Information report for AT4G17380
Gene Details
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Functional Descriptions
- PO:0006204 — sporocyte — esporocito (Spanish, exact), meiocyte (exact), spore mother cell (exact), 胞子母細胞 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- GO:0010777 — involved in — meiotic mismatch repair involved in reciprocal meiotic recombination
- GO:0006298 — involved in — mismatch repair
- GO:0007129 — acts upstream of or within — homologous chromosome pairing at meiosis
- GO:0043073 — located in — germ cell nucleus
- GO:0045143 — involved in — homologous chromosome segregation
- GO:0003690 — enables — double-stranded DNA binding
- GO:0005634 — is active in — nucleus
- GO:0000794 — located in — condensed nuclear chromosome
- GO:0007131 — involved in — reciprocal meiotic recombination
- GO:0030983 — enables — mismatched DNA binding
- GO:0005634 — located in — nucleus
- GO:0009506 — located in — plasmodesma
Literature and News
- Genes encoding calmodulin-binding proteins in the Arabidopsis genome. DOI: 10.1074/jbc.M111626200 ; PMID: 11782485
- Quantitative trait loci associated with adventitious shoot formation in tissue culture and the program of shoot development in Arabidopsis. DOI: 10.1534/genetics.103.025213 ; PMID: 15342526
- Replication protein A (AtRPA1a) is required for class I crossover formation but is dispensable for meiotic DNA break repair. DOI: 10.1038/emboj.2008.295 ; PMID: 19153602
- Retinoblastoma protein is essential for early meiotic events in Arabidopsis. DOI: 10.1038/emboj.2010.344 ; PMID: 21217641
- Arabidopsis thaliana FANCD2 Promotes Meiotic Crossover Formation. DOI: 10.1105/tpc.17.00745 ; PMID: 29352063
- Interactome Analysis and Docking Sites of MutS Homologs Reveal New Physiological Roles in Arabidopsis thaliana. DOI: 10.3390/molecules24132493 ; PMID: 31288414
- ATM controls meiotic DNA double-strand break formation and recombination and affects synaptonemal complex organization in plants. DOI: 10.1093/plcell/koab045 ; PMID: 33659989
- Comparative transcriptomic analysis of thermally stressed Arabidopsis thaliana meiotic recombination mutants. DOI: 10.1186/s12864-021-07497-2 ; PMID: 33711924
- The Arabidopsis Hop1 homolog ASY1 mediates cross-over assurance and interference. DOI: 10.1093/pnasnexus/pgac302 ; PMID: 36992817
Gene Resources
- UniProt: A0A1P8B358
- EMBL: CP002687
- AlphaFoldDB: A0A1P8B358
- EnsemblPlants: AT4G17380.2
- Gramene: AT4G17380.2
- ExpressionAtlas: AT4G17380
- InterPro: IPR000432, IPR007696, IPR007861
- PANTHER: PTHR11361, PTHR11361:SF21
- SUPFAM: SSF48334, SSF52540
- Gene3D: 1.10.1420.10, 3.30.420.110, 3.40.50.300
- SWISS-MODEL: A0A1P8B358
Sequences
cDNA Sequence
- >AT4G17380.1
ATTTTCGGAACTCGTGTACCTTTCACTCAATTTTCAAATTCTGATCTGTGGAGCGAAAATGGAAGACGACGGAGGAGAGAGATCGAGTTTCGTCGCCGGCCTAATTGAGAACAGAGCCAAAGAGGTTGGAATGGCTGCTTTTGACCTAAGATCGGCTTCACTGCATCTATCTCAGTATATAGAGACAAGCAGCTCATACCAAAACACGAAGACGCTGTTGCGTTTCTATGATCCTTCTGTGATAATTGTTCCTCCCAACAAATTGGCAGCCGATGGCATGGTTGGGGTATCGGAACTGGTGGATAGATGTTATAGCACCGTTAGGAAGGTTGTGTTTGCCCGTGGCTGTTTTGATGACACCAAGGGTGCTGTGCTAATACAAAACTTGGCAGCAGAAGAACCTTTGGCGCTTGGTTTAGACACTTACTATAAGCAGCATTATCTCTCATTGGCTGCTGCTGCTGCTACAATCAAATGGATAGAGGCGGAAAAGGGTGTGATAGTCACCAACCACTCACTGACTGTAACTTTTAATGGATCGTTTGATCACATGAATATCGATGCAACTAGTGTTGAGAATCTGGAACTCATTGATCCATTCCACAACGCACTTTTGGGCACTAGCAACAAAAAGAGGAGTTTGTTCCAGATGTTCAAGACAACAAAAACAGCTGGCGGGACTAGGCTTCTTCGCGCAAACTTGTTACAGCCTCTGAAAGATATTGAAACTATTAACACTCGCCTGGACTGCCTGGATGAGTTGATGAGCAATGAACAACTATTCTTTGGGCTTTCACAAGTTTTACGAAAATTTCCAAAAGAGACTGATCGAGTTCTTTGTCATTTCTGCTTCAAGCCAAAGAAAGTCACTGAAGCGGTCATAGGTTTTGAAAATACCAGAAAGAGCCAAAACATGATTTCAAGCATTATCTTACTTAAGACTGCATTGGATGCTTTACCTATACTTGCAAAGGTTCTGAAGGACGCAAAGTGTTTTCTTCTTGCCAATGTTTACAAGTCAGTGTGTGAAAATGATAGATATGCTTCCATCAGAAAAAAAATCGGGGAAGTTATTGATGATGATGTCCTCCATGCACGGGTTCCGTTTGTTGCCCGTACACAGCAGTGTTTTGCTTTAAAAGCCGGAATTGATGGATTTTTGGATATTGCAAGAAGAACCTTCTGTGATACTAGTGAAGCAATACATAATCTGGCCAGTAAGTATCGTGAGGAATTCAACTTGCCAAATTTGAAACTCCCTTTCAACAACAGGCAGGGATTCTTTTTCAGAATTCCTCAGAAGGAAGTTCAGGGAAAACTTCCGAACAAATTCACTCAGGTTGTAAAACATGGGAAAAACATACATTGTTCGAGTCTGGAACTGGCTTCTTTGAATGTCAGGAATAAGTCTGCCGCTGGAGAGTGTTTCATTCGAACGGAAACATGCTTGGAAGCACTAATGGATGCTATAAGGGAAGATATCTCTGCCCTCACACTCCTAGCAGAAGTCTTATGTCTCCTAGATATGATTGTTAATTCATTTGCTCATACAATATCCACAAAGCCAGTGGATCGATACTCTAGACCTGAACTAACAGATAGTGGCCCACTGGCAATTGATGCTGGAAGGCATCCCATCCTAGAAAGCATACACAACGACTTTGTTTCTAATAGTATATTCATGTCAGAAGCAACCAACATGTTGGTAGTTATGGGTCCAAACATGAGCGGAAAGAGCACATATCTCCAACAGGTGTGTCTAGTAGTCATTCTTGCTCAGATTGGTTGCTATGTCCCAGCTCGCTTTGCAACTATAAGGGTGGTTGACCGCATATTTACAAGAATGGGGACAATGGATAACCTTGAGTCGAATTCCAGCACGTTTATGACGGAGATGAGAGAGACCGCTTTCATAATGCAGAATGTCACCAATAGGAGTCTGATAGTCATGGATGAACTCGGGAGGGCTACTTCTTCCTCAGACGGGTTAGCAATGGCATGGAGCTGCTGCGAGTATCTCTTATCACTCAAAGCGTACACAGTATTTGCAACCCATATGGACAGTCTCGCAGAGTTAGCAACCATCTACCCAAATGTCAAGGTTCTTCATTTTTATGTAGACATCAGAGATAACCGCTTAGACTTCAAGTTTCAACTGCGAGATGGAACCCTACATGTTCCACATTATGGCCTTCTATTAGCTGAAGTGGCGGGTCTGCCTAGTACAGTGATCGATACAGCTAGGATCATAACCAAAAGGATCACAGACAAAGAAAATAAAAGAATAGAGCTAAATTGTGGGAAGCACCACGAAATACATCGGATCTACCGAGTTGCTCAAAGGTTGATATGCTTGAAATACTCTAGACAGACAGAAGACTCAATTCGTCAAGCACTCCAAAATCTGAATGAAAGCTTCACTGAAGAAAGACTCTAAATAGTTTATAACAGAGGACACTAGGATACATTCACGTTTTAATTGCAATGTCTATAAGGGTTCTACA - >AT4G17380.2
ATTTTCGGAACTCGTGTACCTTTCACTCAATTTTCAAATTCTGATCTGTGGAGCGAAAATGGAAGACGACGGAGGAGAGAGATCGAGTTTCGTCGCCGGCCTAATTGAGAACAGAGCCAAAGAGGTTGGAATGGCTGCTTTTGACCTAAGATCGGCTTCACTGCATCTATCTCAGTATATAGAGACAAGCAGCTCATACCAAAACACGAAGACGCTGTTGCGTTTCTATGATCCTTCTGTGATAATTGTTCCTCCCAACAAATTGGCAGCCGATGGCATGGTTGGGGTATCGGAACTGGTGGATAGATGTTATAGCACCGTTAGGAAGGTTGTGTTTGCCCGTGGCTGTTTTGATGACACCAAGGGTGCTGTGCTAATACAAAACTTGGCAGCAGAAGAACCTTTGGCGCTTGGTTTAGACACTTACTATAAGCAGCATTATCTCTCATTGGCTGCTGCTGCTGCTACAATCAAATGGATAGAGGCGGAAAAGGGTGTGATAGTCACCAACCACTCACTGACTGTAACTTTTAATGGATCGTTTGATCACATGAATATCGATGCAACTAGTGTTGAGAATCTGGAACTCATTGATCCATTCCACAACGCACTTTTGGGCACTAGCAACAAAAAGAGGAGTTTGTTCCAGATGTTCAAGACAACAAAAACAGCTGGCGGGACTAGGCTTCTTCGCGCAAACTTGTTACAGCCTCTGAAAGATATTGAAACTATTAACACTCGCCTGGACTGCCTGGATGAGTTGATGAGCAATGAACAACTATTCTTTGGGCTTTCACAAGTTTTACGAAAATTTCCAAAAGAGACTGATCGAGTTCTTTGTCATTTCTGCTTCAAGCCAAAGAAAGTCACTGAAGCGGTCATAGGTTTTGAAAATACCAGAAAGAGCCAAAACATGATTTCAAGCATTATCTTACTTAAGACTGCATTGGATGCTTTACCTATACTTGCAAAGGTTCTGAAGGACGCAAAGTGTTTTCTTCTTGCCAATGTTTACAAGTCAGTGTGTGAAAATGATAGATATGCTTCCATCAGAAAAAAAATCGGGGAAGTTATTGATGATGATGTCCTCCATGCACGGGTTCCGTTTGTTGCCCGTACACAGCAGTGTTTTGCTTTAAAAGCCGGAATTGATGGATTTTTGGATATTGCAAGAAGAACCTTCTGTGATACTAGTGAAGCAATACATAATCTGGCCAGTAAGTATCGTGAGGAATTCAACTTGCCAAATTTGAAACTCCCTTTCAACAACAGGCAGGGATTCTTTTTCAGAATTCCTCAGAAGGAAGTTCAGGGAAAACTTCCGAACAAATTCACTCAGGTTGTAAAACATGGGAAAAACATACATTGTTCGAGTCTGGAACTGGCTTCTTTGAATGTCAGGAATAAGTCTGCCGCTGGAGAGTGTTTCATTCGAACGGAAACATGCTTGGAAGCACTAATGGATGCTATAAGGGAAGATATCTCTGCCCTCACACTCCTAGCAGAAGTCTTATGTCTCCTAGATATGATTGTTAATTCATTTGCTCATACAATATCCACAAAGCCAGTGGATCGATACTCTAGACCTGAACTAACAGATAGTGGCCCACTGGCAATTGATGCTGGAAGGCATCCCATCCTAGAAAGCATACACAACGACTTTGTTTCTAATAGTATATTCATGTCAGAAGCAACCAACATGTTGGTAGTTATGGGTCCAAACATGAGCGGAAAGAGCACATATCTCCAACAGGTGTGTCTAGTAGTCATTCTTGCTCAGATTGGTTGCTATGTCCCAGCTCGCTTTGCAACTATAAGGGTGGTTGACCGCATATTTACAAGAATGGGGACAATGGATAACCTTGAGTCGAATTCCAGCACGTTTATGACGGAGATGAGAGAGACCGCTTTCATAATGCAGAATGTCACCAATAGGAGTCTGATAGTCATGGATGAACTCGGGAGGGCTACTTCTTCCTCAGACGGGTTAGCAATGGCATGGAGCTGCTGCGAGTATCTCTTATCACTCAAAGCGTACACAGTATTTGCAACCCATATGGACAGTCTCGCAGAGTTAGCAACCATCTACCCAAATGTCAAGGTTCTTCATTTTTATGTAGACATCAGAGATAACCGCTTAGACTTCAAGTTTCAACTGCGAGATGGAACCCTACATGTTCCACATTATGGCCTTCTATTAGCTGAAGTGGCGGGTCTGCCTAGTACAGTGATCGATACAGCTAGGATCATAACCAAAAGGATCACAGACAAAGAAAATAAAAGAATAGAGCTAAATTGTGGGAAGCACCACGAAATACATCGGATCTACCGAGTTGCTCAAAGGTTGATATGCTTGAAATACTCTAGACAGACAGAAGACTCAATTCGTCAAGCACTCCAAAATCTGAATGAAAGCTTCACTGAAGAAAGACTCTAAATAGTTTATAACAGAGGACACTAGGATACATTCACGTTTTAATTGCAATGTCTATAAGGGTTCTACA
CDS Sequence
Protein Sequence