTTTTTGTGGTCTAATGCCACTATGTTCATTAACAAGTCCCCTCCAAAGATTCCTGAAGTTCATATCCCTGAAGAACCTATTCTTCAGCTTGCGTCTGGGCTCAGAATCGAGATCAACCGTGGATTCTCTTCTCTCCGTGAAATTGCATCAGGAAGGGATCTCAAGAAATTCCTCATTGCTATTGCCGGGTTATGGGTTCTCTCAATCTTGGGCGGTTGCTTCAACTTCTTGACATTGGCATACATAGCTCTTGTGTTGCTCTTCACGGTTCCTCTTGCCTACGACAAGTATGAAGACAAAGTCGACCCATTAGGTGAGAAAGCAATGATCGAGCTCAAGAAGCAGTATGCAGTGTTGGATGAGAAGGTGTTGAGCAAGATCCCACTTGGGCCGTTGAAGAACAAGAAGAAAGATTAGGGGTTTACACAAGGTTGTCCGTGGCTAGCAAAACGGGTGTTGTGAAATGGTATCGAAGTAATGTGTTTTGGGCGTTTTTTTAGGTGGCTCTTTCGGTTATGTGAATGAACTTGGAATTTTCCTGACTGGTTTGTTCTGTTGTTTATGTCATTGTTGATCAGCGTCGAGGGATAAAAGTAGTGATATTTCTTCTCTCTCTAAGCCTCTATATAACTAAGAATTTCAAGATATTTGAATTTTGCAATCTCGTGGTTAATGTTGTTCTTTCTCTATATTCTCCTCTTTCATTACATTTGTAAAATGGAATCAATGTCACGAATTGATAAGTTGTACGAAGCTTATACGTTTTATAGTTTCTTACTATATCATCCACTCACCGATCGTGTAAGTATAAGTATATGTAACGTCTTTATAACGTGTGGGGCCATCCACGGCCGAGAACGTTTTGTGAACCTCTTGTAATCTTGTTCCTAGAAAATGAATATCAGCTAACAATTTGC - >AT4G23630.1
AGTTATTCGAAACACAATACATCGGTTTGAGCATTTTTGTGTACTTCATTATTTATGGACCATAACTTGAGGTTTCAGTTTGTTTCCGAGCATCTTTTTGTAATGGGCCCATGAGAGAACTGATACTGGGCTTGATCAGATTGATGTCCATTATTTGTGCTTTATTGGGCTCCACTCTTTCTCACTCTCACATTTTTTACAAGACAGAAAGAACGTGACGCATGTACGAATGGCTGAATCTTCCTCCACGTGTCCTGCAATTAAAAAAATTAGATCGTACCGCATCATGCGTCAGCCGCGTGACACCTGATCATAACCTAGTTACTTAGCTCAGACATCGCCACGTATACGTCCCTCATGACGGGAAACGTTAACTCTGACGGCGTCACATGTCGACCATTCGTTTTGTGAAATGTATTTTGTGTTCCCATTTGGCTTTTTGCCTTTTTCCCCAAGGTTTGGCTCTAATTAAGTAAACGAACCTGTAGCTTCGGAAGTTCGTATCCGAACCAACCAACGGCTCAGATTAGTTTCATATTTTCAACGGCTGAGATTAGAGTTTCGATTTCTTTCTTCTATTTTAGGCTTCGAGATCTTTTCTTCTCAAAAGGTAAAAACTTTGGGAAGCAGCTAAAATACTGTGTTCTTTGTTTCTTCCATCGAAATCGAAAAAAGCTAAGATCTTTGCGTTTTGAAACGATGGCGGAAGAACATAAGCATGATGAATCTGTGATCGCTCCTGAGCCAGCTGTTGAGGTTGTGGAGAGAGAATCGTTGATGGATAAGATATCGGAGAAGATCCATCACGGTGGTGATTCTTCTTCGTCTTCTTCATCTTCTGATGATGAAGACGAGAAGAAGAAGACTAAGAAGCCCTCTTCTCCTTCGTCTTCTATGAAATCGAAAGTTTACCGCTTGTTCGGACGAGAGCAGCCTGTTCATAAGGTTCTCGGCGGTGGAAAGCCGGCTGATATATTCATGTGGAAGAACAAGAAGATGTCTGGTGGTGTACTTGGTGGTGCTACAGCTGCTTGGGTTGTGTTTGAATTGATGGAGTACCATCTTCTCACTCTGCTTTGCCACGTGATGATTGTTGTTCTCGCTGTGCTGTTTTTGTGGTCTAATGCCACTATGTTCATTAACAAGTCCCCTCCAAAGATTCCTGAAGTTCATATCCCTGAAGAACCTATTCTTCAGCTTGCGTCTGGGCTCAGAATCGAGATCAACCGTGGATTCTCTTCTCTCCGTGAAATTGCATCAGGAAGGGATCTCAAGAAATTCCTCATTGCTATTGCCGGGTTATGGGTTCTCTCAATCTTGGGCGGTTGCTTCAACTTCTTGACATTGGCATACATAGCTCTTGTGTTGCTCTTCACGGTTCCTCTTGCCTACGACAAGTATGAAGACAAAGTCGACCCATTAGGTGAGAAAGCAATGATCGAGCTCAAGAAGCAGTATGCAGTGTTGGATGAGAAGGTGTTGAGCAAGATCCCACTTGGGCCGTTGAAGAACAAGAAGAAAGATTAGGGGTTTACACAAGGTTGTCCGTGGCTAGCAAAACGGGTGTTGTGAAATGGTATCGAAGTAATGTGTTTTGGGCGTTTTTTTAGGTGGCTCTTTCGGTTATGTGAATGAACTTGGAATTTTCCTGACTGGTTTGTTCTGTTGTTTATGTCATTGTTGATCAGCGTCGAGGGATAAAAGTAGTGATATTTCTTCTCTCTCTAAGCCTCTATATAACTAAGAATTTCAAGATATTTGAATTTTGCAATCTCGTGGTTAATGTTGTTCTTTCTCTATATTCTCCTCTTTCATTACATTTGTAAAATGGAATCAATGTCACGAATTGATAAGTTGTACGAAGCTTATACGTTTTATAGTTTCTTACTATATCATCCACTCACCGATCGTGTAAGTATAAGTATATGTAACGTCTTTATAACGTGTGGGGCCATCCACGGCCGAGAACGTTTTGTGAACCTCTTGTAATCTTGTTCCTAGAAAATGAATATCAGCTAACAATTTGC
CDS Sequence
Protein Sequence