Information report for AT4G17040
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- GO:0009941 — located in — chloroplast envelope
- GO:0009570 — located in — chloroplast stroma
- GO:0009368 — part of — endopeptidase Clp complex
- GO:0004176 — enables — ATP-dependent peptidase activity
- GO:0004252 — enables — serine-type endopeptidase activity
- GO:0009532 — located in — plastid stroma
- GO:0009507 — located in — chloroplast
- GO:0000302 — acts upstream of or within — response to reactive oxygen species
- GO:0006515 — involved in — protein quality control for misfolded or incompletely synthesized proteins
- GO:0005829 — located in — cytosol
- GO:0010468 — acts upstream of or within — regulation of gene expression
- GO:0051117 — enables — ATPase binding
- GO:0009536 — located in — plastid
Functional Keywords
Literature and News
- Identification of a 350-kDa ClpP protease complex with 10 different Clp isoforms in chloroplasts of Arabidopsis thaliana. DOI: 10.1074/jbc.M010503200 ; PMID: 11278690
- The gene complement for proteolysis in the cyanobacterium Synechocystis sp. PCC 6803 and Arabidopsis thaliana chloroplasts. DOI: 10.1007/s00294-002-0309-8 ; PMID: 12185496
- Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. DOI: 10.1074/jbc.M308435200 ; PMID: 14576160
- Clp protease complexes from photosynthetic and non-photosynthetic plastids and mitochondria of plants, their predicted three-dimensional structures, and functional implications. DOI: 10.1074/jbc.M309212200 ; PMID: 14593120
- Downregulation of ClpR2 leads to reduced accumulation of the ClpPRS protease complex and defects in chloroplast biogenesis in Arabidopsis. DOI: 10.1105/tpc.106.042861 ; PMID: 16766689
- Cross genome comparisons of serine proteases in Arabidopsis and rice. DOI: 10.1186/1471-2164-7-200 ; PMID: 16895613
- Structural and functional insights into the chloroplast ATP-dependent Clp protease in Arabidopsis. DOI: 10.1105/tpc.106.044594 ; PMID: 16980539
- Protease gene families in Populus and Arabidopsis. DOI: 10.1186/1471-2229-6-30 ; PMID: 17181860
- Genome-wide interacting effects of sucrose and herbicide-mediated stress in Arabidopsis thaliana: novel insights into atrazine toxicity and sucrose-induced tolerance. DOI: 10.1186/1471-2164-8-450 ; PMID: 18053238
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Subunits of the plastid ClpPR protease complex have differential contributions to embryogenesis, plastid biogenesis, and plant development in Arabidopsis. DOI: 10.1105/tpc.108.063784 ; PMID: 19525416
- Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis. DOI: 10.1104/pp.110.168120 ; PMID: 21139083
- Subunit stoichiometry, evolution, and functional implications of an asymmetric plant plastid ClpP/R protease complex in Arabidopsis. DOI: 10.1105/tpc.111.086454 ; PMID: 21712416
- Modified Clp protease complex in the ClpP3 null mutant and consequences for chloroplast development and function in Arabidopsis. DOI: 10.1104/pp.113.215699 ; PMID: 23548781
- Proteomic evidence for genetic epistasis: ClpR4 mutations switch leaf variegation to virescence in Arabidopsis. DOI: 10.1111/tpj.12344 ; PMID: 24124904
- 2-Hydroxymelatonin, Rather Than Melatonin, Is Responsible for RBOH-Dependent Reactive Oxygen Species Production Leading to Premature Senescence in Plants. DOI: 10.3390/antiox10111728 ; PMID: 34829600
- Chloroplast and mitochondrial proteases in Arabidopsis. A proposed nomenclature. DOI: 10.1104/pp.125.4.1912 ; PMID: 11299370
- Identification of a 350-kDa ClpP protease complex with 10 different Clp isoforms in chloroplasts of Arabidopsis thaliana. DOI: 10.1074/jbc.M010503200 ; PMID: 11278690
- Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis. DOI: 10.1021/pr034025j ; PMID: 12938931
- Clp protease complexes from photosynthetic and non-photosynthetic plastids and mitochondria of plants, their predicted three-dimensional structures, and functional implications. DOI: 10.1074/jbc.M309212200 ; PMID: 14593120
- Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. DOI: 10.1371/journal.pone.0001994 ; PMID: 18431481
- Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis. DOI: 10.1104/pp.108.124545 ; PMID: 18633119
- The oligomeric stromal proteome of Arabidopsis thaliana chloroplasts. DOI: 10.1074/mcp.M500180-MCP200 ; PMID: 16207701
- Analysis of protein complexes in Arabidopsis leaves using size exclusion chromatography and label-free protein correlation profiling. DOI: 10.1016/j.jprot.2017.06.004 ; PMID: 28627464
Gene Resources
- UniProt: A0A178V785
- EMBL: CACRSJ010000109, CACSHJ010000095, LR881469
- AlphaFoldDB: A0A178V785
- EnsemblPlants: AT4G17040.1
- Gramene: AT4G17040.1
- KEGG: ath:AT4G17040
- Orthologous matrix: ICDTINY
- ExpressionAtlas: AT4G17040
- InterPro: IPR001907, IPR023562, IPR029045
- PANTHER: PTHR10381, PTHR10381:SF47
- SUPFAM: SSF52096
- Gene3D: 3.90.226.10
- OrthoDB: A0A178V785
- SWISS-MODEL: A0A178V785
- Conserved Domain Database: cd07017
Sequences
cDNA Sequence
- >AT4G17040.1
GCCCGATTTGAGACAGATCGTTATCGTTTCGGGGTCACAGGGACTTTCACTCTTTCTCTCTCTCTGCAACAAAGAAGAAATGGAGGTAGCAGCAGCGACTGCGACGAGCTTCACAACGCTTCGAGCTCGTACGTCAGCGATTATCCCGTCTTCTACACGTAATCTGAGATCTAAACCGAGATTTTCTTCATCTTCATCTCTCAGAGCTTCTCTTTCGAATGGCTTTCTTTCGCCGTATACCGGAGGAAGCATCTCTAGTGACTTATGCGGCGCTAAGCTTCGTGCGGAATCGCTTAATCCGTTAAATTTTTCCAGTTCCAAGCCTAAACGCGGAGTTGTCACTATGGTTATACCTTTCTCAAAGGGAAGTGCACACGAACAACCTCCTCCTGATTTGGCATCATATTTGTTCAAGAACCGAATTGTATATTTGGGAATGTCTCTCGTACCTTCAGTTACTGAGTTGATACTTGCGGAGTTTCTTTACCTTCAGTATGAAGACGAGGAAAAGCCTATTTACCTTTACATAAACTCGACTGGGACAACCAAGAATGGTGAAAAGTTGGGCTATGATACTGAGGCTTTTGCAATCTATGATGTCATGGGGTATGTCAAACCACCAATCTTTACTCTTTGCGTCGGGAATGCTTGGGGTGAAGCTGCTTTGCTTCTGACTGCTGGTGCAAAAGGAAATCGATCTGCGTTGCCCTCATCAACTATTATGATAAAGCAGCCCATTGCTCGATTTCAAGGCCAAGCAACTGATGTTGAAATTGCAAGGAAAGAAATCAAGCACATAAAGACAGAAATGGTCAAGCTGTATTCAAAGCATATTGGTAAATCCCCGGAGCAGATTGAAGCTGACATGAAACGCCCGAAATATTTTAGTCCCACTGAGGCTGTTGAATATGGGATCATTGATAAGGTGGTTTACAATGAAAGGGGCAGCCAAGACAGAGGAGTTGTGTCTGACCTTAAAAAGGCACAACTCATTTGAATGTCAGAACTGTCTTCCGAAATCCCATGATTAACAGGTTGGAGATCTTACCGCTGATCAAATGGGGAATCAGTGAACCATTCACCGGCACAGAACTGAGGTAAAGTCTGGAAAACATGTTAAAAAAGGTTACTAGTAATGCTGCAATTGTAGGGTTATTTGAACAGAAACAAACCCATATGTGTAGGCTTGTGAATGCCTAGAAACAGGATTGGTGTATCTTCAATATATGTTTCTAAGATGAATCAATTTCATATGCTGCTGTGTGTGTGTGTTACAAACCAATATGTTTGTGTTCACATGAAGCAAGAACGTGGTACCGTTTATGGAATTAGATGGAGAATCAATGAGCGATGACATAACGATAAATTGCACCAACCCCATTATCCTGTGATATTCCTTTTTCCTATGAAAAGTCCACACTTGTCATTAAACACGCAATGTTTTGTTGGACTCTACATGTCAACTGTTATAGTGACGTCATCGGTTCCTTACGTGCCGGCGAATACGAGTTCTTCCACTGGAGTAAGAACTAGCCAACCATGATTTAGAGTTAGGGTGTGCATTTATATCATAGCGAAACGTTGACAAGAAAATATGTTCTCTGCATTTCAAACTTAGGCTGATCTAAACCAAGGGTATACAATTTCTGTAACCCGACACCCAAAATATTGAATCAAATACTG
CDS Sequence
Protein Sequence