Information report for AT4G16845
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0025195 — pollen tube cell — célula del tubo polínico (Spanish, exact), 花粉管細胞 (Japanese, exact)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- GO:0010048 — acts upstream of or within — vernalization response
- GO:0006349 — acts upstream of or within — regulation of gene expression by genomic imprinting
- GO:0031490 — enables — chromatin DNA binding
- GO:0005634 — located in — nucleus
- GO:0009409 — acts upstream of or within — response to cold
- GO:0005515 — enables — protein binding
- GO:0003700 — enables — DNA-binding transcription factor activity
- GO:0001222 — enables — transcription corepressor binding
- GO:0005634 — is active in — nucleus
- GO:0005677 — part of — chromatin silencing complex
Functional Keywords
Literature and News
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- Su(z)12, a novel Drosophila Polycomb group gene that is conserved in vertebrates and plants. DOI: 10.1242/dev.128.17.3371 ; PMID: 11546753
- Positional cloning of the wheat vernalization gene VRN1. DOI: 10.1073/pnas.0937399100 ; PMID: 12730378
- LHP1, the Arabidopsis homologue of HETEROCHROMATIN PROTEIN1, is required for epigenetic silencing of FLC. DOI: 10.1073/pnas.0507427103 ; PMID: 16549797
- Polycomb group complexes self-regulate imprinting of the Polycomb group gene MEDEA in Arabidopsis. DOI: 10.1016/j.cub.2006.01.020 ; PMID: 16527743
- Quantitative effects of vernalization on FLC and SOC1 expression. DOI: 10.1111/j.1365-313X.2006.02652.x ; PMID: 16507079
- Polycomb-group proteins repress the floral activator AGL19 in the FLC-independent vernalization pathway. DOI: 10.1101/gad.377206 ; PMID: 16778081
- The Arabidopsis thaliana vernalization response requires a polycomb-like protein complex that also includes VERNALIZATION INSENSITIVE 3. DOI: 10.1073/pnas.0606385103 ; PMID: 16983073
- The PHD finger protein VRN5 functions in the epigenetic silencing of Arabidopsis FLC. DOI: 10.1016/j.cub.2006.11.052 ; PMID: 17174094
- Epigenetic regulation of flowering. DOI: 10.1016/j.pbi.2007.06.009 ; PMID: 17709278
- Vernalization-induced trimethylation of histone H3 lysine 27 at FLC is not maintained in mitotically quiescent cells. DOI: 10.1016/j.cub.2007.10.026 ; PMID: 17980595
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis. DOI: 10.1104/pp.108.126375 ; PMID: 18775970
- The molecular biology of seasonal flowering-responses in Arabidopsis and the cereals. DOI: 10.1093/aob/mcp063 ; PMID: 19304997
- Integration of seasonal flowering time responses in temperate cereals. DOI: 10.4161/psb.3.8.6352 ; PMID: 19704811
- Molecular evolution of VEF-domain-containing PcG genes in plants. DOI: 10.1093/mp/ssp032 ; PMID: 19825653
- Heterologous expression of wheat VERNALIZATION 2 (TaVRN2) gene in Arabidopsis delays flowering and enhances freezing tolerance. DOI: 10.1371/journal.pone.0008690 ; PMID: 20084169
- Dosage-sensitive function of retinoblastoma related and convergent epigenetic control are required during the Arabidopsis life cycle. DOI: 10.1371/journal.pgen.1000988 ; PMID: 20585548
- Vernalization-mediated epigenetic silencing by a long intronic noncoding RNA. DOI: 10.1126/science.1197349 ; PMID: 21127216
- Wheat TILLING mutants show that the vernalization gene VRN1 down-regulates the flowering repressor VRN2 in leaves but is not essential for flowering. DOI: 10.1371/journal.pgen.1003134 ; PMID: 23271982
- Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. DOI: 10.1186/1471-2229-13-229 ; PMID: 24377444
- The Arabidopsis GAGA-Binding Factor BASIC PENTACYSTEINE6 Recruits the POLYCOMB-REPRESSIVE COMPLEX1 Component LIKE HETEROCHROMATIN PROTEIN1 to GAGA DNA Motifs. DOI: 10.1104/pp.15.00409 ; PMID: 26025051
- MtVRN2 is a Polycomb VRN2-like gene which represses the transition to flowering in the model legume Medicago truncatula. DOI: 10.1111/tpj.13156 ; PMID: 26947149
- Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation. DOI: 10.1105/tpc.15.00744 ; PMID: 27650334
- Modular function of long noncoding RNA, COLDAIR, in the vernalization response. DOI: 10.1371/journal.pgen.1006939 ; PMID: 28759577
- Cis and trans determinants of epigenetic silencing by Polycomb repressive complex 2 in Arabidopsis. DOI: 10.1038/ng.3937 ; PMID: 28825728
- The molecular mechanism of vernalization in Arabidopsis and cereals: role of Flowering Locus C and its homologs. DOI: 10.1111/ppl.13163 ; PMID: 32623749
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
Gene Resources
- UniProt: F4JMM5
- EMBL: CP002687
- AlphaFoldDB: F4JMM5
- EnsemblPlants: AT4G16845.2
- Gramene: AT4G16845.2
Sequences
cDNA Sequence
- >AT4G16845.2
ATTTTGCTTGCTCTCTCTCTTACACGGCCAATCGGTGTTTTCGCAGCTTTCAGGCCTCAATACAAGACATTCTATATAAGCATATTGCAGAAGAGGCGGTTCTAATTGTTGCATGGAGTTGAACAATATGACGTAGGGAAATTCTAATTTAGGGGAGGCCTCAGAGTTTGCACTAACTTCATAATCAGCTCTGGACGTTGTTGATTGTATTTGAACAAGAATGTGTAGGCAGAATTGTCGCGCGAAATCCTCACCGGAGGAAGTGATTTCAACTGATGAGAATCTCTTGATATATTGTAAACCTGTTCGACTATATAACATCTTTCACCTTCGCTCTCTAGGCAACGTATGATTTGGCCTTCCTCTCTCATCATTTTAGCTTAGTAATCTTTCATCTCCTGTGTAGATCACCCACTAATAGTTTGAGTTTGCTAAGCTGATTATGGTCTGACTCATGGCGAGTGTGTGCTTCTTTTGTCTCCTAATGTTATTTGAACTTGTTGTTTGTTGTTGCAGCCATCGTTTCTGCCAAGATGCTTGAACTACAAAATTGGGGCAAAGCGCAAAAGAAAGTCAAGATCTACTGGGATGGTAGTTTTCAACTATAAGGATTGTAATAATACATTACAAAGAACTGAAGGGAGGATTGTTCTTGTCCATTTTGCTCTATGCTATGTGGTAGCTTCAAGGTGGGCAACTATTACAACTGAGGGGCTGCAATTTCATTTGAATTCATCTCATGATTTATTTGAATTTGAGTTCAAGCTTTTGGAAGAATACCAGACAGTTAATGTTTCTGTAAAACTTAATTCCTTCATATTTGAGGAAGAAGGAAGTGATGATGATAAATTTGAGCCCTTCTCTCTCTGCTCGAAACCTCGTAAGCGTAGACAAAGAGGTGGCAGAAATAACACCAGGAGACTTAAAGTATGCTTTTTACCGTTGGATTCACCCAGTTTAGCTAATGGCACAGAAAATGGAATTGCCCTGCTGAATGATGGAAACCGTGGTTTAGGATATCCCGAGGCAACAGAGCTTGCTGGACAATTTGAGATGACTAGCAACATTCCACCAGCCATAGCCCACTCTTCTCTGGACGCTGGTGCTAAAGTTATATTAACAACCGAAGCTGTGGTCCCTGCTACTAAGACAAGAAAGTTATCTGCTGAGCGATCAGAGGCTAGAAGCCACCTACTTCTTCAGAAACGCCAATTCTATCATTCTCACAGAGTCCAGCCAATGGCGCTTGAGCAAGTAATGTCTGATCGGGATAGCGAGGATGAAGTCGATGACGATGTTGCAGATTTTGAAGATCGCCAGATGCTTGATGACTTTGTGGATGTGAATAAAGATGAAAAGCAATTCATGCATCTTTGGAACTCGTTTGTAAGAAAACAAAGGGTTATAGCAGATGGTCATATCTCTTGGGCATGTGAAGTATTTTCAAGATTTTACGAGAAAGAGTTGCACTGTTACTCATCACTCTTCTGGTGTTGGAGATTGTTTTTGATTAAACTATGGAACCATGGACTTGTCGACTCAGCCACCATCAACAACTGCAATACCATCCTCGAGAATTGCCGTAATACCTCAGTCACTAACAACAACAACAACAGTGTGGATCATCCCAGTGACTCAAACACCAACAACAATAACATTGTGGATCATCCGAATGACATAAAAAACAAGAACAATGTTGACAACAAGGACAATAACAGCAGAGACAAGTAATTAAATAGGAAACACTCCGGTTTAGATGATACCGATCTATCGGATTGTAACTTATTCTTCTTTCTTAAAAAAATTGTTTAGGAGCAAACAAAGATTTTATTTGTTAGTGTATTCAACTGATTACATTTTTAGTTAAAAAAATGGATTCTCCTT - >AT4G16845.1
ATTTTGCTTGCTCTCTCTCTTACACGGCCAATCGGTGTTTTCGCAGCTTTCAGGCCTCAATACAAGACATTCTATATAAGCATATTGCAGAAGAGGCGGTTCTAATTGTTGCATGGAGTTGAACAATATGACGTAGGGAAATTCTAATTTAGGGGAGGCCTCAGAGTTTGCACTAACTTCATAATCAGCTCTGGACGTTGTTGATTGTATTTGAACAAGAATGTGTAGGCAGAATTGTCGCGCGAAATCCTCACCGGAGGAAGTGATTTCAACTGATGAGAATCTCTTGATATATTGTAAACCTGTTCGACTATATAACATCTTTCACCTTCGCTCTCTAGGCAACGTATGATTTGGCCTTCCTCTCTCATCATTTTAGCTTAGTAATCTTTCATCTCCTGTGTAGATCACCCACTAATAGTTTGAGTTTGCTAAGCTGATTATGGTCTGACTCATGGCGAGTGTGTGCTTCTTTTGTCTCCTAATGTTATTTGAACTTGTTGTTTGTTGTTGCAGCCATCGTTTCTGCCAAGATGCTTGAACTACAAAATTGGGGCAAAGCGCAAAAGAAAGTCAAGATCTACTGGGATGGTAGTTTTCAACTATAAGGATTGTAATAATACATTACAAAGAACTGAAGGGAGGATTGTTCTTGTCCATTTTGCTCTATGCTATGTGGTAGCTTCAAGGTGGGCAACTATTACAACTGAGGGGCTGCAATTTCATTTGAATTCATCTCATGATTTATTTGAATTTGAGTTCAAGCTTTTGGAAGAATACCAGACAGTTAATGTTTCTGTAAAACTTAATTCCTTCATATTTGAGGAAGAAGGAAGTGATGATGATAAATTTGAGCCCTTCTCTCTCTGCTCGAAACCTCGTAAGCGTAGACAAAGAGGTGGCAGAAATAACACCAGGAGACTTAAAGTATGCTTTTTACCGTTGGATTCACCCAGTTTAGCTAATGGCACAGAAAATGGAATTGCCCTGCTGAATGATGGAAACCGTGGTTTAGGATATCCCGAGGCAACAGAGCTTGCTGGACAATTTGAGATGACTAGCAACATTCCACCAGCCATAGCCCACTCTTCTCTGGACGCTGGTGCTAAAGTTATATTAACAACCGAAGCTGTGGTCCCTGCTACTAAGACAAGAAAGTTATCTGCTGAGCGATCAGAGGCTAGAAGCCACCTACTTCTTCAGAAACGCCAATTCTATCATTCTCACAGAGTCCAGCCAATGGCGCTTGAGCAAGTAATGTCTGATCGGGATAGCGAGGATGAAGTCGATGACGATGTTGCAGATTTTGAAGATCGCCAGATGCTTGATGACTTTGTGGATGTGAATAAAGATGAAAAGCAATTCATGCATCTTTGGAACTCGTTTGTAAGAAAACAAAGGGTTATAGCAGATGGTCATATCTCTTGGGCATGTGAAGTATTTTCAAGATTTTACGAGAAAGAGTTGCACTGTTACTCATCACTCTTCTGGTGTTGGAGATTGTTTTTGATTAAACTATGGAACCATGGACTTGTCGACTCAGCCACCATCAACAACTGCAATACCATCCTCGAGAATTGCCGTAATACCTCAGTCACTAACAACAACAACAACAGTGTGGATCATCCCAGTGACTCAAACACCAACAACAATAACATTGTGGATCATCCGAATGACATAAAAAACAAGAACAATGTTGACAACAAGGACAATAACAGCAGAGACAAGTAATTAAATAGGAAACACTCCGGTTTAGATGATACCGATCTATCGGATTGTAACTTATTCTTCTTTCTTAAAAAAATTGTTTAGGAGCAAACAAAGATTTTATTTGTTAGTGTATTCAACTGATTACATTTTTAGTTAAAAAAATGGATTCTCCTT
CDS Sequence
Protein Sequence