Information report for AT4G21900
Gene Details
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Functional Descriptions
- GO:0004526 — enables — ribonuclease P activity
- GO:0043144 — involved in — sno(s)RNA processing
- GO:0005634 — located in — nucleus
- GO:0001682 — acts upstream of or within — tRNA 5-leader removal GO:0001682 11700 P other metabolic processes IDA Enzyme assays NONE Publication:501749112|PMID:22549728 TAIR 2012-06-18 AT4G21900 locus:2141662 AT4G21900 acts upstream of or within mRNA processing GO:0006397 6230 P nucleobase-containing compound metabolic process IMP Anti-sense experiments NONE Publication:501749112|PMID:22549728 TAIR 2012-06-18 AT4G21900 gene:2141661 AT4G21900.1 located in chloroplast GO:0009507 175 C chloroplast ISM predicted protein features AnalysisReference:501780126 rkaundal 2018-08-31 AT4G21900 locus:2141662 AT4G21900 enables ribonuclease P activity GO:0004526 4053 F nuclease activity IDA none Publication:501749112|PMID:22549728 2021-04-01 AT4G21900 locus:2141662 AT4G21900 enables ribonuclease P activity GO:0004526 4053 F catalytic activity IBA none PANTHER:PTN001005190|TAIR:locus:2141662|UniProtKB:O15091|TAIR:locus:2059824|TAIR:locus:2045432 Communication:501741973 2023-06-07 AT4G21900 locus:2141662 AT4G21900 involved in mRNA processing GO:0006397 6230 P other metabolic processes IMP none Publication:501749112|PMID:22549728 2021-03-31 AT4G21900 locus:2141662 AT4G21900 involved in tRNA 5-leader removal
- GO:0001682 — acts upstream of or within — tRNA 5-leader removal GO:0001682 11700 P nucleobase-containing compound metabolic process IDA Enzyme assays NONE Publication:501749112|PMID:22549728 TAIR 2012-06-18
- GO:0006397 — involved in — mRNA processing
- GO:0043144 — acts upstream of or within — sno(s)RNA processing
- GO:0001682 — involved in — tRNA 5-leader removal GO:0001682 11700 P other metabolic processes IBA none PANTHER:PTN001005190|TAIR:locus:2045432|TAIR:locus:2141662|TAIR:locus:2059824 Communication:501741973 2023-06-07 AT4G21900 locus:2141662 AT4G21900 acts upstream of or within mRNA processing GO:0006397 6230 P other metabolic processes IMP Anti-sense experiments NONE Publication:501749112|PMID:22549728 TAIR 2012-06-18 AT4G21900 locus:2141662 AT4G21900 enables ribonuclease P activity GO:0004526 4053 F nuclease activity IBA none PANTHER:PTN001005190|TAIR:locus:2141662|UniProtKB:O15091|TAIR:locus:2059824|TAIR:locus:2045432 Communication:501741973 2023-06-07
Functional Keywords
Literature and News
- Transcriptional profiling of Arabidopsis tissues reveals the unique characteristics of the pollen transcriptome. DOI: 10.1104/pp.103.028241 ; PMID: 14500793
- Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. DOI: 10.1006/jmbi.2000.4315 ; PMID: 11152613
- A single Arabidopsis organellar protein has RNase P activity. DOI: 10.1038/nsmb.1812 ; PMID: 20473316
- PRORP proteins support RNase P activity in both organelles and the nucleus in Arabidopsis. DOI: 10.1101/gad.189514.112 ; PMID: 22549728
- tRNA processing by protein-only versus RNA-based RNase P: kinetic analysis reveals mechanistic differences. DOI: 10.1002/cbic.201200434 ; PMID: 22976545
- Crystallization and crystallographic analysis of an Arabidopsis nuclear proteinaceous RNase P. DOI: 10.1107/S2053230X15017033 ; PMID: 26527263
- Nuclear Protein-Only Ribonuclease P2 Structure and Biochemical Characterization Provide Insight into the Conserved Properties of tRNA 5' End Processing Enzymes. DOI: 10.1016/j.jmb.2015.11.025 ; PMID: 26655022
- Protein-only RNase P function in Escherichia coli: viability, processing defects and differences between PRORP isoenzymes. DOI: 10.1093/nar/gkx405 ; PMID: 28499021
Gene Resources
- UniProt: A0A178V462
- EMBL: CACRSJ010000109, CACSHJ010000095, LUHQ01000004
- AlphaFoldDB: A0A178V462
- EnsemblPlants: AT4G21900.1
- Gramene: AT4G21900.1
- KEGG: ath:AT4G21900
- Orthologous matrix: CLKLEMP
- ExpressionAtlas: AT4G21900
- InterPro: IPR011990, IPR031595, IPR033443
- PANTHER: PTHR13547, PTHR13547:SF20
- Gene3D: 1.25.40.10, 3.40.50.11980
- OrthoDB: A0A178V462
- SWISS-MODEL: A0A178V462
- Conserved Domain Database: cd18671
Sequences
cDNA Sequence
- >AT4G21900.1
GTTTATTTATTTTTATTTGTGTTAAAAATTATTTCTATTTTGTTTTGGAACAACAGCAAAATGAATTAAGCAATGAAATTGAAAAAACCTTCATTGCCTTCTTCATTGCTCTGCGCCGTCCCGCCTTGTCTCTCTCAAATTCGCTTACTCATCCCTCGCAGGGTAAGGGTTTCATCATCAACTTTCGCCAATGCAAAGCTTGTAACTTTGAGAAACCACACTGTTAATTTGCACATATATTACTGTTCCATGGCTGGTACTGATAACCGCCGCTCTCGCCACGACGACGAAAGCCCTAAAAATCCCAACAAGAAGAAGAAAGGAAACCGTAATCCAGAAAAGAGTCTCCTTATCAATCTTCATTCATGTTCCAAGAGAAAGGATCTCTCAGCTGCATTGGCTCTTTATGATGCAGCTATCACTTCCAGTGACATTCGCCTCAACCAGCAACACTTCCAATCCCTTCTTTACCTCTGCTCCGCGTTCATTAGTGACCCATCTCTTCAAACCGTTGCCATTGACCGTGGCTTTCAAATTTTTGACCGTATGGTTAGTTCTGGGATAAGTCCTAATGAATCATCTGTCACTGCAGTTGCACGACTAGCTGCTGCCAAGGGTGATGGAGACTATGCTTTCAAGCTTGTTAAAGACCTTGTTGCTGTTGGTGGTGTATCGGTCCCTCGTCTGAGAACTTATGCTCCGGCTTTGCTCTGTTTCTGTGATACTTTGGAGGCTGAAAAGGGTTATGAAGTGGAAGATCACATGGATGCTTCAGGTATTGTGTTGGAGGAGGCAGAGATCTCGGCTTTGCTAAAGGTAAGCGCTGCCACAGGCCGAGAAAACAAGGTTTATAGATATCTGCAGAAGTTAAGAGAATGTGTTGGCTGCGTTAGTGAAGAAACTTCAAAAGCAATCGAGGAATGGTTTTATGGAGTGAAAGCTAGCGAAGTTAGTGATAATGGGATTGGTTCTGATATTGAGCTGCTTAGAGCAGCTGTTTTGAAAAATGGGGGTGGGTGGCATGGTCTTGGGTGGGTTGGAGAAGGCAAATGGATTGTGAAGAAAGGTAATGTTAGCTCAGCCGGGAAATGTTTGAGCTGTGATGAGCATTTGGCTTGTGTTGATACCAATGAGGTAGAGACTGAAGATTTTGTGAATTCTTTGGTGACTTTGGCTATGGAGAGGAAGGCAAAGATGAATTCATGCGAGCCTATGGCGGATTTCAGTGAGTTTCAGGAGTGGCTTGAAAAGCATGGAGATTACGAAGCTATACTAGATGGAGCAAATATTGGGCTCTACCAACAAAATTTTGCAGATGGTGGTTTCAGTCTACCACAGCTTGAAGCTGTAGTGAAGGAACTTTACAATAAAAGTGGTAGCAAAAAACAGCCGCTAATTCTCTTGCACAAGAAACGGGTCAATGCGCTTTTAGAAAACCCGAATCACCGGAATCTTGTGGAAGAATGGATTAATAACAATGTCCTGTATGCGACTCCACCAGGTTCCAATGATGATTGGTATTGGCTCTACGCTGCTGCTAAACTCAAGTGTTTACTTGTGACTAATGATGAGATGAGAGATCACATTTTTGAACTATTAAGTAACAGTTTCTTCCAAAAATGGAAAGAAAGACATCAAGTTCGGTTTACCTTTGTGAAAGGCTGTCTCAAGCTTGAAATGCCACCTCCTTTTTCAGTTGTGATCCAGGAATCGGAGAAAGGATCATGGCACGTTCCAATCACGAGTCAAGACAAGGAGGAATCTTTAAGAAGTTGGATGTGCATTACAAGGCAGAGTTCATAGATTCACTCTATTTGTCTTAAGTATCATTTGAGCAGTCTTTGACGATTATGTTCAAAGAGCCAATTTTCCACCGTCAGATGTTAGAACTCGAATCAGTTTTTCACCATTGATTAGTCTTTTTTTTTTCTATCTCCCTTTTGGTAGAGTTAAAGCAAATGAAAAAGAATCCTCACTTGTCCCTTTTTTTTTTTAAAATTGAAATAGAGATGTTTCCAGTTTCAGTTTCTAA
CDS Sequence
Protein Sequence