Information report for AT4G20130
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
Functional Keywords
Literature and News
- Bicistronic and fused monocistronic transcripts are derived from adjacent loci in the Arabidopsis genome. DOI: 10.1261/rna.7114505 ; PMID: 15659355
- pTAC2, -6, and -12 are components of the transcriptionally active plastid chromosome that are required for plastid gene expression. DOI: 10.1105/tpc.105.036392 ; PMID: 16326926
- Comparative gene mapping in Arabidopsis lyrata chromosomes 6 and 7 and A. thaliana chromosome IV: evolutionary history, rearrangements and local recombination rates. DOI: 10.1017/S0016672306008287 ; PMID: 17014743
- Characterization of Arabidopsis lines deficient in GAPC-1, a cytosolic NAD-dependent glyceraldehyde-3-phosphate dehydrogenase. DOI: 10.1104/pp.108.128769 ; PMID: 18820081
- A functional component of the transcriptionally active chromosome complex, Arabidopsis pTAC14, interacts with pTAC12/HEMERA and regulates plastid gene expression. DOI: 10.1104/pp.111.184762 ; PMID: 22010110
- Identification of essential subunits in the plastid-encoded RNA polymerase complex reveals building blocks for proper plastid development. DOI: 10.1104/pp.111.184515 ; PMID: 21949211
- Phosphoproteomics of Arabidopsis chloroplasts reveals involvement of the STN7 kinase in phosphorylation of nucleoid protein pTAC16. DOI: 10.1016/j.febslet.2012.03.061 ; PMID: 22616989
- Regulatory role of Arabidopsis pTAC14 in chloroplast development and plastid gene expression. DOI: 10.4161/psb.21618 ; PMID: 22902688
- TAC7, an essential component of the plastid transcriptionally active chromosome complex, interacts with FLN1, TAC10, TAC12 and TAC14 to regulate chloroplast gene expression in Arabidopsis thaliana. DOI: 10.1111/j.1399-3054.2012.01718.x ; PMID: 23082802
- The reduced plastid-encoded polymerase-dependent plastid gene expression leads to the delayed greening of the Arabidopsis fln2 mutant. DOI: 10.1371/journal.pone.0073092 ; PMID: 24019900
- Cytokinin-Regulated Expression of Arabidopsis thaliana PAP Genes and Its Implication for the Expression of Chloroplast-Encoded Genes. DOI: 10.3390/biom10121658 ; PMID: 33322466
- Arabidopsis Seedling Lethal 1 Interacting With Plastid-Encoded RNA Polymerase Complex Proteins Is Essential for Chloroplast Development. DOI: 10.3389/fpls.2020.602782 ; PMID: 33391315
- PAP8/pTAC6 Is Part of a Nuclear Protein Complex and Displays RNA Recognition Motifs of Viral Origin. DOI: 10.3390/ijms23063059 ; PMID: 35328480
- The Arabidopsis thaliana chloroplast proteome reveals pathway abundance and novel protein functions. DOI: 10.1016/j.cub.2004.02.039 ; PMID: 15028209
- pTAC2, -6, and -12 are components of the transcriptionally active plastid chromosome that are required for plastid gene expression. DOI: 10.1105/tpc.105.036392 ; PMID: 16326926
Gene Resources
- UniProt: A0A1P8B373
- EMBL: CP002687
- AlphaFoldDB: A0A1P8B373
- EnsemblPlants: AT4G20130.2, AT4G20130.3
- Gramene: AT4G20130.2, AT4G20130.3
- ExpressionAtlas: AT4G20130
- InterPro: IPR001214, IPR015353, IPR036464
- PANTHER: PTHR13271, PTHR13271:SF54
- SUPFAM: SSF81822, SSF82199
- PROSITE: PS50280
- Gene3D: 3.90.1410.10, 3.90.1420.10
- SWISS-MODEL: A0A1P8B373
- Conserved Domain Database: cd10527
Sequences
cDNA Sequence
- >AT4G20130.2
GTGTGTCTGTCTTTGTCTGAATTTTCTGAGTACTCCTCATGTTTTTTCCGGTCGGACAAAGGGTTTCTGCAACGGAATTGTGTCAGCACCAAGACCCAGAAGCAATTTATTAAGAGACAGACAAAATGGTGTACGACCCATCAAAGTTGCGTCTATTGAGACACAACCTTTCCCTCTGTTTCAATCTCCTGCTTCCGAAGAATCTTCCTCGTCCGAGCTGGAGACAGCAGATCCGGATTTCTACAAAATTGGCTATGTTCGAAGTGTGAGAGCTTATGGAGTTGAGTTTAAAGAAGGTCCAGATGGTTTTGGTGTCTATGCTTCTAAGGATATCGAACCTCGCCGTCGAGCTAGAGTGATTATGGAGATTCCTCTTGAACTGATGATAACCATTAGACAGAAGCACCCTTGGATGTTTTTCCCTGATATTGTACCAATTGGTCATCCTATTTTCGATATCATTAACTCGACTGATCCTGAGATTGATTGGGATATCAGATTAGCGTGTCTTCTGTTATTCTCTTTTGATCGAGATGATCACTTCTGGCGGCTCTATGGCGATTTCCTGCCGGCTGCTGATGAGTGCAGCAGCTTGCTTTTAGCTACAGAGGAAGACCTTGCGGAGCTTCAAGATCCTGATCTTGTTTCAACTATCAGACAACAACAGAAACGAATCCTAGATTTTTGGGAAAAGAATTGGCATTCAGGTGTTCCTCTCAAAATCAAAAGGCTTGCCGAGGATCCAGAAAGATTCATATGGGCGGTTAGTATGGCACAGACACGATGCATCAGTATGCAAACTAGGGTCGGTGCTTTGGTTCAGGAATTAAATATGATGATTCCTTATGCTGACATGCTAAACCACTCATTTGAACCAAACTGTTTCCTACATTGGCGTCCTAAAGATCGCATGCTGGAGGTTATGTCAAATGCTGGTCAAGACATTAAGAAAGGCGAAGAGATGACGATTAATTACATGCCAGGCCAGAAAAACAACATGCTTATGGAAAGATACGGCTTCTCAACTCCTGTGAATCCGTGGGATGCTATAAAGTTCTCTGGAGATTCTCGCATCCATTTAAATTCCTTTTTATCGGTCTTCAATATTTATGGTCTTCCTGAAGAATATTACCATGACAGCGAGTTATCGAGGGGCGATACTTTTGTTGATGGAGCAGTTATCGCTGCAGCAAGAACATTACCTACTTGGTCAGACATAGATCTTCCTCCAATACCGAGTGCGGAAAGAAAAGCAGTTAAAGAATTGCAAGATGAATGTCGAAAGATGCTTGCGGAATATCCCACAACAGCAGAGCAAGACCAGAAGTTGCTAGATTCAATGTCAGAAGCAAGGACAACATTTGCAACAGCGGTTAAGTATAGAATGCACAGAAAGATGTTCATCGGAAAAATTATCAAGGCACTTGACATCTATCAAGAACGGTTACTCTATTGATTCAAGCAAAAAATAATTATGAGCTGAGTGAGATTCATACTTGGTGCTCACTCCCTTGAGCTACTTAGAAACTGCACCATGTAATTGAAAGGTTCCTGTTTTTTTTTTTGTTTAGTGTAAGGTTATGTATTTGTATGGAACAGTTAGACTAAGTGTGTTAGTTTGTTTTAATCGCAATCACAAACAAATCATAACCTCTTCTTTTCTTGGCTGCTTTAATGAGTTTGATTAGCCAACAAACGCTTTGGA - >AT4G20130.3
GTGTGTCTGTCTTTGTCTGAATTTTCTGAGTACTCCTCATGTTTTTTCCGGTCGGACAAAGGGTTTCTGCAACGGAATTGTGTCAGCACCAAGACCCAGAAGCAATTTATTAAGAGACAGACAAAATGGTGTACGACCCATCAAAGTTGCGTCTATTGAGACACAACCTTTCCCTCTGTTTCAATCTCCTGCTTCCGAAGAATCTTCCTCGTCCGAGCTGGAGACAGCAGATCCGGATTTCTACAAAATTGGCTATGTTCGAAGTGTGAGAGCTTATGGAGTTGAGTTTAAAGAAGGTCCAGATGGTTTTGGTGTCTATGCTTCTAAGGATATCGAACCTCGCCGTCGAGCTAGAGTGATTATGGAGATTCCTCTTGAACTGATGATAACCATTAGACAGAAGCACCCTTGGATGTTTTTCCCTGATATTGTACCAATTGGTCATCCTATTTTCGATATCATTAACTCGACTGATCCTGAGATTGATTGGGATATCAGATTAGCGTGTCTTCTGTTATTCTCTTTTGATCGAGATGATCACTTCTGGCGGCTCTATGGCGATTTCCTGCCGGCTGCTGATGAGTGCAGCAGCTTGCTTTTAGCTACAGAGGAAGACCTTGCGGAGCTTCAAGATCCTGATCTTGTTTCAACTATCAGACAACAACAGAAACGAATCCTAGATTTTTGGGAAAAGAATTGGCATTCAGGTGTTCCTCTCAAAATCAAAAGGCTTGCCGAGGATCCAGAAAGATTCATATGGGCGGTTAGTATGGCACAGACACGATGCATCAGTATGCAAACTAGGGTCGGTGCTTTGGTTCAGGAATTAAATATGATGATTCCTTATGCTGACATGCTAAACCACTCATTTGAACCAAACTGTTTCCTACATTGGCGTCCTAAAGATCGCATGCTGGAGGTTATGTCAAATGCTGGTCAAGACATTAAGAAAGGCGAAGAGATGACGATTAATTACATGCCAGGCCAGAAAAACAACATGCTTATGGAAAGATACGGCTTCTCAACTCCTGTGAATCCGTGGGATGCTATAAAGTTCTCTGGAGATTCTCGCATCCATTTAAATTCCTTTTTATCGGTCTTCAATATTTATGGTCTTCCTGAAGAATATTACCATGACAGCGAGTTATCGAGGGGCGATACTTTTGTTGATGGAGCAGTTATCGCTGCAGCAAGAACATTACCTACTTGGTCAGACATAGATCTTCCTCCAATACCGAGTGCGGAAAGAAAAGCAGTTAAAGAATTGCAAGATGAATGTCGAAAGATGCTTGCGGAATATCCCACAACAGCAGAGCAAGACCAGAAGTTGCTAGATTCAATGTCAGAAGCAAGGACAACATTTGCAACAGCGGTTAAGTATAGAATGCACAGAAAGATGTTCATCGGAAAAATTATCAAGGCACTTGACATCTATCAAGAACGGTTACTCTATTGATTCAAGCAAAAAATAATTATGAGCTGAGTGAGATTCATACTTGGTGCTCACTCCCTTGAGCTACTTAGAAACTGCACCATGTAATTGAAAGGTTCCTGTTTTTTTTTTTGTTTAGTGTAAGGTTATGTATTTGTATGGAACAGTTAGACTAAGTGTGTTAGTTTGTTTTAATCGCAATCACAAACAAATCATAACCTCTTCTTTTCTTGGCTGCTTTAATGAGTTTGATTAGCCAACAAACGCTTTGGA - >AT4G20130.1
GTGTGTCTGTCTTTGTCTGAATTTTCTGAGTACTCCTCATGTTTTTTCCGGTCGGACAAAGGGTTTCTGCAACGGAATTGTGTCAGCACCAAGACCCAGAAGCAATTTATTAAGAGACAGACAAAATGGTGTACGACCCATCAAAGTTGCGTCTATTGAGACACAACCTTTCCCTCTGTTTCAATCTCCTGCTTCCGAAGAATCTTCCTCGTCCGAGCTGGAGACAGCAGATCCGGATTTCTACAAAATTGGCTATGTTCGAAGTGTGAGAGCTTATGGAGTTGAGTTTAAAGAAGGTCCAGATGGTTTTGGTGTCTATGCTTCTAAGGATATCGAACCTCGCCGTCGAGCTAGAGTGATTATGGAGATTCCTCTTGAACTGATGATAACCATTAGACAGAAGCACCCTTGGATGTTTTTCCCTGATATTGTACCAATTGGTCATCCTATTTTCGATATCATTAACTCGACTGATCCTGAGATTGATTGGGATATCAGATTAGCGTGTCTTCTGTTATTCTCTTTTGATCGAGATGATCACTTCTGGCGGCTCTATGGCGATTTCCTGCCGGCTGCTGATGAGTGCAGCAGCTTGCTTTTAGCTACAGAGGAAGACCTTGCGGAGCTTCAAGATCCTGATCTTGTTTCAACTATCAGACAACAACAGAAACGAATCCTAGATTTTTGGGAAAAGAATTGGCATTCAGGTGTTCCTCTCAAAATCAAAAGGCTTGCCGAGGATCCAGAAAGATTCATATGGGCGGTTAGTATGGCACAGACACGATGCATCAGTATGCAAACTAGGGTCGGTGCTTTGGTTCAGGAATTAAATATGATGATTCCTTATGCTGACATGCTAAACCACTCATTTGAACCAAACTGTTTCCTACATTGGCGTCCTAAAGATCGCATGCTGGAGGTTATGTCAAATGCTGGTCAAGACATTAAGAAAGGCGAAGAGATGACGATTAATTACATGCCAGGCCAGAAAAACAACATGCTTATGGAAAGATACGGCTTCTCAACTCCTGTGAATCCGTGGGATGCTATAAAGTTCTCTGGAGATTCTCGCATCCATTTAAATTCCTTTTTATCGGTCTTCAATATTTATGGTCTTCCTGAAGAATATTACCATGACAGCGAGTTATCGAGGGGCGATACTTTTGTTGATGGAGCAGTTATCGCTGCAGCAAGAACATTACCTACTTGGTCAGACATAGATCTTCCTCCAATACCGAGTGCGGAAAGAAAAGCAGTTAAAGAATTGCAAGATGAATGTCGAAAGATGCTTGCGGAATATCCCACAACAGCAGAGCAAGACCAGAAGTTGCTAGATTCAATGTCAGAAGCAAGGACAACATTTGCAACAGCGGTTAAGTATAGAATGCACAGAAAGATGTTCATCGGAAAAATTATCAAGGCACTTGACATCTATCAAGAACGGTTACTCTATTGATTCAAGCAAAAAATAATTATGAGCTGAGTGAGATTCATACTTGGTGCTCACTCCCTTGAGCTACTTAGAAACTGCACCATGTAATTGAAAGGTTCCTGTTTTTTTTTTTGTTTAGTGTAAGGTTATGTATTTGTATGGAACAGTTAGACTAAGTGTGTTAGTTTGTTTTAATCGCAATCACAAACAAATCATAACCTCTTCTTTTCTTGGCTGCTTTAATGAGTTTGATTAGCCAACAAACGCTTTGGA
CDS Sequence
Protein Sequence