Information report for AT4G19230
Gene Details
|
|
Functional Descriptions
- PO:0000056 — flower bud — floral bud (exact), yema floral (Spanish, exact), 花芽 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009047 — stem — caña (Spanish, exact), culm (exact), eje primario (Spanish, exact), primary axis (exact), primary stem (exact), tallo (Spanish, exact), tronco (Spanish, exact), 茎 (Japanese, exact), bole (narrow), cane (narrow), caudex (narrow), caudices (narrow), core (narrow), primocane (narrow), scape (narrow), stalk (narrow), trunk (narrow)
- PO:0008011 — plant embryo vascular system — sistema vascular del embrión (Spanish, exact), 胚維管系 (Japanese, exact)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009084 — pericarp — pericarpo (Spanish, exact), portion of pericarp tissue (exact), 果皮 (Japanese, exact), fruit peel (related), fruit rind (related)
- GO:0009687 — acts upstream of or within — abscisic acid metabolic process
- GO:0016125 — involved in — sterol metabolic process
- GO:0005506 — enables — iron ion binding
- GO:0010295 — enables — (+)-abscisic acid 8-hydroxylase activity GO:0010295 25154 F catalytic activity IBA none PANTHER:PTN001958088|TAIR:locus:2158480|UniProtKB:Q949P1 Communication:501741973 2022-04-20 AT4G19230 locus:2134781 AT4G19230 involved in abscisic acid metabolic process GO:0009687 4969 P other cellular processes IBA none PANTHER:PTN000669512|UniProtKB:Q949P1 Communication:501741973 2021-03-31 AT4G19230 locus:2134781 AT4G19230 acts upstream of or within defense response to fungus GO:0050832 18013 P response to biotic stimulus IEP Transcript levels (e.g. RT-PCR) NONE Publication:501733636|PMID:19656045 TAIR 2009-10-14 AT4G19230 locus:2134781 AT4G19230 acts upstream of or within abscisic acid metabolic process GO:0009687 4969 P other metabolic processes IMP biochemical/chemical analysis NONE Publication:501718706|PMID:16543410 TAIR 2006-08-17 AT4G19230 gene:2134780 AT4G19230.1 located in chloroplast GO:0009507 175 C chloroplast ISM predicted protein features AnalysisReference:501780126 rkaundal 2018-08-31 AT4G19230 locus:2134781 AT4G19230 involved in abscisic acid metabolic process GO:0009687 4969 P lipid metabolic process IBA none PANTHER:PTN000669512|UniProtKB:Q949P1 Communication:501741973 2021-03-31 AT4G19230 locus:2134781 AT4G19230 involved in sterol metabolic process GO:0016125 7324 P lipid metabolic process IBA none PANTHER:PTN001209376|PomBase:SPAC19A8.04|RGD:2481|SGD:S000001049|TAIR:locus:2027312|UniProtKB:P9WPP9|SGD:S000004617|CGD:CAL0000176310 Communication:501741973 2023-06-07 AT4G19230 locus:2134781 AT4G19230 involved in abscisic acid metabolic process GO:0009687 4969 P other metabolic processes IBA none PANTHER:PTN000669512|UniProtKB:Q949P1 Communication:501741973 2021-03-31 AT4G19230 locus:2134781 AT4G19230 involved in abscisic acid catabolic process GO:0046345 13216 P other cellular processes IEA none UniPathway:UPA00093 AnalysisReference:501757242 2023-06-11 AT4G19230 locus:2134781 AT4G19230 involved in abscisic acid catabolic process GO:0046345 13216 P lipid metabolic process IEA none UniPathway:UPA00093 AnalysisReference:501757242 2023-06-11 AT4G19230 locus:2134781 AT4G19230 acts upstream of or within abscisic acid metabolic process GO:0009687 4969 P other cellular processes IMP biochemical/chemical analysis NONE Publication:501718706|PMID:16543410 TAIR 2006-08-17 AT4G19230 locus:2134781 AT4G19230 involved in abscisic acid catabolic process GO:0046345 13216 P catabolic process IEA none UniPathway:UPA00093 AnalysisReference:501757242 2023-06-11 AT4G19230 locus:2134781 AT4G19230 acts upstream of or within release of seed from dormancy GO:0048838 23521 P reproduction IMP Analysis of overexpression/ectopic expression phenotype NONE Publication:501718815|PMID:16507085 TAIR 2006-08-17 AT4G19230 locus:2134781 AT4G19230 enables (+)-abscisic acid 8-hydroxylase activity
- GO:0050832 — acts upstream of or within — defense response to fungus
- GO:0048838 — acts upstream of or within — release of seed from dormancy
- GO:0046345 — involved in — abscisic acid catabolic process
- GO:0009639 — acts upstream of or within — response to red or far red light
- GO:0020037 — enables — heme binding
Functional Keywords
- flower bud , root , flower , stem , root , plant embryo vascular system , plant embryo , pericarp
Literature and News
- When defense pathways collide. The response of Arabidopsis to a combination of drought and heat stress. DOI: 10.1104/pp.103.033431 ; PMID: 15047901
- Abscisic acid biosynthesis and catabolism. DOI: 10.1146/annurev.arplant.56.032604.144046 ; PMID: 15862093
- CYP707A1 and CYP707A2, which encode abscisic acid 8'-hydroxylases, are indispensable for proper control of seed dormancy and germination in Arabidopsis. DOI: 10.1104/pp.106.079475 ; PMID: 16543410
- Seed dormancy and ABA metabolism in Arabidopsis and barley: the role of ABA 8'-hydroxylase. DOI: 10.1111/j.1365-313X.2006.02659.x ; PMID: 16507085
- Regulation of hormone metabolism in Arabidopsis seeds: phytochrome regulation of abscisic acid metabolism and abscisic acid regulation of gibberellin metabolism. DOI: 10.1111/j.1365-313X.2006.02881.x ; PMID: 17010113
- Nitric oxide-induced rapid decrease of abscisic acid concentration is required in breaking seed dormancy in Arabidopsis. DOI: 10.1111/j.1469-8137.2009.02899.x ; PMID: 19522839
- Disease-specific expression of host genes during downy mildew infection of Arabidopsis. DOI: 10.1094/MPMI-22-9-1104 ; PMID: 19656045
- Rapid accumulation of NO regulates ABA catabolism and seed dormancy during imbibition in Arabidopsis. DOI: 10.4161/psb.4.9.9532 ; PMID: 19847111
- Genome-wide analysis of endogenous abscisic acid-mediated transcription in dry and imbibed seeds of Arabidopsis using tiling arrays. DOI: 10.1111/j.1365-313X.2010.04135.x ; PMID: 20088898
- ABA 9'-hydroxylation is catalyzed by CYP707A in Arabidopsis. DOI: 10.1016/j.phytochem.2011.02.004 ; PMID: 21414645
- The Arabidopsis mutant, fy-1, has an ABA-insensitive germination phenotype. DOI: 10.1093/jxb/err452 ; PMID: 22282534
- A bZIP protein, VIP1, is a regulator of osmosensory signaling in Arabidopsis. DOI: 10.1104/pp.112.197020 ; PMID: 22452852
- ABI4 regulates primary seed dormancy by regulating the biogenesis of abscisic acid and gibberellins in arabidopsis. DOI: 10.1371/journal.pgen.1003577 ; PMID: 23818868
- Abscisic acid uridine diphosphate glucosyltransferases play a crucial role in abscisic acid homeostasis in Arabidopsis. DOI: 10.1104/pp.114.239210 ; PMID: 24676855
- Analysis of functions of VIP1 and its close homologs in osmosensory responses of Arabidopsis thaliana. DOI: 10.1371/journal.pone.0103930 ; PMID: 25093810
- Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue. DOI: 10.1016/j.molp.2016.02.009 ; PMID: 26970019
- AtPER1 enhances primary seed dormancy and reduces seed germination by suppressing the ABA catabolism and GA biosynthesis in Arabidopsis seeds. DOI: 10.1111/tpj.14542 ; PMID: 31536657
- Histone Deacetylase HDA9 With ABI4 Contributes to Abscisic Acid Homeostasis in Drought Stress Response. DOI: 10.3389/fpls.2020.00143 ; PMID: 32158458
- PWR/HDA9/ABI4 Complex Epigenetically Regulates ABA Dependent Drought Stress Tolerance in Arabidopsis. DOI: 10.3389/fpls.2020.00623 ; PMID: 32528497
- The H3K27me3 Demethylase RELATIVE OF EARLY FLOWERING6 Suppresses Seed Dormancy by Inducing Abscisic Acid Catabolism. DOI: 10.1104/pp.20.01255 ; PMID: 33037128
- Disruption of BG14 results in enhanced callose deposition in developing seeds and decreases seed longevity and seed dormancy in Arabidopsis. DOI: 10.1111/tpj.16102 ; PMID: 36625794
- The Arabidopsis endosperm is a temperature-sensing tissue that implements seed thermoinhibition through phyB. DOI: 10.1038/s41467-023-36903-4 ; PMID: 36882415
- Histone Deacetylases Regulate MORE AXILLARY BRANCHED 2-Dependent Germination of Arabidopsis thaliana. DOI: 10.1093/pcp/pcad047 ; PMID: 37279553
Gene Resources
- UniProt: A8MRX5
- EMBL: CP002687
- AlphaFoldDB: A8MRX5
- EnsemblPlants: AT4G19230.2
- Gramene: AT4G19230.2
- ExpressionAtlas: AT4G19230
- InterPro: IPR001128, IPR002401, IPR017972
- PANTHER: PTHR24286, PTHR24286:SF10
- SUPFAM: SSF48264
- PROSITE: PS00086
- Gene3D: 1.10.630.10
- OrthoDB: A8MRX5
- SWISS-MODEL: A8MRX5
- Conserved Domain Database: cd11043
Sequences
cDNA Sequence
- >AT4G19230.2
ATCACAAACATTTCTTCCATTACATTAAAACTCCAAAAAATTCATTTTTGTTTTCTTTTAGAGTTCACAAGTTCTTCGTTGTTCAGCTACTCCCACTGTCATAACACGAAGTGGGTTTTTTTCTGATCAAAGAACAAAAACAAAAATGGATATCTCCGCCTTGTTTCTCACTCTCTTCGCCGGAAGTCTCTTCCTTTACTTTCTCCGGTGTCTAATCTCTCAGCGCCGCTTTGGATCTTCCAAACTCCCACTCCCTCCGGGAACAATGGGTTGGCCTTACGTCGGAGAAACTTTCCAGCTTTACTCTCAAGACCCTAATGTCTTTTTCCAATCAAAACAGAAAAGGTATGGATCGGTGTTTAAGACTCATGTATTGGGATGTCCATGTGTGATGATCTCGAGTCCAGAGGCTGCTAAGTTCGTGCTGGTGACGAAATCTCATCTCTTTAAACCAACTTTTCCGGCGAGTAAAGAGAGGATGTTGGGGAAACAAGCCATCTTCTTCCACCAGGGTGATTATCACGCTAAACTCAGGAAGCTTGTTCTTCGTGCTTTTATGCCTGAATCTATCAGAAACATGGTTCCTGATATTGAATCCATCGCTCAAGACTCTCTCCGAAGTTGGGAGGGAACAATGATCAACACTTACCAAGAAATGAAAACATACACCTTCAACGTTGCGTTGCTATCGATCTTCGGAAAAGACGAGGTTTTATACAGAGAAGATCTAAAACGATGCTACTACATTCTCGAGAAAGGTTACAATTCGATGCCAGTGAATCTCCCTGGAACACTTTTCCACAAATCAATGAAAGCTCGGAAGGAACTCTCACAGATCCTCGCTAGAATCTTATCAGAGAGAAGACAGAACGGTTCCTCACACAACGATCTTCTCGGATCATTCATGGGAGACAAAGAAGAGCTAACCGACGAACAGATCGCCGACAACATAATCGGAGTAATCTTCGCCGCTAGAGACACGACGGCGAGTGTGATGTCGTGGATCCTCAAGTACCTAGCCGAGAATCCCAACGTTCTAGAAGCCGTTACTGAAGAACAAATGGCAATAAGGAAAGACAAAGAAGAAGGAGAGTCTCTAACTTGGGGAGATACAAAGAAGATGCCATTAACTTCAAGAGTTATTCAAGAAACATTAAGAGTCGCTTCAATCTTATCTTTCACATTCAGAGAAGCTGTCGAAGATGTCGAATACGAAGGATATTTGATACCTAAAGGATGGAAAGTGTTACCCCTATTCAGAAACATTCATCATAGTGCTGATATTTTTTCTAATCCGGGGAAATTTGATCCATCAAGATTCGAGGTGGCTCCAAAACCCAATACGTTCATGCCATTTGGCAATGGAACCCACTCGTGTCCTGGAAATGAATTAGCCAAGCTTGAGATGTCTATTATGATTCATCATCTCACCACCAAGTACAGGTTTGGTCAATTGTTGGAGCGAGCGACGGGATTCAGTATGGGCCATTCGCGCTTCCCCAAAACGGACTGCCCATTGTGCTGGCCCGGAAGCCGGAGATCGAAGTGTAGAATGACAGAATTGCCTTTAGCTTTTCTATATTTGGAAAGAGGAGACTAGAGAAGAAGAATAAATAATTCTTTCTTTCTTTATCAAGAAAAAAAGATAGAGATGGAGGAAAACAGGTTCAAGATTTTGGTAGAAAAATATTCCCCAAATGGGATCAAGGAGAAAACACCAAGTGTACAAAAACTTCAATTTTATTTTTCTTGACTTTCTTTAGTTTTTTTTTTTTGAGTTTTTAATTTTAATTTAAGATGGGAAAAGCTAGTAATTGAATTTAAAAAAACAGGGGAAAATGTTAGTACAAGTCTCTCATGTATTTTTTTTTTGTTTTTCCTGAAAATATCTTATGGTTATGTTATAACTATTTCCTCCTGGATTGAGACTTCCCTTGTTTTTTGAATAAATTTTTTTTGTTATATTTTTATATATATATTTAAAATATCTGTTTT - >AT4G19230.1
ATCACAAACATTTCTTCCATTACATTAAAACTCCAAAAAATTCATTTTTGTTTTCTTTTAGAGTTCACAAGTTCTTCGTTGTTCAGCTACTCCCACTGTCATAACACGAAGTGGGTTTTTTTCTGATCAAAGAACAAAAACAAAAATGGATATCTCCGCCTTGTTTCTCACTCTCTTCGCCGGAAGTCTCTTCCTTTACTTTCTCCGGTGTCTAATCTCTCAGCGCCGCTTTGGATCTTCCAAACTCCCACTCCCTCCGGGAACAATGGGTTGGCCTTACGTCGGAGAAACTTTCCAGCTTTACTCTCAAGACCCTAATGTCTTTTTCCAATCAAAACAGAAAAGGTATGGATCGGTGTTTAAGACTCATGTATTGGGATGTCCATGTGTGATGATCTCGAGTCCAGAGGCTGCTAAGTTCGTGCTGGTGACGAAATCTCATCTCTTTAAACCAACTTTTCCGGCGAGTAAAGAGAGGATGTTGGGGAAACAAGCCATCTTCTTCCACCAGGGTGATTATCACGCTAAACTCAGGAAGCTTGTTCTTCGTGCTTTTATGCCTGAATCTATCAGAAACATGGTTCCTGATATTGAATCCATCGCTCAAGACTCTCTCCGAAGTTGGGAGGGAACAATGATCAACACTTACCAAGAAATGAAAACATACACCTTCAACGTTGCGTTGCTATCGATCTTCGGAAAAGACGAGGTTTTATACAGAGAAGATCTAAAACGATGCTACTACATTCTCGAGAAAGGTTACAATTCGATGCCAGTGAATCTCCCTGGAACACTTTTCCACAAATCAATGAAAGCTCGGAAGGAACTCTCACAGATCCTCGCTAGAATCTTATCAGAGAGAAGACAGAACGGTTCCTCACACAACGATCTTCTCGGATCATTCATGGGAGACAAAGAAGAGCTAACCGACGAACAGATCGCCGACAACATAATCGGAGTAATCTTCGCCGCTAGAGACACGACGGCGAGTGTGATGTCGTGGATCCTCAAGTACCTAGCCGAGAATCCCAACGTTCTAGAAGCCGTTACTGAAGAACAAATGGCAATAAGGAAAGACAAAGAAGAAGGAGAGTCTCTAACTTGGGGAGATACAAAGAAGATGCCATTAACTTCAAGAGTTATTCAAGAAACATTAAGAGTCGCTTCAATCTTATCTTTCACATTCAGAGAAGCTGTCGAAGATGTCGAATACGAAGGATATTTGATACCTAAAGGATGGAAAGTGTTACCCCTATTCAGAAACATTCATCATAGTGCTGATATTTTTTCTAATCCGGGGAAATTTGATCCATCAAGATTCGAGGTGGCTCCAAAACCCAATACGTTCATGCCATTTGGCAATGGAACCCACTCGTGTCCTGGAAATGAATTAGCCAAGCTTGAGATGTCTATTATGATTCATCATCTCACCACCAAGTACAGGTTTGGTCAATTGTTGGAGCGAGCGACGGGATTCAGTATGGGCCATTCGCGCTTCCCCAAAACGGACTGCCCATTGTGCTGGCCCGGAAGCCGGAGATCGAAGTGTAGAATGACAGAATTGCCTTTAGCTTTTCTATATTTGGAAAGAGGAGACTAGAGAAGAAGAATAAATAATTCTTTCTTTCTTTATCAAGAAAAAAAGATAGAGATGGAGGAAAACAGGTTCAAGATTTTGGTAGAAAAATATTCCCCAAATGGGATCAAGGAGAAAACACCAAGTGTACAAAAACTTCAATTTTATTTTTCTTGACTTTCTTTAGTTTTTTTTTTTTGAGTTTTTAATTTTAATTTAAGATGGGAAAAGCTAGTAATTGAATTTAAAAAAACAGGGGAAAATGTTAGTACAAGTCTCTCATGTATTTTTTTTTTGTTTTTCCTGAAAATATCTTATGGTTATGTTATAACTATTTCCTCCTGGATTGAGACTTCCCTTGTTTTTTGAATAAATTTTTTTTGTTATATTTTTATATATATATTTAAAATATCTGTTTT
CDS Sequence
Protein Sequence