Information report for AT3G50410
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0005660 — hydathode — hidatodo (Spanish, exact), 排水組織 (Japanese, exact)
- PO:0006339 — juvenile vascular leaf — hoja juvenil (Spanish, exact), 維管束系幼葉 (Japanese, exact)
- PO:0020041 — stipule — estípula (Spanish, exact), 托葉 (Japanese, exact)
- PO:0020147 — root apical meristem — RAM (exact), meristema apical de la raíz (Spanish, exact), 根端分裂組織 (Japanese, exact), promeristem (broad)
- PO:0020148 — shoot apical meristem — SAM (exact), meristema apical del epiblasto (epiblastema) (Spanish, exact), 茎頂分裂組織 (Japanese, exact), primary shoot meristem (related), promeristem (broad)
- GO:0000976 — enables — transcription cis-regulatory region binding
- GO:0009751 — acts upstream of or within — response to salicylic acid
- GO:0005634 — located in — nucleus
- GO:0042545 — acts upstream of or within — cell wall modification
- GO:0003700 — enables — DNA-binding transcription factor activity
- GO:0045893 — acts upstream of or within — positive regulation of DNA-templated transcription
- GO:0003677 — enables — DNA binding
- GO:0045787 — acts upstream of or within — positive regulation of cell cycle
- GO:0005515 — enables — protein binding
- GO:0009733 — acts upstream of or within — response to auxin
- GO:0008270 — enables — zinc ion binding
Functional Keywords
Literature and News
- Characterization of salicylic acid-responsive, arabidopsis Dof domain proteins: overexpression of OBP3 leads to growth defects. DOI: 10.1046/j.1365-313x.2000.00678.x ; PMID: 10758484
- The promoter of a H2O2-inducible, Arabidopsis glutathione S-transferase gene and OBP1-binding sites. DOI: 10.1046/j.1365-313x.1996.10060955.x ; PMID: 9011080
- Interactions between distinct types of DNA binding proteins enhance binding to ocs element promoter sequences. DOI: 10.1105/tpc.7.12.2241 ; PMID: 8718629
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- The Dof family of plant transcription factors. DOI: 10.1016/s1360-1385(02)02362-2 ; PMID: 12475498
- The Arabidopsis COG1 gene encodes a Dof domain transcription factor and negatively regulates phytochrome signaling. DOI: 10.1046/j.1365-313x.2003.01710.x ; PMID: 12694592
- Genome-wide comparative phylogenetic analysis of the rice and Arabidopsis Dof gene families. DOI: 10.1186/1471-2148-3-17 ; PMID: 12877745
- Generation of Arabidopsis protein chips for antibody and serum screening. DOI: 10.1023/a:1025424814739 ; PMID: 14558660
- The ENHANCER OF SHOOT REGENERATION 2 gene in Arabidopsis regulates CUP-SHAPED COTYLEDON 1 at the transcriptional level and controls cotyledon development. DOI: 10.1093/pcp/pcl023 ; PMID: 17056621
- Putative cold acclimation pathways in Arabidopsis thaliana identified by a combined analysis of mRNA co-expression patterns, promoter motifs and transcription factors. DOI: 10.1186/1471-2164-8-304 ; PMID: 17764576
- The DOF transcription factor OBP1 is involved in cell cycle regulation in Arabidopsis thaliana. DOI: 10.1111/j.1365-313X.2008.03641.x ; PMID: 18665917
- Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana. DOI: 10.1093/molbev/msq204 ; PMID: 20736450
- Enhanced Y1H assays for Arabidopsis. DOI: 10.1038/nmeth.1750 ; PMID: 22037706
- Expression, purification and DNA-binding properties of zinc finger domains of DOF proteins from Arabidopsis thaliana. DOI: 10.15171/bi.2018.19 ; PMID: 30211076
- Transcriptional regulation of nitrogen-associated metabolism and growth. DOI: 10.1038/s41586-018-0656-3 ; PMID: 30356219
- A PXY-Mediated Transcriptional Network Integrates Signaling Mechanisms to Control Vascular Development in Arabidopsis. DOI: 10.1105/tpc.19.00562 ; PMID: 31806676
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. DOI: 10.1093/molbev/msj051 ; PMID: 16280546
Gene Resources
- UniProt: A0A178VFT5
- EMBL: CACRSJ010000106, LR881468, LUHQ01000003
- AlphaFoldDB: A0A178VFT5
- EnsemblPlants: AT3G50410.1
- Gramene: AT3G50410.1
- KEGG: ath:AT3G50410
Homologs
- Brassica napus GSBRNA2T00014510001, GSBRNA2T00113462001, GSBRNA2T00138646001, GSBRNA2T00021458001, GSBRNA2T00002041001, GSBRNA2T00007977001
- Brassica oleracea XP_013591242.1, XP_013602377.1, XP_013593582.1, XP_013591249.1
- Brassica rapa XP_009136544.1, XP_009101840.1, XP_009115716.1
- Raphanus raphanistrum RrC3755_p1
Sequences
cDNA Sequence
- >AT3G50410.1
AAAAGACAAATTTCAAAGACAAGAGAGAAGAGAGAGATAGAGAGCGTGGCCTCTAATCAACCCAACACCCTCTGTCAAAAACAAGCCTGACTTTCTTCTCCATCCCCATTTCTATCTGCGCATGTCTCTCTCTTTCTTCTCCATAAAAAACCAAATTCTCACTCTCTCATACCCTAAAGTTTCAACCTTTAAACCCTAAAACCAAAAAAGCTTCAGTCTTTTGCATCACTTCCCTTAAAGCTTCAACCTTTCTCCGATTATGCCGACGTCTGACTCCGGTGAACCACGGCGAATAGCTATGAAACCTAACGGCGTAACAGTTCCGATTTCTGACCAGCAAGAACAGCTTCCATGTCCTCGTTGTGACTCATCCAACACTAAGTTCTGTTACTACAACAACTACAACTTCTCTCAGCCTCGTCACTTCTGCAAAGCTTGTCGTCGTTACTGGACTCACGGTGGTACTCTCCGTGACGTTCCTGTCGGTGGTGGTACTCGTAAAAGCGCGAAACGTTCCCGCACTTGCTCGAACTCTTCTTCCTCCTCTGTTTCTGGTGTCGTCTCTAACTCTAACGGTGTTCCGTTACAAACGACGCCTGTTCTCTTCCCTCAGTCGTCAATCTCTAACGGCGTTACTCACACAGTAACTGAAAGCGACGGAAAGGGAAGTGCTTTATCTCTCTGTGGAAGTTTCACCTCCACTCTGTTGAACCATAACGCTGCTGCGACGGCTACGCATGGATCCGGTTCGGTTATTGGTATCGGAGGTTTTGGAATCGGACTCGGGTCGGGTTTTGATGACGTCAGCTTTGGACTCGGAAGAGCGATGTGGCCGTTTTCAACTGTTGGTACTGCGACAACGACGAATGTTGGGAGTAACGGTGGTCATCACGCTGTTCCAATGCCAGCCACGTGGCAGTTCGAGGGTTTAGAGAGCAACGCTGGTGGTGGATTTGTCTCCGGTGAGTACTTTGCGTGGCCGGATCTTTCCATCACAACTCCGGGAAACTCACTCAAATGAGAAAAGCTTCTGTCTTCATCAAAGGGCTTCAAAGTCTCTTCCTTTTTTTAGTCTCTATTGGTGATGTTGATCTCTTAGTTTGTGTCTTGTCAATTTAGAAACTTGTCTTCGGAAACTAGAAAACAGAGAAAGTTTGTGTTTTTTTGGCTCTATGTTCTTAACTTTGGTACTTTCTTCTGCTCTGTTTCGTTTAATTGATTTCG
CDS Sequence
- >AT3G50410.1
ATGCCGACGTCTGACTCCGGTGAACCACGGCGAATAGCTATGAAACCTAACGGCGTAACAGTTCCGATTTCTGACCAGCAAGAACAGCTTCCATGTCCTCGTTGTGACTCATCCAACACTAAGTTCTGTTACTACAACAACTACAACTTCTCTCAGCCTCGTCACTTCTGCAAAGCTTGTCGTCGTTACTGGACTCACGGTGGTACTCTCCGTGACGTTCCTGTCGGTGGTGGTACTCGTAAAAGCGCGAAACGTTCCCGCACTTGCTCGAACTCTTCTTCCTCCTCTGTTTCTGGTGTCGTCTCTAACTCTAACGGTGTTCCGTTACAAACGACGCCTGTTCTCTTCCCTCAGTCGTCAATCTCTAACGGCGTTACTCACACAGTAACTGAAAGCGACGGAAAGGGAAGTGCTTTATCTCTCTGTGGAAGTTTCACCTCCACTCTGTTGAACCATAACGCTGCTGCGACGGCTACGCATGGATCCGGTTCGGTTATTGGTATCGGAGGTTTTGGAATCGGACTCGGGTCGGGTTTTGATGACGTCAGCTTTGGACTCGGAAGAGCGATGTGGCCGTTTTCAACTGTTGGTACTGCGACAACGACGAATGTTGGGAGTAACGGTGGTCATCACGCTGTTCCAATGCCAGCCACGTGGCAGTTCGAGGGTTTAGAGAGCAACGCTGGTGGTGGATTTGTCTCCGGTGAGTACTTTGCGTGGCCGGATCTTTCCATCACAACTCCGGGAAACTCACTCAAATGA
Protein Sequence
- >AT3G50410.1
MPTSDSGEPRRIAMKPNGVTVPISDQQEQLPCPRCDSSNTKFCYYNNYNFSQPRHFCKACRRYWTHGGTLRDVPVGGGTRKSAKRSRTCSNSSSSSVSGVVSNSNGVPLQTTPVLFPQSSISNGVTHTVTESDGKGSALSLCGSFTSTLLNHNAAATATHGSGSVIGIGGFGIGLGSGFDDVSFGLGRAMWPFSTVGTATTTNVGSNGGHHAVPMPATWQFEGLESNAGGGFVSGEYFAWPDLSITTPGNSLK