Information report for AT4G15900
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0000293 — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)
- GO:0045892 — acts upstream of or within — negative regulation of DNA-templated transcription
- GO:0009755 — acts upstream of or within — hormone-mediated signaling pathway
- GO:0048825 — acts upstream of or within — cotyledon development
- GO:0000398 — involved in — mRNA splicing, via spliceosome
- GO:0005515 — enables — protein binding
- GO:0010182 — acts upstream of or within — sugar mediated signaling pathway
- GO:0010154 — acts upstream of or within — fruit development
- GO:0005634 — located in — nucleus
- GO:0048366 — acts upstream of or within — leaf development
- GO:0042742 — acts upstream of or within — defense response to bacterium
- GO:0006396 — involved in — RNA processing
- GO:0005829 — located in — cytosol
- GO:0009749 — acts upstream of or within — response to glucose
- GO:0050832 — acts upstream of or within — defense response to fungus
- GO:0048364 — acts upstream of or within — root development
- GO:0080008 — part of — Cul4-RING E3 ubiquitin ligase complex
- GO:0071013 — part of — catalytic step 2 spliceosome
- GO:0000974 — part of — Prp19 complex
- GO:0016607 — located in — nuclear speck
Functional Keywords
Literature and News
- Identification of plant cytoskeletal, cell cycle-related and polarity-related proteins using Schizosaccharomyces pombe. DOI: 10.1046/j.1365-313x.1996.10040761.x ; PMID: 8893552
- SKP1-SnRK protein kinase interactions mediate proteasomal binding of a plant SCF ubiquitin ligase. DOI: 10.1093/emboj/20.11.2742 ; PMID: 11387208
- Light-dependent induction of proline biosynthesis by abscisic acid and salt stress is inhibited by brassinosteroid in Arabidopsis. DOI: 10.1023/a:1022043000516 ; PMID: 12602867
- Regulation of plant innate immunity by three proteins in a complex conserved across the plant and animal kingdoms. DOI: 10.1101/gad.1559607 ; PMID: 17575050
- Signaling from an altered cell wall to the nucleus mediates sugar-responsive growth and development in Arabidopsis thaliana. DOI: 10.1105/tpc.106.049965 ; PMID: 17693536
- Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases. DOI: 10.1105/tpc.107.055418 ; PMID: 18223036
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Two Prp19-like U-box proteins in the MOS4-associated complex play redundant roles in plant innate immunity. DOI: 10.1371/journal.ppat.1000526 ; PMID: 19629177
- Systematic identification of functional plant modules through the integration of complementary data sources. DOI: 10.1104/pp.112.196725 ; PMID: 22589469
- PRL1, an RNA-binding protein, positively regulates the accumulation of miRNAs and siRNAs in Arabidopsis. DOI: 10.1371/journal.pgen.1004841 ; PMID: 25474114
- The Arabidopsis MOS4-Associated Complex Promotes MicroRNA Biogenesis and Precursor Messenger RNA Splicing. DOI: 10.1105/tpc.17.00370 ; PMID: 28947490
- MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis. DOI: 10.1105/tpc.17.00953 ; PMID: 29437988
- Decoys provide a scalable platform for the identification of plant E3 ubiquitin ligases that regulate circadian function. DOI: 10.7554/eLife.44558 ; PMID: 30950791
- The ATR-WEE1 kinase module inhibits the MAC complex to regulate replication stress response. DOI: 10.1093/nar/gkaa1082 ; PMID: 33450002
- CONSTITUTIVE EXPRESSER OF PATHOGENESIS-RELATED GENES 5 is an RNA-binding protein controlling plant immunity via an RNA processing complex. DOI: 10.1093/plcell/koac037 ; PMID: 35137215
- MYB43 as a novel substrate for CRL4(PRL1) E3 ligases negatively regulates cadmium tolerance through transcriptional inhibition of HMAs in Arabidopsis. DOI: 10.1111/nph.18020 ; PMID: 35129221
- Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases. DOI: 10.1105/tpc.107.055418 ; PMID: 18223036
Gene Resources
- UniProt: Q08A56
- EMBL: BT029023
- AlphaFoldDB: Q08A56
- EnsemblPlants: AT4G15900.1
- Gramene: AT4G15900.1
- KEGG: ath:AT4G15900
- Orthologous matrix: FAMCFDQ
- ExpressionAtlas: AT4G15900
Homologs
- Actinidia chinensis CEY00_Acc05934, CEY00_Acc30903
- Brassica napus BnaC02G0056000ZS, BnaA02G0048600ZS
- Brassica oleracea Bo2g011320
- Brassica rapa Bra023416
- Lactuca sativa gene-LSAT_2X81981
- Musa acuminata Ma02_g10470, Ma04_g10720
- Oryza sativa OsKTN80c;OsWD40-26
Sequences
cDNA Sequence
- >AT4G15900.1
ATTTTTCGGCGCAACAAAATCGTGAAATTGATATAAATAAACTCGAGATTATTAATATAACCCTTTTTCACTTCACTTCTCTTTCTCTCTAAACCCTAAAAGAAGAACGATGCCGGCTCCGACGACGGAGATCGAACCCATCGAAGCACAGTCACTGAAAAAGCTCAGTCTCAAATCCCTCAAACGATCACTTGAACTCTTCTCTCCCGTCCATGGCCAATTCCCTCCTCCTGACCCGGAAGCCAAGCAGATTCGTCTCAGCCATAAGATGAAAGTTGCGTTTGGAGGTGTAGAACCTGTTGTGAGTCAACCTCCACGTCAACCTGACCGCATCAATGAGCAGCCAGGACCTTCAAATGCTCTTTCCCTCGCAGCTCCTGAAGGGTCTAAGAGTACGCAAAAGGGTGCGACAGAGAGTGCTATTGTTGTTGGTCCAACTTTACTGCGTCCAATACTGCCTAAAGGCTTGAACTATACAGGTTCCTCAGGGAAGAGCACCACCATTATACCTGCAAATGTATCTTCATATCAAAGAAATCTGTCAACTGCTGCATTAATGGAGAGAATACCAAGTAGATGGCCCCGGCCAGAGTGGCATGCACCATGGAAGAATTACAGGGTCATTCAGGGGCACTTGGGTTGGGTCAGATCTGTTGCGTTTGACCCGAGTAATGAATGGTTTTGTACTGGTTCAGCTGATCGTACCATCAAGATATGGGATGTAGCAACTGGAGTTCTGAAGCTAACACTTACTGGGCATATCGAGCAAGTACGAGGCCTCGCTGTAAGCAATCGACATACCTATATGTTCTCTGCTGGTGATGACAAGCAAGTCAAATGCTGGGACCTTGAGCAGAATAAGGTTATCCGATCTTATCATGGTCACTTGAGTGGTGTCTATTGCTTAGCTCTGCACCCAACTTTGGATGTTTTATTAACTGGGGGGCGAGACTCTGTCTGCAGGGTGTGGGATATTCGTACCAAGATGCAAATTTTTGCACTCTCAGGACATGACAACACCGTTTGTTCTGTATTTACTCGTCCAACAGACCCACAAGTTGTCACCGGATCCCATGACACGACCATTAAATTTTGGGACCTTCGATATGGAAAAACAATGTCAACGCTAACACATCATAAGAAATCTGTCCGAGCAATGACCCTCCATCCTAAAGAGAATGCCTTTGCTTCTGCATCAGCTGACAACACCAAGAAATTTAGCCTTCCAAAGGGAGAGTTCTGCCACAACATGCTTTCGCAACAGAAAACCATAATTAATGCAATGGCTGTAAACGAGGATGGTGTGATGGTCACTGGAGGTGATAATGGAAGTATATGGTTCTGGGACTGGAAGAGTGGTCACAGTTTCCAACAGTCAGAAACTATCGTACAGCCTGGTTCCCTGGAGAGTGAAGCGGGTATATATGCAGCGTGTTATGATAATACAGGTTCAAGATTGGTAACATGCGAGGCTGATAAGACGATAAAGATGTGGAAAGAAGATGAGAATGCAACTCCAGAAACTCATCCTATCAATTTCAAACCACCAAAGGAGATTAGGCGCTTCTAAATAACTTGTATCTGTAACTCAAAGCTCTTGTTGGAATCTCACTAATCTCTTCATGATTCTGTTTCCTAGATCAACTTTTGAGAGGGGACCTTTGTTTTGTGGTGGGGAGGAAACAAAAGGCCATGTACTTTATGTATTTTAAGGGCATTTGTAATTTTTTCTATCAACAATAATAGATCATGTATTGTTGTTTATGTTGAGAGAACTTTGTTACTTTTATCTCCCGTCTCTTGATTCTCTTCGTTAGTACTTATCGAAGATCTATCATGATTTCTGTGCAACCAAATCTGTGAAGTTTTGTAGGACGAATCTAAGTATTTGATCAACAACTTATATCTCTAGTCTCCACCACTGAAAGTTTTCAG
CDS Sequence
- >AT4G15900.1
ATGCCGGCTCCGACGACGGAGATCGAACCCATCGAAGCACAGTCACTGAAAAAGCTCAGTCTCAAATCCCTCAAACGATCACTTGAACTCTTCTCTCCCGTCCATGGCCAATTCCCTCCTCCTGACCCGGAAGCCAAGCAGATTCGTCTCAGCCATAAGATGAAAGTTGCGTTTGGAGGTGTAGAACCTGTTGTGAGTCAACCTCCACGTCAACCTGACCGCATCAATGAGCAGCCAGGACCTTCAAATGCTCTTTCCCTCGCAGCTCCTGAAGGGTCTAAGAGTACGCAAAAGGGTGCGACAGAGAGTGCTATTGTTGTTGGTCCAACTTTACTGCGTCCAATACTGCCTAAAGGCTTGAACTATACAGGTTCCTCAGGGAAGAGCACCACCATTATACCTGCAAATGTATCTTCATATCAAAGAAATCTGTCAACTGCTGCATTAATGGAGAGAATACCAAGTAGATGGCCCCGGCCAGAGTGGCATGCACCATGGAAGAATTACAGGGTCATTCAGGGGCACTTGGGTTGGGTCAGATCTGTTGCGTTTGACCCGAGTAATGAATGGTTTTGTACTGGTTCAGCTGATCGTACCATCAAGATATGGGATGTAGCAACTGGAGTTCTGAAGCTAACACTTACTGGGCATATCGAGCAAGTACGAGGCCTCGCTGTAAGCAATCGACATACCTATATGTTCTCTGCTGGTGATGACAAGCAAGTCAAATGCTGGGACCTTGAGCAGAATAAGGTTATCCGATCTTATCATGGTCACTTGAGTGGTGTCTATTGCTTAGCTCTGCACCCAACTTTGGATGTTTTATTAACTGGGGGGCGAGACTCTGTCTGCAGGGTGTGGGATATTCGTACCAAGATGCAAATTTTTGCACTCTCAGGACATGACAACACCGTTTGTTCTGTATTTACTCGTCCAACAGACCCACAAGTTGTCACCGGATCCCATGACACGACCATTAAATTTTGGGACCTTCGATATGGAAAAACAATGTCAACGCTAACACATCATAAGAAATCTGTCCGAGCAATGACCCTCCATCCTAAAGAGAATGCCTTTGCTTCTGCATCAGCTGACAACACCAAGAAATTTAGCCTTCCAAAGGGAGAGTTCTGCCACAACATGCTTTCGCAACAGAAAACCATAATTAATGCAATGGCTGTAAACGAGGATGGTGTGATGGTCACTGGAGGTGATAATGGAAGTATATGGTTCTGGGACTGGAAGAGTGGTCACAGTTTCCAACAGTCAGAAACTATCGTACAGCCTGGTTCCCTGGAGAGTGAAGCGGGTATATATGCAGCGTGTTATGATAATACAGGTTCAAGATTGGTAACATGCGAGGCTGATAAGACGATAAAGATGTGGAAAGAAGATGAGAATGCAACTCCAGAAACTCATCCTATCAATTTCAAACCACCAAAGGAGATTAGGCGCTTCTAA
Protein Sequence
- >AT4G15900.1
MPAPTTEIEPIEAQSLKKLSLKSLKRSLELFSPVHGQFPPPDPEAKQIRLSHKMKVAFGGVEPVVSQPPRQPDRINEQPGPSNALSLAAPEGSKSTQKGATESAIVVGPTLLRPILPKGLNYTGSSGKSTTIIPANVSSYQRNLSTAALMERIPSRWPRPEWHAPWKNYRVIQGHLGWVRSVAFDPSNEWFCTGSADRTIKIWDVATGVLKLTLTGHIEQVRGLAVSNRHTYMFSAGDDKQVKCWDLEQNKVIRSYHGHLSGVYCLALHPTLDVLLTGGRDSVCRVWDIRTKMQIFALSGHDNTVCSVFTRPTDPQVVTGSHDTTIKFWDLRYGKTMSTLTHHKKSVRAMTLHPKENAFASASADNTKKFSLPKGEFCHNMLSQQKTIINAMAVNEDGVMVTGGDNGSIWFWDWKSGHSFQQSETIVQPGSLESEAGIYAACYDNTGSRLVTCEADKTIKMWKEDENATPETHPINFKPPKEIRRF