Information report for AT4G16144
Gene Details
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Functional Descriptions
- GO:0005770 — located in — late endosome
- GO:0070536 — acts upstream of or within — protein K63-linked deubiquitination
- GO:0071108 — involved in — protein K48-linked deubiquitination
- GO:0061578 — enables — K63-linked deubiquitinase activity
- GO:0071108 — acts upstream of or within — protein K48-linked deubiquitination
- GO:0005515 — enables — protein binding
- GO:0005737 — located in — cytoplasm
- GO:0005768 — is active in — endosome
- GO:0090316 — involved in — positive regulation of intracellular protein transport
- GO:0046907 — acts upstream of or within — intracellular transport
- GO:0070536 — involved in — protein K63-linked deubiquitination
- GO:0007033 — acts upstream of or within — vacuole organization
- GO:0016020 — colocalizes with — membrane
- GO:0006897 — acts upstream of or within — endocytosis
- GO:0044090 — involved in — positive regulation of vacuole organization
- GO:0005634 — located in — nucleus
Functional Keywords
Literature and News
- The deubiquitinating enzyme AMSH3 is required for intracellular trafficking and vacuole biogenesis in Arabidopsis thaliana. DOI: 10.1105/tpc.110.075952 ; PMID: 20543027
- The Arabidopsis deubiquitinating enzyme AMSH3 interacts with ESCRT-III subunits and regulates their localization. DOI: 10.1105/tpc.111.087254 ; PMID: 21810997
- The deubiquitinating enzyme AMSH1 and the ESCRT-III subunit VPS2.1 are required for autophagic degradation in Arabidopsis. DOI: 10.1105/tpc.113.113399 ; PMID: 23800962
- Nonselective Chemical Inhibition of Sec7 Domain-Containing ARF GTPase Exchange Factors. DOI: 10.1105/tpc.18.00145 ; PMID: 30018157
- Patellin protein family functions in plant development and stress response. DOI: 10.1016/j.jplph.2019.01.012 ; PMID: 30690193
Gene Resources
- UniProt: A0A2H1ZEN3
- EMBL: CP002687
- AlphaFoldDB: A0A2H1ZEN3
- EnsemblPlants: AT4G16144.1
- Gramene: AT4G16144.1
- KEGG: ath:AT4G16144
- Orthologous matrix: HEVAPIM
- ExpressionAtlas: AT4G16144
- InterPro: IPR000555, IPR015063
- PANTHER: PTHR12947, PTHR12947:SF18
- Gene3D: 1.20.58.80, 3.40.140.10
- SWISS-MODEL: A0A2H1ZEN3
Homologs
- Capsicum annuum T459_15844
Sequences
cDNA Sequence
- >AT4G16144.1
TTTATTCCACTTGATATAATATTGCAACTCCACACAATTCGATCATCAGCTGGTTGAAACCACTTAATAGTTCCATAAGATATCATTCCACATTGAAAATTTCAAATATACCCCTAAAGTTATAAGAAAATGTCGACATTGCCCAATATGTTTCGACTGATTTTTTTTTAACTTGGTTTGGTAATCATGTCGAAATTGCCAATTGGTTTCTTAATAAACGACGCAGTTTTAATTCTTCTCCGTCTCTTACGTTTTCTCAGCGCCATTGATCCTTCGATCTCAGCAAAACTTTCGCCGGCAAAGTGATTTGAATTCGTGAAGCACTAAATTGTATAATCAGATACGGTGAGATGAAGATTGATCTGAACAAGGTGGCTCGTGAAATCGAAGTGGATAATCGTATTCCTCTCCGTAATTACTACCGCATCGCCGATAATCTCCTCCGACAGGCCAGTATATATCGCGAAGAGAAGAATGTGGTGGATTTGTATATCATGCTTCTTAGATATTCAAGTTTGATTTCTGAAACAATTCCTTTCCATCGAGATTACCAGGCATCGCTTCCACAAGAAAGACTTGGGAGTAGGAAGAGGTTGCGTGCTGTAATCAATGAGCTCGAGTCTCTGAAACCGGAATTCAACCAGCTAGTGGATAAGCTGAACAGAGTTGAGGATGAATCCCGTCAGGATGGAAGTGATCTCCCGGTCGTATCATATAGTTCAGATGCTGTTGAGTGGCCTCCTGCTCACAAAGCTTCATACTCCAGACCTGATATTAACAAGCCCTTACCGACATCTCAACCATCCTGGACGTATAACAATAATCTGACTTCATCATCAAATCGTACACAGATTGATCAGCAGTTCCAGAAGCTATCTTTTGATTTCCTGCCTCCAAACCAAGCAACCTTGTCAAGACATTCATTTCTAGGTCCGAATGGTCTTAAAAGGCAAATGGTTGCACCCAAGTCAGAGATAAAGGTTCAATATCCGAGTAATACAGATTGGGGTTCTGCGGACAATTCAGGTTTAATTGAAGCTGGACCTAGCAGTTCCTCAGCATCACTTAATGGTGATTCTCAAGAAGTCTCAACACTGAACTCTGTGCTCTCCTTAGATGATGGTCGATGGCAGCGTCATTCTGAGGCAGTAAATTCCCAGTTTATTAGCGACGCAACTGAAGACCCGTTTCAGTTTGTCGGTATGAAGCAACCTTCCCCTCCTCCCGTGCTTGCTCAAGTGCATCAAGAGTTAGCCCAAATTTGCCCATCTAAAGTAGCTGATCCTAGACCAGGACCTGCAATTCCTTCCCTAGAAGGAAAAGAGGGCAGCAATTCTTATCAGCATTTGCATGTGCCTGTGCGCATAATGGATGATTTCCTAAGGCTAGCTCGGTCAAACACAGAACGGAATTTAGAAACTTGTGGAGTACTTGCTGGTTCTCTGAAAAACAGGGTTTTTCATATCACTACTCTCATAATCCCAAAGCAGGAGTCTACCTCAGATTCTTGCCAAACACTAAACGAGAAGAAATATTCGAGTACAGGACAGACTCTCTCTATTTCCCTTGGGTTGGATTCATACACACCCTACACAAACTTGCTTCATGTCATCAGTTGATCTACACACACACTACTCGTATCAGATAATGCTACCGGAGGCGGTGGCAATCGTAATGGCACCAACAGACGAATCAACACCTCATGGAATATTCCATCTCTCTGATCCATCAGGCGTATCTGTGATCCGAAACTGCCAGCAACGAGGCTTCCACCCACACGAAGAATCAGAAGACGGTAACCCAATCTACGAGCATTGCTCACACGTCTTCCTCAATGCCAAACTCAAATATGAAGTCCTCGATCTCCGCTAAAAGCCAACCTCCATCACCATGTTATTATTTTTCCTGGAGTCTTAACTTTAAAGAGACATTAAAAAGACCTCAGAGATCAGATGTCTCAGCCGTACATATATGTGTATACTTCTTAAAAAAACCTTCTCTTTAAAGTTCCAAACTTGGCTGAGCCGTCTTAAGTAATGATGATTGTGTTTATTTATAACGAGTACACTTTTAAATTCGTATGCACCATTTCACAAAGCCAGATGTTTGATTAAAAAAACATAAGTATTTTTTTCT
CDS Sequence
- >AT4G16144.1
ATGAAGATTGATCTGAACAAGGTGGCTCGTGAAATCGAAGTGGATAATCGTATTCCTCTCCGTAATTACTACCGCATCGCCGATAATCTCCTCCGACAGGCCAGTATATATCGCGAAGAGAAGAATGTGGTGGATTTGTATATCATGCTTCTTAGATATTCAAGTTTGATTTCTGAAACAATTCCTTTCCATCGAGATTACCAGGCATCGCTTCCACAAGAAAGACTTGGGAGTAGGAAGAGGTTGCGTGCTGTAATCAATGAGCTCGAGTCTCTGAAACCGGAATTCAACCAGCTAGTGGATAAGCTGAACAGAGTTGAGGATGAATCCCGTCAGGATGGAAGTGATCTCCCGGTCGTATCATATAGTTCAGATGCTGTTGAGTGGCCTCCTGCTCACAAAGCTTCATACTCCAGACCTGATATTAACAAGCCCTTACCGACATCTCAACCATCCTGGACGTATAACAATAATCTGACTTCATCATCAAATCGTACACAGATTGATCAGCAGTTCCAGAAGCTATCTTTTGATTTCCTGCCTCCAAACCAAGCAACCTTGTCAAGACATTCATTTCTAGGTCCGAATGGTCTTAAAAGGCAAATGGTTGCACCCAAGTCAGAGATAAAGGTTCAATATCCGAGTAATACAGATTGGGGTTCTGCGGACAATTCAGGTTTAATTGAAGCTGGACCTAGCAGTTCCTCAGCATCACTTAATGGTGATTCTCAAGAAGTCTCAACACTGAACTCTGTGCTCTCCTTAGATGATGGTCGATGGCAGCGTCATTCTGAGGCAGTAAATTCCCAGTTTATTAGCGACGCAACTGAAGACCCGTTTCAGTTTGTCGGTATGAAGCAACCTTCCCCTCCTCCCGTGCTTGCTCAAGTGCATCAAGAGTTAGCCCAAATTTGCCCATCTAAAGTAGCTGATCCTAGACCAGGACCTGCAATTCCTTCCCTAGAAGGAAAAGAGGGCAGCAATTCTTATCAGCATTTGCATGTGCCTGTGCGCATAATGGATGATTTCCTAAGGCTAGCTCGGTCAAACACAGAACGGAATTTAGAAACTTGTGGAGTACTTGCTGGTTCTCTGAAAAACAGGGTTTTTCATATCACTACTCTCATAATCCCAAAGCAGGAGTCTACCTCAGATTCTTGCCAAACACTAAACGAGAAGAAATATTCGAGTACAGGACAGACTCTCTCTATTTCCCTTGGGTTGGATTCATACACACCCTACACAAACTTGCTTCATGTCATCAGTTGA
Protein Sequence
- >AT4G16144.1
MKIDLNKVAREIEVDNRIPLRNYYRIADNLLRQASIYREEKNVVDLYIMLLRYSSLISETIPFHRDYQASLPQERLGSRKRLRAVINELESLKPEFNQLVDKLNRVEDESRQDGSDLPVVSYSSDAVEWPPAHKASYSRPDINKPLPTSQPSWTYNNNLTSSSNRTQIDQQFQKLSFDFLPPNQATLSRHSFLGPNGLKRQMVAPKSEIKVQYPSNTDWGSADNSGLIEAGPSSSSASLNGDSQEVSTLNSVLSLDDGRWQRHSEAVNSQFISDATEDPFQFVGMKQPSPPPVLAQVHQELAQICPSKVADPRPGPAIPSLEGKEGSNSYQHLHVPVRIMDDFLRLARSNTERNLETCGVLAGSLKNRVFHITTLIIPKQESTSDSCQTLNEKKYSSTGQTLSISLGLDSYTPYTNLLHVIS