Information report for AT4G16430
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- GO:0006355 — involved in — regulation of DNA-templated transcription
- GO:0003700 — enables — DNA-binding transcription factor activity
- GO:0006355 — acts upstream of or within — regulation of DNA-templated transcription
- GO:0005515 — enables — protein binding
- GO:0000976 — enables — transcription cis-regulatory region binding
- GO:0046983 — enables — protein dimerization activity
- GO:0005634 — located in — nucleus
- GO:0005634 — is active in — nucleus
- GO:0010629 — acts upstream of or within — negative regulation of gene expression
Functional Keywords
Literature and News
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity. DOI: 10.1093/molbev/msg088 ; PMID: 12679534
- The Arabidopsis basic/helix-loop-helix transcription factor family. DOI: 10.1105/tpc.013839 ; PMID: 12897250
- Update on the basic helix-loop-helix transcription factor gene family in Arabidopsis thaliana. DOI: 10.1105/tpc.151140 ; PMID: 14600211
- Laser capture microdissection for the analysis of gene expression during embryogenesis of Arabidopsis. DOI: 10.1111/j.1365-313X.2005.02355.x ; PMID: 15773857
- Transcriptional profiling of the Arabidopsis embryo. DOI: 10.1104/pp.106.087668 ; PMID: 17189330
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. DOI: 10.1016/j.diff.2010.02.003 ; PMID: 20219281
- Analysis of IIId, IIIe and IVa group basic-helix-loop-helix proteins expressed in Arabidopsis root epidermis. DOI: 10.1016/j.plantsci.2011.07.006 ; PMID: 21889054
- Basic helix-loop-helix transcription factors JASMONATE-ASSOCIATED MYC2-LIKE1 (JAM1), JAM2, and JAM3 are negative regulators of jasmonate responses in Arabidopsis. DOI: 10.1104/pp.113.220129 ; PMID: 23852442
- Two bHLH-type transcription factors, JA-ASSOCIATED MYC2-LIKE2 and JAM3, are transcriptional repressors and affect male fertility. DOI: 10.4161/psb.26473 ; PMID: 24056034
- The bHLH subgroup IIId factors negatively regulate jasmonate-mediated plant defense and development. DOI: 10.1371/journal.pgen.1003653 ; PMID: 23935516
- bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses. DOI: 10.1371/journal.pone.0086182 ; PMID: 24465948
- Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling. DOI: 10.4161/psb.27639 ; PMID: 24394987
- Endogenous Arabidopsis messenger RNAs transported to distant tissues. DOI: 10.1038/nplants.2015.25 ; PMID: 27247031
- The G-Box Transcriptional Regulatory Code in Arabidopsis. DOI: 10.1104/pp.17.01086 ; PMID: 28864470
- bHLH13 Regulates Jasmonate-Mediated Defense Responses and Growth. DOI: 10.1177/1176934318790265 ; PMID: 30046236
- Non-TZF Protein AtC3H59/ZFWD3 Is Involved in Seed Germination, Seedling Development, and Seed Development, Interacting with PPPDE Family Protein Desi1 in Arabidopsis. DOI: 10.3390/ijms22094738 ; PMID: 33947021
- CO interacts with JAZ repressors and bHLH subgroup IIId factors to negatively regulate jasmonate signaling in Arabidopsis seedlings. DOI: 10.1093/plcell/koac331 ; PMID: 36427252
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity. DOI: 10.1093/molbev/msg088 ; PMID: 12679534
Gene Resources
- UniProt: A0A178V653
- EMBL: CACRSJ010000109, LUHQ01000004
- AlphaFoldDB: A0A178V653
- EnsemblPlants: AT4G16430.1
- Gramene: AT4G16430.1
- KEGG: ath:AT4G16430
- Orthologous matrix: ALCKIVE
- ExpressionAtlas: AT4G16430
- InterPro: IPR011598, IPR025610, IPR036638
- PANTHER: PTHR11514, PTHR11514:SF53
- SUPFAM: SSF47459
- PROSITE: PS50888
- Gene3D: 4.10.280.10
- SWISS-MODEL: A0A178V653
- Conserved Domain Database: cd11449
Sequences
cDNA Sequence
- >AT4G16430.1
CATAGTCTCTTCCTCTTTTCTTCTTTCTTCGTCAATTTCAGAACAAGTCACTACAGATCTGAAGTGAACCAAGCTCAGGTTTTGTCTTCTCTTTGATCATTCCTTTCTCAGCAATATAAATTAGAGTTATATCCTTTATAAAGGATTTTGCTTTTTCACCAACAAACCCTAAATTCGGTGTCTCAGCAAGAATCACGTGATTCTCGTTCCTCTTCCTCACGAAACCCATCATCTTCTATCTCATTTGAGAAATGGGTCAAAAGTTTTGGGAGAATCAAGAAGATCGAGCGATGGTTGAATCCACCATAGGCTCTGAAGCTTGCGACTTTTTCATCTCAACAGCTTCAGCTTCCAACACTGCCTTGTCCAAGCTTGTCTCACCACCAAGTGATTCCAATCTCCAACAAGGGTTACGTCACGTTGTTGAAGGATCTGATTGGGATTATGCTCTTTTCTGGCTAGCGTCCAACGTTAATAGCTCTGATGGTTGTGTCTTGATCTGGGGAGATGGTCATTGCCGTGTCAAAAAGGGTGCTTCAGGTGAGGATTACTCTCAGCAAGATGAGATCAAAAGACGTGTGCTTCGCAAGCTTCACTTGTCGTTCGTTGGTTCAGATGAAGATCATCGTTTGGTGAAATCAGGAGCTCTTACTGATCTCGACATGTTTTATCTGGCTTCTTTGTACTTTTCCTTTAGGTGTGATACCAATAAGTACGGTCCTGCTGGAACCTATGTGTCTGGGAAGCCTCTTTGGGCTGCAGATTTGCCTAGCTGCTTGAGTTATTATAGGGTTAGGTCTTTCTTAGCTAGGTCAGCTGGTTTTCAGACTGTGTTGTCTGTACCAGTGAATTCTGGAGTTGTGGAGCTTGGTTCTTTAAGACATATTCCAGAAGATAAGAGTGTGATTGAGATGGTGAAATCAGTGTTTGGTGGGTCTGACTTTGTTCAGGCTAAAGAAGCTCCTAAAATCTTTGGTCGACAGCTGAGTCTTGGTGGAGCAAAACCTCGGTCTATGAGTATTAATTTCTCCCCGAAGACCGAGGATGACACGGGTTTCTCATTGGAATCGTATGAGGTGCAAGCGATCGGAGGCTCTAATCAAGTGTATGGTTATGAGCAAGGGAAAGATGAGACATTGTATCTAACTGACGAGCAAAAGCCGAGGAAGAGAGGGAGAAAACCAGCAAATGGAAGAGAAGAGGCTCTAAACCATGTGGAAGCGGAACGGCAGAGGAGGGAGAAGCTGAACCAGAGATTCTACGCTTTGAGAGCGGTGGTGCCTAACATCTCCAAGATGGACAAGGCTTCGCTCCTTGCAGACGCAATCACTTACATCACGGATATGCAGAAGAAAATCAGGGTGTATGAAACAGAGAAGCAGATAATGAAGAGGAGGGAGAGTAATCAGATAACTCCAGCAGAGGTTGATTATCAACAGAGGCATGATGATGCAGTTGTAAGGCTAAGCTGTCCGTTGGAAACTCATCCAGTTTCAAAGGTGATACAAACGTTGAGGGAGAATGAAGTTATGCCTCATGATTCCAACGTGGCCATCACAGAGGAGGGTGTGGTTCACACATTCACTCTCCGGCCTCAGGGTGGCTGCACCGCTGAGCAGTTGAAGGACAAGCTCCTTGCCTCTCTATCACAGTAACTATCACAGCAGTAACTGCTATGTAATAAGTGTAACCGTGTTGGAGGTTGTATCAATGTACTATTGCAAGCCAACCAAAAAAAACTCCAGCTTAGTAGGATCGTGTAATTTTCCTTATATGTAATGTTGAGATTTGTCTTTTACATATAAAGATTTGAGCAGAAAGCTTCACACTT
CDS Sequence
Protein Sequence