Information report for AT4G18130
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- GO:0009888 — acts upstream of or within — tissue development
- GO:0019538 — acts upstream of or within — protein metabolic process
- GO:0010228 — acts upstream of or within — vegetative to reproductive phase transition of meristem
- GO:0000155 — enables — phosphorelay sensor kinase activity
- GO:0009649 — acts upstream of or within — entrainment of circadian clock
- GO:0005515 — enables — protein binding
- GO:0004673 — enables — protein histidine kinase activity
- GO:0009585 — involved in — red, far-red light phototransduction
- GO:0042803 — enables — protein homodimerization activity
- GO:0010468 — acts upstream of or within — regulation of gene expression
- GO:0006355 — involved in — regulation of DNA-templated transcription
- GO:0009892 — acts upstream of or within — negative regulation of metabolic process
- GO:0005634 — is active in — nucleus
- GO:0005886 — located in — plasma membrane
- GO:0009584 — involved in — detection of visible light
- GO:0009314 — acts upstream of or within — response to radiation
- GO:0050793 — acts upstream of or within — regulation of developmental process
Functional Keywords
Literature and News
- Arabidopsis phytochromes C and E have different spectral characteristics from those of phytochromes A and B. DOI: 10.1016/s0014-5793(00)01301-6 ; PMID: 10734217
- The phytochrome gene family in tomato and the rapid differential evolution of this family in angiosperms. DOI: 10.1093/oxfordjournals.molbev.a026316 ; PMID: 10723737
- Functional interaction of cryptochrome 1 and phytochrome D. DOI: 10.1046/j.1365-313x.1999.t01-1-00599.x ; PMID: 10571889
- Characterization of the gene encoding the apoprotein of phytochrome B2 in tomato, and identification of molecular lesions in two mutant alleles. DOI: 10.1007/s004380051037 ; PMID: 10485280
- The system of phytochromes: photobiophysics and photobiochemistry in vivo. DOI: NA ; PMID: 10379648
- Phytochrome D acts in the shade-avoidance syndrome in Arabidopsis by controlling elongation growth and flowering time. DOI: 10.1104/pp.119.3.909 ; PMID: 10069829
- Phytochromes and photomorphogenesis in Arabidopsis. DOI: 10.1098/rstb.1998.0300 ; PMID: 9800208
- Phytochrome E influences internode elongation and flowering time in Arabidopsis. DOI: 10.1105/tpc.10.9.1479 ; PMID: 9724694
- Coordination of phytochrome levels in phyB mutants of Arabidopsis as revealed by apoprotein-specific monoclonal antibodies. DOI: 10.1093/genetics/149.2.523 ; PMID: 9611171
- Evidence that the phytochrome gene family in black cottonwood has one PHYA locus and two PHYB loci but lacks members of the PHYC/F and PHYE subfamilies. DOI: 10.1093/oxfordjournals.molbev.a025912 ; PMID: 9491613
- Differential patterns of expression of the Arabidopsis PHYB, PHYD, and PHYE phytochrome genes. DOI: 10.1104/pp.115.3.959 ; PMID: 9390432
- Computer analysis of phytochrome sequences and reevaluation of the phytochrome secondary structure by Fourier transform infrared spectroscopy. DOI: 10.1016/s0167-4838(97)00050-2 ; PMID: 9252112
- The phytochrome gene family in grasses (Poaceae): a phylogeny and evidence that grasses have a subset of the loci found in dicot angiosperms. DOI: 10.1093/oxfordjournals.molbev.a025677 ; PMID: 8865668
- The phytochrome gene family in tomato includes a novel subfamily. DOI: 10.1007/BF00020458 ; PMID: 8616214
- Impaired splicing of phytochrome B pre-mRNA in a novel phyB mutant of Arabidopsis. DOI: 10.1007/BF00020886 ; PMID: 7539307
- The phytochrome apoprotein family in Arabidopsis is encoded by five genes: the sequences and expression of PHYD and PHYE. DOI: 10.1007/BF00043870 ; PMID: 8049367
- Functional interaction of phytochrome B and cryptochrome 2. DOI: 10.1038/35041583 ; PMID: 11089975
- Circadian clock-regulated expression of phytochrome and cryptochrome genes in Arabidopsis. DOI: 10.1104/pp.010467 ; PMID: 11743105
- Molecular and phenotypic specificity of an antisense PHYB gene in Arabidopsis. DOI: 10.1023/a:1010686805488 ; PMID: 11437253
- shl, a New set of Arabidopsis mutants with exaggerated developmental responses to available red, far-red, and blue light. DOI: 10.1104/pp.127.1.295 ; PMID: 11553757
- Repression of light signaling by Arabidopsis SPA1 involves post-translational regulation of HFR1 protein accumulation. DOI: 10.1111/j.1365-313X.2005.02433.x ; PMID: 15960622
- phyA dominates in transduction of red-light signals to rapidly responding genes at the initiation of Arabidopsis seedling de-etiolation. DOI: 10.1111/j.1365-313X.2006.02914.x ; PMID: 17076805
- Phytochrome A is an irradiance-dependent red light sensor. DOI: 10.1111/j.1365-313X.2007.03036.x ; PMID: 17346261
- A new role for phytochromes in temperature-dependent germination. DOI: 10.1111/j.1469-8137.2007.02044.x ; PMID: 17504457
- Obligate heterodimerization of Arabidopsis phytochromes C and E and interaction with the PIF3 basic helix-loop-helix transcription factor. DOI: 10.1105/tpc.108.065227 ; PMID: 19286967
- Photoactivated phytochrome induces rapid PIF3 phosphorylation prior to proteasome-mediated degradation. DOI: 10.1016/j.molcel.2006.06.011 ; PMID: 16885032
- Phytochromes differentially regulate seed germination responses to light quality and temperature cues during seed maturation. DOI: 10.1111/j.1365-3040.2009.01998.x ; PMID: 19453482
- Arabidopsis PHYTOCHROME INTERACTING FACTOR proteins promote phytochrome B polyubiquitination by COP1 E3 ligase in the nucleus. DOI: 10.1105/tpc.109.072520 ; PMID: 20605855
- PFT1, the MED25 subunit of the plant Mediator complex, promotes flowering through CONSTANS dependent and independent mechanisms in Arabidopsis. DOI: 10.1111/j.1365-313X.2011.04815.x ; PMID: 21985558
- Phytochrome signaling mechanisms. DOI: 10.1199/tab.0148 ; PMID: 22303272
- Comparative functional analysis of full-length and N-terminal fragments of phytochrome C, D and E in red light-induced signaling. DOI: 10.1111/nph.12364 ; PMID: 23772959
- Functional diversity of phytochrome family in the control of light and gibberellin-mediated germination in Arabidopsis. DOI: 10.1111/pce.12286 ; PMID: 24471455
- FHY3 and FAR1 Act Downstream of Light Stable Phytochromes. DOI: 10.3389/fpls.2016.00175 ; PMID: 26941752
- Bottom-up Assembly of the Phytochrome Network. DOI: 10.1371/journal.pgen.1006413 ; PMID: 27820825
- Differential phosphorylation of the N-terminal extension regulates phytochrome B signaling. DOI: 10.1111/nph.16243 ; PMID: 31596952
- Differing biophysical properties underpin the unique signaling potentials within the plant phytochrome photoreceptor families. DOI: 10.1073/pnas.2105649118 ; PMID: 34039713
- Phytochrome-Dependent Regulation of ZFP6 and ZFPH Impacts Photomorphogenesis in Arabidopsis thaliana. DOI: 10.3389/fpls.2022.846262 ; PMID: 35720591
- Functional Mapping of Genes Modulating Plant Shade Avoidance Using Leaf Traits. DOI: 10.3390/plants12030608 ; PMID: 36771692
Gene Resources
Sequences
cDNA Sequence
- >AT4G18130.1
CAAAATATGTTGAAATTTTGAAGGTCTATTAAATTTGAGAAAGACATTAGCCATTTCTTCAATAGATTCAGAGTAACAAAAAAATACTTATTCCATGGAACTTTTTTATTCACAAAAATAAAGCAATTTAAGAAAAGGGAAAAAAAATGAAAGTGAATCGGTGGTGGTCACCGAACAAGCTGTACGTGTGGGAGAGAATGCAAACAGAGTAGCAAAAAAAAAGCATTGAAGGAAGCAAAACAAAACATGAAAAGAAGAATCTTGAGGTAAAAACGAATCCCAAATATCAAAAAGGAAACTTTTTTTACTTCTTTCTTTCTCTTGCTGCAAATGATACAGAATCAGCTTCTTCTTCTTCTTCTTCTGGTCGAAACTCACTCCACACTTTCCCCTAAGCTATGGGATTCGAGAGTTCAAGCTCAGCTGCAAGCAACATGAAACCTCAACCTCAAAAATCCAACACTGCTCAATACTCTGTTGATGCTGCTCTCTTTGCTGATTTCGCTCAATCCATTTACACCGGCAAGTCTTTTAACTACTCCAAATCTGTTATTTCACCTCCCAATCACGTTCCTGATGAACACATCACAGCTTACTTGTCTAACATCCAAAGAGGCGGTCTAGTTCAGCCCTTTGGTTGTTTGATTGCTGTCGAAGAACCTAGTTTTAGGATACTTGGTCTTAGTGACAACTCTTCTGACTTTCTTGGTTTGTTGTCTCTTCCTTCCACCTCCCATTCTGGTGAGTTTGATAAAGTCAAGGGTTTGATTGGAATCGATGCAAGGACGCTTTTTACTCCTTCCTCTGGAGCTTCTTTGTCTAAAGCTGCTTCCTTTACTGAGATTTCCTTGTTGAATCCTGTTTTGGTCCATTCTAGGACGACCCAGAAGCCTTTTTATGCTATTCTTCACAGGATTGATGCAGGGATTGTCATGGATTTGGAGCCTGCTAAATCAGGTGATCCGGCTTTGACCCTTGCAGGCGCAGTTCAGTCTCAGAAGCTAGCCGTTAGGGCCATTTCTAGGCTGCAGTCACTTCCCGGAGGAGATATTGGTGCCTTGTGTGATACTGTTGTGGAAGATGTTCAGAGACTTACCGGTTATGACCGTGTTATGGTCTATCAGTTTCATGAAGATGATCATGGTGAAGTTGTTTCTGAGATTAGAAGGTCTGATTTGGAGCCTTATTTGGGTTTACATTATCCGGCAACAGATATTCCTCAGGCTGCTCGGTTCTTGTTCAAACAGAACCGTGTCCGAATGATTTGTGACTGCAATGCAACTCCGGTTAAGGTTGTTCAGAGTGAGGAACTCAAGAGACCACTTTGTTTAGTTAATTCTACTCTAAGAGCTCCTCATGGCTGCCATACGCAGTATATGGCGAATATGGGCTCTGTAGCTTCTCTTGCACTCGCAATTGTAGTAAAAGGCAAAGATTCGAGCAAGCTTTGGGGATTAGTTGTTGGTCATCATTGTTCTCCTAGATACGTTCCATTCCCGTTGCGGTATGCTTGTGAGTTTCTGATGCAAGCATTTGGGCTTCAGCTTCAAATGGAACTTCAGTTAGCATCACAGTTAGCCGAGAAGAAGGCTATGCGGACGCAGACCTTGTTGTGCGATATGCTTCTCCGTGATACTGTTTCCGCTATTGTTACACAATCTCCGGGTATTATGGACCTTGTGAAATGTGATGGAGCTGCGTTATATTACAAGGGGAAATGTTGGTTGGTTGGTGTTACTCCTAATGAGTCACAAGTTAAAGACTTGGTGAATTGGCTGGTGGAGAATCACGGTGATGATTCGACGGGTTTAACCACTGATAGTTTGGTGGATGCGGGATACCCTGGTGCCATCTCACTTGGAGATGCCGTTTGTGGTGTGGCTGCCGCAGGATTTTCTTCAAAAGATTACTTACTTTGGTTCAGGTCCAATACTGCAAGTGCAATCAAATGGGGAGGAGCTAAACATCATCCAAAGGATAAAGATGATGCCGGAAGAATGCATCCGAGGTCATCGTTTACAGCCTTTCTTGAAGTTGCGAAGAGCAGGAGCTTGCCGTGGGAAATCTCAGAAATTGATGCTATCCATTCCCTGAGACTTATAATGAGAGAGTCATTTACCAGCTCTAGGCCAGTTTTGTCTGGTAATGGCGTAGCAAGAGATGCTAATGAGCTTACTTCTTTTGTGTGTGAAATGGTTAGGGTGATTGAAACCGCAACTGCACCTATTTTTGGGGTTGATTCATCCGGATGTATTAATGGTTGGAACAAGAAAACCGCTGAAATGACGGGATTACTAGCTAGTGAAGCAATGGGGAAGTCACTTGCCGATGAGATTGTTCAAGAGGAATCACGCGCAGCTCTTGAAAGTCTCTTGTGCAAAGCCCTACAAGGTGAAGAGGAGAAAAGTGTAATGCTGAAACTGAGAAAGTTTGGTCAAAACAATCATCCGGATTATTCTTCTGATGTGTGTGTTCTCGTTAACTCCTGCACGAGTCGGGATTATACTGAAAATATCATCGGTGTCTGCTTCGTTGGTCAAGACATCACTAGTGAGAAAGCAATAACAGATAGATTCATCAGATTGCAAGGAGATTACAAGACTATTGTTCAAAGCTTAAATCCTTTGATTCCACCGATATTTGCTTCAGATGAAAATGCTTGTTGTTCTGAGTGGAACGCAGCAATGGAAAAGCTTACGGGATGGTCAAAACACGAGGTGATTGGGAAAATGCTACCCGGTGAAGTCTTTGGAGTCTTTTGTAAAGTGAAATGCCAAGATTCGCTCACAAAGTTCTTGATCTCTCTGTACCAAGGAATTGCTGGTGATAATGTTCCCGAGAGTTCACTGGTTGAGTTCTTTAATAAGGAAGGGAAGTACATAGAAGCATCCTTAACCGCGAACAAGAGTACAAACATCGAAGGAAAAGTTATAAGATGTTTCTTCTTCTTGCAGATTATCAATAAGGAATCGGGGTTGAGCTGCCCAGAACTGAAAGAGAGCGCTCAAAGCCTCAACGAATTAACTTACGTAAGACAAGAAATCAAGAATCCTCTCAACGGTATCCGATTTGCACATAAGCTTCTTGAATCCTCAGAGATTTCAGCTAGCCAAAGGCAGTTTCTGGAGACTAGTGATGCTTGTGAGAAGCAAATCACGACAATAATCGAAAGCACGGACTTGAAAAGCATTGAGGAAGGCAAGTTGCAATTGGAAACAGAAGAGTTTCGACTTGAAAACATCTTGGACACAATCATTAGCCAAGTGATGATTATATTGAGAGAGAGGAACTCACAACTAAGGGTTGAAGTCGCCGAGGAGATCAAAACTCTGCCTCTCAATGGTGACAGAGTCAAGCTCCAGCTTATTCTTGCTGATCTTCTACGCAACATTGTGAATCATGCGCCGTTTCCAAATAGTTGGGTAGGTATCAGTATCTCACCAGGGCAGGAGCTTTCACGTGACAATGGTCGCTATATCCATCTACAGTTCAGGATGATACATCCGGGGAAAGGACTTCCTTCAGAGATGCTAAGTGATATGTTTGAGACTCGAGATGGATGGGTCACCCCTGATGGTTTAGGGCTTAAGCTTTCGCGGAAACTATTGGAGCAGATGAATGGCCGTGTGAGTTATGTCCGAGAAGACGAACGGTGTTTCTTTCAGGTGGATCTTCAAGTGAAGACAATGTTAGGTGTTGAGTCAAGAGGAACAGAGGGTAGTTCAAGCATAAAGTAGAAATTTTGAGTTACAAGGCTTATAAAATTTAATGAAATTTGGTCTCTTACCAAATGTATTAATTAGAACAAAGGTACATTATTTATTACCACCAATAAGATTGTATCTTAACTATCCTATGTATACAATTTGGAGAGATCATTTGGCCAACCAGACAAAAGTAAAACACAACCAT
CDS Sequence
Protein Sequence