Information report for AT4G21540
Gene Details
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Functional Descriptions
Functional Keywords
Literature and News
- A post-genomic approach to understanding sphingolipid metabolism in Arabidopsis thaliana. DOI: 10.1093/aob/mch071 ; PMID: 15037448
- Analyses of synteny between Arabidopsis thaliana and species in the Asteraceae reveal a complex network of small syntenic segments and major chromosomal rearrangements. DOI: 10.1534/genetics.105.049205 ; PMID: 16783026
- A leucine-rich repeat protein is required for growth promotion and enhanced seed production mediated by the endophytic fungus Piriformospora indica in Arabidopsis thaliana. DOI: 10.1111/j.1365-313X.2007.03028.x ; PMID: 17397506
- Involvement of sphingosine kinase in plant cell signalling. DOI: 10.1111/j.1365-313X.2008.03579.x ; PMID: 18557834
- Systematic analysis of protein subcellular localization and interaction using high-throughput transient transformation of Arabidopsis seedlings. DOI: 10.1111/j.1365-313X.2008.03596.x ; PMID: 18643979
- Phytosphingosine-phosphate is a signal for AtMPK6 activation and Arabidopsis response to chilling. DOI: 10.1111/j.1469-8137.2011.04017.x ; PMID: 22236066
- Acyl-lipid metabolism. DOI: 10.1199/tab.0161 ; PMID: 23505340
- Sphingosine kinase AtSPHK1 functions in fumonisin B1-triggered cell death in Arabidopsis. DOI: 10.1016/j.plaphy.2017.08.008 ; PMID: 28846870
- Arabidopsis sphingosine kinase and the effects of phytosphingosine-1-phosphate on stomatal aperture. DOI: 10.1104/pp.104.055806 ; PMID: 15665242
- The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. DOI: 10.1105/tpc.104.027078 ; PMID: 15539469
- Systematic analysis of protein subcellular localization and interaction using high-throughput transient transformation of Arabidopsis seedlings. DOI: 10.1111/j.1365-313X.2008.03596.x ; PMID: 18643979
- The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. DOI: 10.1105/tpc.104.027078 ; PMID: 15539469
- Systematic analysis of protein subcellular localization and interaction using high-throughput transient transformation of Arabidopsis seedlings. DOI: 10.1111/j.1365-313X.2008.03596.x ; PMID: 18643979
- The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. DOI: 10.1105/tpc.104.027078 ; PMID: 15539469
- Systematic analysis of protein subcellular localization and interaction using high-throughput transient transformation of Arabidopsis seedlings. DOI: 10.1111/j.1365-313X.2008.03596.x ; PMID: 18643979
Gene Resources
- UniProt: A0A178V174
- EMBL: CACSHJ010000095, LR881469, LUHQ01000004
- AlphaFoldDB: A0A178V174
- EnsemblPlants: AT4G21540.1
- Gramene: AT4G21540.1
- KEGG: ath:AT4G21540
- Orthologous matrix: TMGNFYA
- ExpressionAtlas: AT4G21540
- InterPro: IPR001206, IPR016064, IPR017438
- PANTHER: PTHR12358, PTHR12358:SF31
- SUPFAM: SSF111331
- PROSITE: PS50146
- Gene3D: 2.60.200.40, 3.40.50.10330
- OrthoDB: A0A178V174
- SWISS-MODEL: A0A178V174
Sequences
cDNA Sequence
- >AT4G21540.3
TAAGAAATTAAACATCTTCCAATGGTGAGTCTGTTTTTTGTGCTTACCAGATTAATGGTTGTGAACTGTCTCAGCATATTATTCCAATTTTAGAGCTCCGAAGCAGAGAGACTACAGAAAAGTCTAGTTCACTTTCTTAAATTAGTTAATACGGTGTCGTATTGGGACACTCTTCTTTAATTTTCTCTCTGGCCTAAGAGAAATCGACACGTCATAGCTAAGAGGAGGGGTATTGCCACGTCATCTCATCCACTCGCCAGGCTAGGCGCGTGAATTGCATTTCCCTCCTGATCGGAAAAGTCTTACCAAAGATTAGCTTTCAGGTCAATTTTTAAATCTTAGCTCTCACCAACGACGAAACTCGTCTCCCTCCATCTTGCTATGGATCGTCAGCCGGAGAGGGAGAATGATGAACTACCATCTCCGGCGATAATTTCCGACCGAGTTCTGGTAAATGGTGTTGTCACGCCGTTAACGTTGACCGCCGAGGGAGAGCTACGATCGACGGAATCTGGACGGCGGAAATCGACGTTGGCAAAAGAAATCCTGAGTTTCGTCGTGGAAGGTAACAAGGTTAGAGTAAAGACCTTGGTTGAGAAAGGAGGAGGAATTTGCTGTAGAGGAAGTGCTGGAGATTATGCGAGGAACGATTTCGTTTTCGAGCCTCTCTCTGATGAATCTAGAAAGCTTTGGTCCGATAAGTTCCATCAACACCTCGTCTCTCTCGGTCGGCCAAAGAAATTGCTTGTGTTTGTGAATCCGTTTGGCGGGAAGAAAACAGCGAGAAAGATATTTCAAGAGGAAGTAAAGCCATTGTTTGAAGATGCAAATATTCAACTTGAGATTCAAGAAACCAAGTATCAGTTGCATGCAAAGGAAATTGTTAGGTCCATGGATGTATCAAAATACGATGGTATTGTTTGTGTTAGCGGTGACGGTATCCTTGTTGAGGTTGTAAATGGACTGCTTGAAAGAGAAGACTGGAAGACTGCCATAAAATTGCCGATCGGAATGGTCCCTGCAGGAAGTGGTAATGGCATGATTAAATCATTGTTGGAACCGGTAGGGCTTCCTTGTAGTGCAACAAGTGCTACTATTTCGATAATCCGAGGTCGTACACGTTCTCTAGATGTAGCAACTATCTCACAAGGGACTACCAAATTCTTCAGTGTCTTGATGCTTGCTTGGGGTTTAGTGGCTGATATAGACATCGAGTCAGAGAAATTCAGATGGATGGGTAGTGCTCGCTTTGATATCTATGGTCTTCAGAGGATAATATGCTTAAGACAATACCATGGACGAATTCTATTTGTGCCAGCTCCTGGGTTCGAAAGCTATGGGCAACGAGCCAGTTGCAGTATAGATAAAGAGCCATCTGGTAGTGATAAGACACTCGTATACCAAGGACCTGATAGTAAACTTGAAAATCTGGATTGGAGAGAAATGAAAGGCCCATTTGTTTCAGTATGGCTTCATAATGTTCCCTGGGGTGCTGAGAACACTTTGGCTGCTCCTGACGCTAAGACTGTCCTAAACTAGCCTTGCTATCACTTATGACAAAGTTGAGTGATGGAACCCATGTCCAATCACCATATGCATCATATCTGAAGGTGAAGGCATTCGTACTGGAGCCAGGTGCACGCATAGACGAACCAGACAAGGAAGGAATCATAGATTCAGATGGAGAAGTTTTGGCAAGAGGAAGAAAATCGTACAAATGTGATCAAAAGGCTTTGATGTCTTACGACAAGCTTCAAATAAGTGTTGATCAAGGTTTAGCCACTCTCTTCTCTCCTGAATAATTCTGACTGATACATGAGATGTGATGAGATGAGATGAAGTTGTCCCTTGTGGCTATAATTTGATTGATGGACATTACAATACAAAAAATGAGAAGATGATTCGAGTTATATAGTAAATCCCTAAAGATTACCATTGAGTGTATTGTTTATTGTTGTATTGCTGTTGTATTGCAGTTTTGAGTTTTTTGTTAGAAAGTTGTGTGAACTAAGATATTGAGAAGACCATAAATACTAAATGTGAGATTTTTTTGAACTCTTGGTGTAAAGTGTAAACATATTTATGTTGGGGGATGGT - >AT4G21540.1
TAAGAAATTAAACATCTTCCAATGGTGAGTCTGTTTTTTGTGCTTACCAGATTAATGGTTGTGAACTGTCTCAGCATATTATTCCAATTTTAGAGCTCCGAAGCAGAGAGACTACAGAAAAGTCTAGTTCACTTTCTTAAATTAGTTAATACGGTGTCGTATTGGGACACTCTTCTTTAATTTTCTCTCTGGCCTAAGAGAAATCGACACGTCATAGCTAAGAGGAGGGGTATTGCCACGTCATCTCATCCACTCGCCAGGCTAGGCGCGTGAATTGCATTTCCCTCCTGATCGGAAAAGTCTTACCAAAGATTAGCTTTCAGGTCAATTTTTAAATCTTAGCTCTCACCAACGACGAAACTCGTCTCCCTCCATCTTGCTATGGATCGTCAGCCGGAGAGGGAGAATGATGAACTACCATCTCCGGCGATAATTTCCGACCGAGTTCTGGTAAATGGTGTTGTCACGCCGTTAACGTTGACCGCCGAGGGAGAGCTACGATCGACGGAATCTGGACGGCGGAAATCGACGTTGGCAAAAGAAATCCTGAGTTTCGTCGTGGAAGGTAACAAGGTTAGAGTAAAGACCTTGGTTGAGAAAGGAGGAGGAATTTGCTGTAGAGGAAGTGCTGGAGATTATGCGAGGAACGATTTCGTTTTCGAGCCTCTCTCTGATGAATCTAGAAAGCTTTGGTCCGATAAGTTCCATCAACACCTCGTCTCTCTCGGTCGGCCAAAGAAATTGCTTGTGTTTGTGAATCCGTTTGGCGGGAAGAAAACAGCGAGAAAGATATTTCAAGAGGAAGTAAAGCCATTGTTTGAAGATGCAAATATTCAACTTGAGATTCAAGAAACCAAGTATCAGTTGCATGCAAAGGAAATTGTTAGGTCCATGGATGTATCAAAATACGATGGTATTGTTTGTGTTAGCGGTGACGGTATCCTTGTTGAGGTTGTAAATGGACTGCTTGAAAGAGAAGACTGGAAGACTGCCATAAAATTGCCGATCGGAATGGTCCCTGCAGGAAGTGGTAATGGCATGATTAAATCATTGTTGGAACCGGTAGGGCTTCCTTGTAGTGCAACAAGTGCTACTATTTCGATAATCCGAGGTCGTACACGTTCTCTAGATGTAGCAACTATCTCACAAGGGACTACCAAATTCTTCAGTGTCTTGATGCTTGCTTGGGGTTTAGTGGCTGATATAGACATCGAGTCAGAGAAATTCAGATGGATGGGTAGTGCTCGCTTTGATATCTATGGTCTTCAGAGGATAATATGCTTAAGACAATACCATGGACGAATTCTATTTGTGCCAGCTCCTGGGTTCGAAAGCTATGGGCAACGAGCCAGTTGCAGTATAGATAAAGAGCCATCTGGTAGTGATAAGACACTCGTATACCAAGGACCTGATAGTAAACTTGAAAATCTGGATTGGAGAGAAATGAAAGGCCCATTTGTTTCAGTATGGCTTCATAATGTTCCCTGGGGTGCTGAGAACACTTTGGCTGCTCCTGACGCTAAGACTGTCCTAAACTAGCCTTGCTATCACTTATGACAAAGTTGAGTGATGGAACCCATGTCCAATCACCATATGCATCATATCTGAAGGTGAAGGCATTCGTACTGGAGCCAGGTGCACGCATAGACGAACCAGACAAGGAAGGAATCATAGATTCAGATGGAGAAGTTTTGGCAAGAGGAAGAAAATCGTACAAATGTGATCAAAAGGCTTTGATGTCTTACGACAAGCTTCAAATAAGTGTTGATCAAGGTTTAGCCACTCTCTTCTCTCCTGAATAATTCTGACTGATACATGAGATGTGATGAGATGAGATGAAGTTGTCCCTTGTGGCTATAATTTGATTGATGGACATTACAATACAAAAAATGAGAAGATGATTCGAGTTATATAGTAAATCCCTAAAGATTACCATTGAGTGTATTGTTTATTGTTGTATTGCTGTTGTATTGCAGTTTTGAGTTTTTTGTTAGAAAGTTGTGTGAACTAAGATATTGAGAAGACCATAAATACTAAATGTGAGATTTTTTTGAACTCTTGGTGTAAAGTGTAAACATATTTATGTTGGGGGATGGT - >AT4G21540.2
TAAGAAATTAAACATCTTCCAATGGTGAGTCTGTTTTTTGTGCTTACCAGATTAATGGTTGTGAACTGTCTCAGCATATTATTCCAATTTTAGAGCTCCGAAGCAGAGAGACTACAGAAAAGTCTAGTTCACTTTCTTAAATTAGTTAATACGGTGTCGTATTGGGACACTCTTCTTTAATTTTCTCTCTGGCCTAAGAGAAATCGACACGTCATAGCTAAGAGGAGGGGTATTGCCACGTCATCTCATCCACTCGCCAGGCTAGGCGCGTGAATTGCATTTCCCTCCTGATCGGAAAAGTCTTACCAAAGATTAGCTTTCAGGTCAATTTTTAAATCTTAGCTCTCACCAACGACGAAACTCGTCTCCCTCCATCTTGCTATGGATCGTCAGCCGGAGAGGGAGAATGATGAACTACCATCTCCGGCGATAATTTCCGACCGAGTTCTGGTAAATGGTGTTGTCACGCCGTTAACGTTGACCGCCGAGGGAGAGCTACGATCGACGGAATCTGGACGGCGGAAATCGACGTTGGCAAAAGAAATCCTGAGTTTCGTCGTGGAAGGTAACAAGGTTAGAGTAAAGACCTTGGTTGAGAAAGGAGGAGGAATTTGCTGTAGAGGAAGTGCTGGAGATTATGCGAGGAACGATTTCGTTTTCGAGCCTCTCTCTGATGAATCTAGAAAGCTTTGGTCCGATAAGTTCCATCAACACCTCGTCTCTCTCGGTCGGCCAAAGAAATTGCTTGTGTTTGTGAATCCGTTTGGCGGGAAGAAAACAGCGAGAAAGATATTTCAAGAGGAAGTAAAGCCATTGTTTGAAGATGCAAATATTCAACTTGAGATTCAAGAAACCAAGTATCAGTTGCATGCAAAGGAAATTGTTAGGTCCATGGATGTATCAAAATACGATGGTATTGTTTGTGTTAGCGGTGACGGTATCCTTGTTGAGGTTGTAAATGGACTGCTTGAAAGAGAAGACTGGAAGACTGCCATAAAATTGCCGATCGGAATGGTCCCTGCAGGAAGTGGTAATGGCATGATTAAATCATTGTTGGAACCGGTAGGGCTTCCTTGTAGTGCAACAAGTGCTACTATTTCGATAATCCGAGGTCGTACACGTTCTCTAGATGTAGCAACTATCTCACAAGGGACTACCAAATTCTTCAGTGTCTTGATGCTTGCTTGGGGTTTAGTGGCTGATATAGACATCGAGTCAGAGAAATTCAGATGGATGGGTAGTGCTCGCTTTGATATCTATGGTCTTCAGAGGATAATATGCTTAAGACAATACCATGGACGAATTCTATTTGTGCCAGCTCCTGGGTTCGAAAGCTATGGGCAACGAGCCAGTTGCAGTATAGATAAAGAGCCATCTGGTAGTGATAAGACACTCGTATACCAAGGACCTGATAGTAAACTTGAAAATCTGGATTGGAGAGAAATGAAAGGCCCATTTGTTTCAGTATGGCTTCATAATGTTCCCTGGGGTGCTGAGAACACTTTGGCTGCTCCTGACGCTAAGACTGTCCTAAACTAGCCTTGCTATCACTTATGACAAAGTTGAGTGATGGAACCCATGTCCAATCACCATATGCATCATATCTGAAGGTGAAGGCATTCGTACTGGAGCCAGGTGCACGCATAGACGAACCAGACAAGGAAGGAATCATAGATTCAGATGGAGAAGTTTTGGCAAGAGGAAGAAAATCGTACAAATGTGATCAAAAGGCTTTGATGTCTTACGACAAGCTTCAAATAAGTGTTGATCAAGGTTTAGCCACTCTCTTCTCTCCTGAATAATTCTGACTGATACATGAGATGTGATGAGATGAGATGAAGTTGTCCCTTGTGGCTATAATTTGATTGATGGACATTACAATACAAAAAATGAGAAGATGATTCGAGTTATATAGTAAATCCCTAAAGATTACCATTGAGTGTATTGTTTATTGTTGTATTGCTGTTGTATTGCAGTTTTGAGTTTTTTGTTAGAAAGTTGTGTGAACTAAGATATTGAGAAGACCATAAATACTAAATGTGAGATTTTTTTGAACTCTTGGTGTAAAGTGTAAACATATTTATGTTGGGGGATGGT
CDS Sequence
Protein Sequence