Information report for AT4G17190
Gene Details
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Functional Descriptions
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009049 — inflorescence — inflorescencia (Spanish, exact), 花序 (Japanese, exact), Triticeae spike (narrow)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- GO:0005737 — located in — cytoplasm
- GO:0045337 — involved in — farnesyl diphosphate biosynthetic process
- GO:0004161 — enables — dimethylallyltranstransferase activity
- GO:0045337 — acts upstream of or within — farnesyl diphosphate biosynthetic process
- GO:0016765 — enables — transferase activity, transferring alkyl or aryl (other than methyl) groups
- GO:0033384 — involved in — geranyl diphosphate biosynthetic process
- GO:0008299 — involved in — isoprenoid biosynthetic process
- GO:0004337 — enables — geranyltranstransferase activity
- GO:0005737 — is active in — cytoplasm
Functional Keywords
- flower , inflorescence , pollen , root
Literature and News
- Expression profile analysis of the low-oxygen response in Arabidopsis root cultures. DOI: 10.1105/tpc.004747 ; PMID: 12368499
- Genome organization in Arabidopsis thaliana: a survey for genes involved in isoprenoid and chlorophyll metabolism. DOI: 10.1023/a:1023005504702 ; PMID: 12777052
- Monitoring genome-wide changes in gene expression in response to endogenous cytokinin reveals targets in Arabidopsis thaliana. DOI: 10.1016/s0014-5793(03)01194-3 ; PMID: 14623097
- Microarray expression analyses of Arabidopsis guard cells and isolation of a recessive abscisic acid hypersensitive protein phosphatase 2C mutant. DOI: 10.1105/tpc.019000 ; PMID: 14973164
- Intron retention is a major phenomenon in alternative splicing in Arabidopsis. DOI: 10.1111/j.1365-313X.2004.02172.x ; PMID: 15341630
- Comparative transcriptome analysis of Arabidopsis thaliana infested by diamond back moth (Plutella xylostella) larvae reveals signatures of stress response, secondary metabolism, and signalling. DOI: 10.1186/1471-2164-9-154 ; PMID: 18400103
- In silico comparison of transcript abundances during Arabidopsis thaliana and Glycine max resistance to Fusarium virguliforme. DOI: 10.1186/1471-2164-9-S2-S6 ; PMID: 18831797
- Fibrillin 5 Is Essential for Plastoquinone-9 Biosynthesis by Binding to Solanesyl Diphosphate Synthases in Arabidopsis. DOI: 10.1105/tpc.15.00707 ; PMID: 26432861
- Analysis of protein complexes in Arabidopsis leaves using size exclusion chromatography and label-free protein correlation profiling. DOI: 10.1016/j.jprot.2017.06.004 ; PMID: 28627464
Gene Resources
- UniProt: F4JNF1
- EMBL: CP002687
- AlphaFoldDB: F4JNF1
- EnsemblPlants: AT4G17190.2
- Gramene: AT4G17190.2
- ExpressionAtlas: AT4G17190
- InterPro: IPR000092, IPR008949, IPR033749
- PANTHER: PTHR11525, PTHR11525:SF0
- SUPFAM: SSF48576
- PROSITE: PS00444
- Gene3D: 1.10.600.10
- SWISS-MODEL: F4JNF1
- Conserved Domain Database: cd00685
Sequences
cDNA Sequence
- >AT4G17190.2
CCTTCCTCGACGTTTACTCTGTTCTCAAGTCTGATCTGCTTCAAGATCCTTCCTTTGAATTCACCCACGAATCTCGTCAATGGCTTGAACGGATGCTTGACTACAATGTACGCGGAGGTGAGAGAAGCTTCACTCAGACATTACCTTCAAACTTAAGCAGCTCATAAACAAAACTTGTGTGTGTTCTGTTTTGCAGGGAAGCTAAATCGTGGTCTCTCTGTGGTTGATAGCTACAAGCTGTTGAAGCAAGGTCAAGACTTGACGGAGAAAGAGACTTTCCTCTCATGTGCTCTTGGTTGGTGCATTGAATGGCTTCAAGCTTATTTCCTTGTGCTTGATGACATCATGGACAACTCTGTCACACGCCGTGGCCAGCCTTGTTGGTTTAGAAAGCCAAAGGTTGGTATGATTGCCATTAACGATGGGATTCTACTTCGCAATCATATCCACAGGATTCTCAAAAAGCACTTCAGGGAAATGCCTTACTATGTTGACCTCGTTGATTTGTTTAACGAGGTAGAGTTTCAAACAGCTTGCGGCCAGATGATTGATTTGATCACCACCTTTGATGGAGAAAAAGATTTGTCTAAGTACTCCTTGCAAATCCATCGGCGTATTGTTGAGTACAAAACAGCTTATTACTCATTTTATCTTCCTGTTGCTTGCGCATTGCTCATGGCGGGAGAAAATTTGGAAAACCATACTGATGTGAAGACTGTTCTTGTTGACATGGGAATTTACTTTCAAGTACAGGATGATTATCTGGACTGTTTTGCTGATCCTGAGACACTTGGCAAGATAGGGACAGACATAGAAGATTTCAAATGCTCCTGGTTGGTAGTTAAGGCATTGGAACGCTGCAGTGAAGAACAAACTAAGATACTATACGAGAACTATGGTAAAGCCGAACCATCAAACGTTGCTAAGGTGAAAGCTCTCTACAAAGAGCTTGATCTCGAGGGAGCGTTCATGGAATATGAGAAGGAAAGCTATGAGAAGCTGACAAAGTTGATCGAAGCTCACCAGAGTAAAGCAATTCAAGCAGTGCTAAAATCTTTCTTGGCTAAGATCTACAAGAGGCAGAAGTAGAGACATACTCGGGCCTCTCTCCGTTTTATTCTTCTGACATTTATGTATTGGTGCATGACTTCTTTTGCCTTAGATCTTATGTTCCCTTCCGAAAATAGAATTTGAGATTCTTGTTCATGCTTATAGTATAGAGACTTAGAAAATGTCTATGTTTCTTTTAATTTCTGAATAAAAAATGTGCAATCAGTGATAAATTGATACTTGTTAATGTGGCAA - >AT4G17190.1
CCTTCCTCGACGTTTACTCTGTTCTCAAGTCTGATCTGCTTCAAGATCCTTCCTTTGAATTCACCCACGAATCTCGTCAATGGCTTGAACGGATGCTTGACTACAATGTACGCGGAGGTGAGAGAAGCTTCACTCAGACATTACCTTCAAACTTAAGCAGCTCATAAACAAAACTTGTGTGTGTTCTGTTTTGCAGGGAAGCTAAATCGTGGTCTCTCTGTGGTTGATAGCTACAAGCTGTTGAAGCAAGGTCAAGACTTGACGGAGAAAGAGACTTTCCTCTCATGTGCTCTTGGTTGGTGCATTGAATGGCTTCAAGCTTATTTCCTTGTGCTTGATGACATCATGGACAACTCTGTCACACGCCGTGGCCAGCCTTGTTGGTTTAGAAAGCCAAAGGTTGGTATGATTGCCATTAACGATGGGATTCTACTTCGCAATCATATCCACAGGATTCTCAAAAAGCACTTCAGGGAAATGCCTTACTATGTTGACCTCGTTGATTTGTTTAACGAGGTAGAGTTTCAAACAGCTTGCGGCCAGATGATTGATTTGATCACCACCTTTGATGGAGAAAAAGATTTGTCTAAGTACTCCTTGCAAATCCATCGGCGTATTGTTGAGTACAAAACAGCTTATTACTCATTTTATCTTCCTGTTGCTTGCGCATTGCTCATGGCGGGAGAAAATTTGGAAAACCATACTGATGTGAAGACTGTTCTTGTTGACATGGGAATTTACTTTCAAGTACAGGATGATTATCTGGACTGTTTTGCTGATCCTGAGACACTTGGCAAGATAGGGACAGACATAGAAGATTTCAAATGCTCCTGGTTGGTAGTTAAGGCATTGGAACGCTGCAGTGAAGAACAAACTAAGATACTATACGAGAACTATGGTAAAGCCGAACCATCAAACGTTGCTAAGGTGAAAGCTCTCTACAAAGAGCTTGATCTCGAGGGAGCGTTCATGGAATATGAGAAGGAAAGCTATGAGAAGCTGACAAAGTTGATCGAAGCTCACCAGAGTAAAGCAATTCAAGCAGTGCTAAAATCTTTCTTGGCTAAGATCTACAAGAGGCAGAAGTAGAGACATACTCGGGCCTCTCTCCGTTTTATTCTTCTGACATTTATGTATTGGTGCATGACTTCTTTTGCCTTAGATCTTATGTTCCCTTCCGAAAATAGAATTTGAGATTCTTGTTCATGCTTATAGTATAGAGACTTAGAAAATGTCTATGTTTCTTTTAATTTCTGAATAAAAAATGTGCAATCAGTGATAAATTGATACTTGTTAATGTGGCAA - >AT4G17190.3
CCTTCCTCGACGTTTACTCTGTTCTCAAGTCTGATCTGCTTCAAGATCCTTCCTTTGAATTCACCCACGAATCTCGTCAATGGCTTGAACGGATGCTTGACTACAATGTACGCGGAGGTGAGAGAAGCTTCACTCAGACATTACCTTCAAACTTAAGCAGCTCATAAACAAAACTTGTGTGTGTTCTGTTTTGCAGGGAAGCTAAATCGTGGTCTCTCTGTGGTTGATAGCTACAAGCTGTTGAAGCAAGGTCAAGACTTGACGGAGAAAGAGACTTTCCTCTCATGTGCTCTTGGTTGGTGCATTGAATGGCTTCAAGCTTATTTCCTTGTGCTTGATGACATCATGGACAACTCTGTCACACGCCGTGGCCAGCCTTGTTGGTTTAGAAAGCCAAAGGTTGGTATGATTGCCATTAACGATGGGATTCTACTTCGCAATCATATCCACAGGATTCTCAAAAAGCACTTCAGGGAAATGCCTTACTATGTTGACCTCGTTGATTTGTTTAACGAGGTAGAGTTTCAAACAGCTTGCGGCCAGATGATTGATTTGATCACCACCTTTGATGGAGAAAAAGATTTGTCTAAGTACTCCTTGCAAATCCATCGGCGTATTGTTGAGTACAAAACAGCTTATTACTCATTTTATCTTCCTGTTGCTTGCGCATTGCTCATGGCGGGAGAAAATTTGGAAAACCATACTGATGTGAAGACTGTTCTTGTTGACATGGGAATTTACTTTCAAGTACAGGATGATTATCTGGACTGTTTTGCTGATCCTGAGACACTTGGCAAGATAGGGACAGACATAGAAGATTTCAAATGCTCCTGGTTGGTAGTTAAGGCATTGGAACGCTGCAGTGAAGAACAAACTAAGATACTATACGAGAACTATGGTAAAGCCGAACCATCAAACGTTGCTAAGGTGAAAGCTCTCTACAAAGAGCTTGATCTCGAGGGAGCGTTCATGGAATATGAGAAGGAAAGCTATGAGAAGCTGACAAAGTTGATCGAAGCTCACCAGAGTAAAGCAATTCAAGCAGTGCTAAAATCTTTCTTGGCTAAGATCTACAAGAGGCAGAAGTAGAGACATACTCGGGCCTCTCTCCGTTTTATTCTTCTGACATTTATGTATTGGTGCATGACTTCTTTTGCCTTAGATCTTATGTTCCCTTCCGAAAATAGAATTTGAGATTCTTGTTCATGCTTATAGTATAGAGACTTAGAAAATGTCTATGTTTCTTTTAATTTCTGAATAAAAAATGTGCAATCAGTGATAAATTGATACTTGTTAATGTGGCAA
CDS Sequence
Protein Sequence