Information report for AT4G16520
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- GO:0006995 — involved in — cellular response to nitrogen starvation
- GO:0005515 — enables — protein binding
- GO:0005776 — located in — autophagosome
- GO:0090558 — acts upstream of or within — plant epidermis development
- GO:0010015 — acts upstream of or within — root morphogenesis
- GO:0019439 — acts upstream of or within — aromatic compound catabolic process
- GO:0044248 — acts upstream of or within — cellular catabolic process
- GO:0009826 — acts upstream of or within — unidimensional cell growth
- GO:1901565 — acts upstream of or within — organonitrogen compound catabolic process
- GO:0006520 — acts upstream of or within — amino acid metabolic process
- GO:0005737 — located in — cytoplasm
Functional Keywords
Literature and News
- Leaf senescence and starvation-induced chlorosis are accelerated by the disruption of an Arabidopsis autophagy gene. DOI: 10.1104/pp.011024 ; PMID: 12114572
- Transcriptional profiling of Arabidopsis tissues reveals the unique characteristics of the pollen transcriptome. DOI: 10.1104/pp.103.028241 ; PMID: 14500793
- Processing of ATG8s, ubiquitin-like proteins, and their deconjugation by ATG4s are essential for plant autophagy. DOI: 10.1105/tpc.104.025395 ; PMID: 15494556
- Visualization of autophagy in Arabidopsis using the fluorescent dye monodansylcadaverine and a GFP-AtATG8e fusion protein. DOI: 10.1111/j.1365-313X.2005.02396.x ; PMID: 15860017
- Autophagic nutrient recycling in Arabidopsis directed by the ATG8 and ATG12 conjugation pathways. DOI: 10.1104/pp.105.060673 ; PMID: 16040659
- Starvation-induced expression of autophagy-related genes in Arabidopsis. DOI: 10.1042/BC20040516 ; PMID: 16354162
- Exploiting the wild crucifer Thlaspi arvense to identify conserved and novel genes expressed during a plant's response to cold stress. DOI: 10.1007/s11103-006-9080-4 ; PMID: 16972165
- Genome-wide interacting effects of sucrose and herbicide-mediated stress in Arabidopsis thaliana: novel insights into atrazine toxicity and sucrose-induced tolerance. DOI: 10.1186/1471-2164-8-450 ; PMID: 18053238
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- An autophagy-associated Atg8 protein is involved in the responses of Arabidopsis seedlings to hormonal controls and abiotic stresses. DOI: 10.1093/jxb/ern244 ; PMID: 18836138
- ATI1, a newly identified atg8-interacting protein, binds two different Atg8 homologs. DOI: 10.4161/psb.20030 ; PMID: 22580699
- The deubiquitinating enzyme AMSH1 and the ESCRT-III subunit VPS2.1 are required for autophagic degradation in Arabidopsis. DOI: 10.1105/tpc.113.113399 ; PMID: 23800962
- A BAR-domain protein SH3P2, which binds to phosphatidylinositol 3-phosphate and ATG8, regulates autophagosome formation in Arabidopsis. DOI: 10.1105/tpc.113.118307 ; PMID: 24249832
- Arabidopsis ATG8-INTERACTING PROTEIN1 is involved in autophagy-dependent vesicular trafficking of plastid proteins to the vacuole. DOI: 10.1105/tpc.114.129999 ; PMID: 25281689
- Dicot-specific ATG8-interacting ATI3 proteins interact with conserved UBAC2 proteins and play critical roles in plant stress responses. DOI: 10.1080/15548627.2017.1422856 ; PMID: 29313416
- Overexpression of ATG8 in Arabidopsis Stimulates Autophagic Activity and Increases Nitrogen Remobilization Efficiency and Grain Filling. DOI: 10.1093/pcp/pcy214 ; PMID: 30407574
- ATG8-Binding UIM Proteins Define a New Class of Autophagy Adaptors and Receptors. DOI: 10.1016/j.cell.2019.02.009 ; PMID: 30955882
- Phytopathogen Effectors Use Multiple Mechanisms to Manipulate Plant Autophagy. DOI: 10.1016/j.chom.2020.07.010 ; PMID: 32810441
- Mechanistic insights into an atypical interaction between ATG8 and SH3P2 in Arabidopsis thaliana. DOI: 10.1080/15548627.2021.1976965 ; PMID: 34657568
- Genome-wide association studies of Arabidopsis dark-induced senescence reveals signatures of autophagy in metabolic reprogramming. DOI: 10.1080/15548627.2021.2003041 ; PMID: 34781818
- The phosphatidylinositol 3-phosphate effector FYVE3 regulates FYVE2-dependent autophagy in Arabidopsis thaliana. DOI: 10.3389/fpls.2023.1160162 ; PMID: 37008475
Gene Resources
- UniProt: A0A1P8B738
- EMBL: CP002687
- AlphaFoldDB: A0A1P8B738
- EnsemblPlants: AT4G16520.3
- Gramene: AT4G16520.3
- ExpressionAtlas: AT4G16520
- InterPro: IPR004241, IPR029071
- PANTHER: PTHR10969
- SUPFAM: SSF54236
- Gene3D: 3.10.20.90
- SWISS-MODEL: A0A1P8B738
Sequences
cDNA Sequence
- >AT4G16520.3
GAATTTTTGTAGGTTGCTTATTTGCTTTTTCTTTCATATTTTTTCGTTAATTGTTGTTGTTATCTTCAACGATAGCGTTGTGCTCTGGAGAAGTGTTTGATCGCAGAAAAGCTTCGTTCTTTGTAGTCTACAGGCGTGGAAGGAATGGCAAAAAGCTCGTTCAAGCAAGAGCATGACTTAGAGAAGAGAAGGGCAGAGGCTGCTAGGATTAGAGAGAAGTATCCTGATAGGATTCCGGTGAGACTTTCAGTGTCTCTCTTATACATTGATCGATCATACATTTCTAAAGTTATATGTGATTAGCATATTGTTTCCCTTTCTATGTTCGGATCAATCTTTTGTGTTTGACTGAGTTTATGCAGGTTAAGTTGTTGTGGTTTATGGCCCAGCAATATGGTAGTAATGAACTTATTGGGATATAATGAACTTATTGGGATAGCATCTGGTTTTAAATGGACACCCTACCCGACTAAAGGATGGTTATCAAGTTATTATTGTTTGATTAGCTTCATGCTTGTGATATATGTTTGCCACTGTTTCAACTACATGGAGTTGATTGAGTTATAGTGACTATAACAACATTAGGACTTTGAATTTAGTTGTCATTTTTTGGAACGTGACTTTCTGAAACTCGATTCTTACTGAGTACTTACGGCTTAGATAAGTAGATTTGCATGATTCATGTGGCTACGTGCTTTATGATTCACATGGTAAAAATGACACTTGAGATGATGATTTCCACGCATTTATATTTTTGTGGGATCCAGGTGATTGTTGAGAAGGCTGAGAAGAGTGATATACCAACCATCGACAAGAAAAAGTACCTAGTCCCGGCTGATCTGACTGTGGGGCAGTTTGTGTATGTCATTCGCAAAAGAATCAAATTGAGTGCAGAAAAGGCTATCTTCATATTCGTGGACAATGTTCTTCCTCCAGCAGGTGCGCTCATGTCTTCTGTGTACGAAGAGAAAAAGGATGATGATGGGTTCCTCTATGTCACTTACAGCGGAGAAAACACATTTGGATTTGGATCTCCATAATAGAGACCTCTTGCTGGATATTTCATTTTACTCCTCTCTATTTTCACCAAATATTTCATCTTCTTATTAATTACTAAGCAAGCAAGCCACCTATGTACTTATTCTCTAAGGACCTTTGGTCGGGCGTTAATATGTACAGAAAACATAAAATAATGTATATAATCTTCTTTCAAGGATCTAAAAACCTACTTTAGGTGAATCTATCACATCTCCCTCTTG - >AT4G16520.1
GAATTTTTGTAGGTTGCTTATTTGCTTTTTCTTTCATATTTTTTCGTTAATTGTTGTTGTTATCTTCAACGATAGCGTTGTGCTCTGGAGAAGTGTTTGATCGCAGAAAAGCTTCGTTCTTTGTAGTCTACAGGCGTGGAAGGAATGGCAAAAAGCTCGTTCAAGCAAGAGCATGACTTAGAGAAGAGAAGGGCAGAGGCTGCTAGGATTAGAGAGAAGTATCCTGATAGGATTCCGGTGAGACTTTCAGTGTCTCTCTTATACATTGATCGATCATACATTTCTAAAGTTATATGTGATTAGCATATTGTTTCCCTTTCTATGTTCGGATCAATCTTTTGTGTTTGACTGAGTTTATGCAGGTTAAGTTGTTGTGGTTTATGGCCCAGCAATATGGTAGTAATGAACTTATTGGGATATAATGAACTTATTGGGATAGCATCTGGTTTTAAATGGACACCCTACCCGACTAAAGGATGGTTATCAAGTTATTATTGTTTGATTAGCTTCATGCTTGTGATATATGTTTGCCACTGTTTCAACTACATGGAGTTGATTGAGTTATAGTGACTATAACAACATTAGGACTTTGAATTTAGTTGTCATTTTTTGGAACGTGACTTTCTGAAACTCGATTCTTACTGAGTACTTACGGCTTAGATAAGTAGATTTGCATGATTCATGTGGCTACGTGCTTTATGATTCACATGGTAAAAATGACACTTGAGATGATGATTTCCACGCATTTATATTTTTGTGGGATCCAGGTGATTGTTGAGAAGGCTGAGAAGAGTGATATACCAACCATCGACAAGAAAAAGTACCTAGTCCCGGCTGATCTGACTGTGGGGCAGTTTGTGTATGTCATTCGCAAAAGAATCAAATTGAGTGCAGAAAAGGCTATCTTCATATTCGTGGACAATGTTCTTCCTCCAGCAGGTGCGCTCATGTCTTCTGTGTACGAAGAGAAAAAGGATGATGATGGGTTCCTCTATGTCACTTACAGCGGAGAAAACACATTTGGATTTGGATCTCCATAATAGAGACCTCTTGCTGGATATTTCATTTTACTCCTCTCTATTTTCACCAAATATTTCATCTTCTTATTAATTACTAAGCAAGCAAGCCACCTATGTACTTATTCTCTAAGGACCTTTGGTCGGGCGTTAATATGTACAGAAAACATAAAATAATGTATATAATCTTCTTTCAAGGATCTAAAAACCTACTTTAGGTGAATCTATCACATCTCCCTCTTG - >AT4G16520.2
GAATTTTTGTAGGTTGCTTATTTGCTTTTTCTTTCATATTTTTTCGTTAATTGTTGTTGTTATCTTCAACGATAGCGTTGTGCTCTGGAGAAGTGTTTGATCGCAGAAAAGCTTCGTTCTTTGTAGTCTACAGGCGTGGAAGGAATGGCAAAAAGCTCGTTCAAGCAAGAGCATGACTTAGAGAAGAGAAGGGCAGAGGCTGCTAGGATTAGAGAGAAGTATCCTGATAGGATTCCGGTGAGACTTTCAGTGTCTCTCTTATACATTGATCGATCATACATTTCTAAAGTTATATGTGATTAGCATATTGTTTCCCTTTCTATGTTCGGATCAATCTTTTGTGTTTGACTGAGTTTATGCAGGTTAAGTTGTTGTGGTTTATGGCCCAGCAATATGGTAGTAATGAACTTATTGGGATATAATGAACTTATTGGGATAGCATCTGGTTTTAAATGGACACCCTACCCGACTAAAGGATGGTTATCAAGTTATTATTGTTTGATTAGCTTCATGCTTGTGATATATGTTTGCCACTGTTTCAACTACATGGAGTTGATTGAGTTATAGTGACTATAACAACATTAGGACTTTGAATTTAGTTGTCATTTTTTGGAACGTGACTTTCTGAAACTCGATTCTTACTGAGTACTTACGGCTTAGATAAGTAGATTTGCATGATTCATGTGGCTACGTGCTTTATGATTCACATGGTAAAAATGACACTTGAGATGATGATTTCCACGCATTTATATTTTTGTGGGATCCAGGTGATTGTTGAGAAGGCTGAGAAGAGTGATATACCAACCATCGACAAGAAAAAGTACCTAGTCCCGGCTGATCTGACTGTGGGGCAGTTTGTGTATGTCATTCGCAAAAGAATCAAATTGAGTGCAGAAAAGGCTATCTTCATATTCGTGGACAATGTTCTTCCTCCAGCAGGTGCGCTCATGTCTTCTGTGTACGAAGAGAAAAAGGATGATGATGGGTTCCTCTATGTCACTTACAGCGGAGAAAACACATTTGGATTTGGATCTCCATAATAGAGACCTCTTGCTGGATATTTCATTTTACTCCTCTCTATTTTCACCAAATATTTCATCTTCTTATTAATTACTAAGCAAGCAAGCCACCTATGTACTTATTCTCTAAGGACCTTTGGTCGGGCGTTAATATGTACAGAAAACATAAAATAATGTATATAATCTTCTTTCAAGGATCTAAAAACCTACTTTAGGTGAATCTATCACATCTCCCTCTTG
CDS Sequence
Protein Sequence