Information report for AT3G50100
Gene Details
|
|
Functional Descriptions
- GO:0035198 — enables — miRNA binding
- GO:0005737 — located in — cytoplasm
- GO:0005634 — is active in — nucleus
- GO:0004527 — enables — exonuclease activity
- GO:0003676 — enables — nucleic acid binding
- GO:0000175 — enables — 3-5-RNA exonuclease activity
- GO:0005515 — enables — protein binding
- GO:0010587 — acts upstream of or within — miRNA catabolic process
- GO:0044748 — enables — 3-5-exoribonuclease activity involved in mature miRNA 3-end processing GO:0044748 44317 F nuclease activity IDA in vitro binding assay NONE Publication:501781195|PMID:30181559 TAIR 2018-09-18 AT3G50100 locus:2083163 AT3G50100 acts upstream of or within miRNA catabolic process GO:0010587 29498 P other cellular processes IDA Enzyme assays NONE Publication:501728751|PMID:18787168 TAIR 2008-10-03 AT3G50100 locus:2083163 AT3G50100 acts upstream of or within miRNA catabolic process GO:0010587 29498 P other metabolic processes IDA Enzyme assays NONE Publication:501728751|PMID:18787168 TAIR 2008-10-03 AT3G50100 locus:2083163 AT3G50100 enables 3-5-exoribonuclease activity involved in mature miRNA 3-end processing
- GO:0008408 — enables — 3-5 exonuclease activity
Functional Keywords
Literature and News
- AGRONOMICS1: a new resource for Arabidopsis transcriptome profiling. DOI: 10.1104/pp.109.150185 ; PMID: 20032078
- ARGONAUTE10 promotes the degradation of miR165/6 through the SDN1 and SDN2 exonucleases in Arabidopsis. DOI: 10.1371/journal.pbio.2001272 ; PMID: 28231321
- Structural and biochemical insights into small RNA 3' end trimming by Arabidopsis SDN1. DOI: 10.1038/s41467-018-05942-7 ; PMID: 30181559
- Light Triggers the miRNA-Biogenetic Inconsistency for De-etiolated Seedling Survivability in Arabidopsis thaliana. DOI: 10.1016/j.molp.2019.10.011 ; PMID: 31678531
Gene Resources
- UniProt: A0A1I9LRJ2
- EMBL: CP002686
- AlphaFoldDB: A0A1I9LRJ2
- EnsemblPlants: AT3G50100.2
- Gramene: AT3G50100.2
- Orthologous matrix: CHANHLL
- ExpressionAtlas: AT3G50100
- InterPro: IPR012337, IPR012677, IPR013520
- PANTHER: PTHR12801, PTHR12801:SF145
- SUPFAM: SSF53098, SSF54928
- Gene3D: 3.30.420.10, 3.30.70.330
- SWISS-MODEL: A0A1I9LRJ2
- Conserved Domain Database: cd00590, cd06145
Homologs
- Daucus carota DCAR_019583
Sequences
cDNA Sequence
- >AT3G50100.2
CAAAATTCCCACTTTTGTGGAGTCGAATTAGCTTCTCTGTAACTAACCATTCCGTTAAAATAGGTGCTTGACGAGTTGGTGAAGCTATTGCAGAGTCGAGATTTGCGTGGCGAAAATGGAAACTGGAAGGAATTTTTACATGTTTACGACAAAAATGCTGATTCACCAAGTGATCCTTCGAGGCGTTCTCATGAAGATTTGGTTCAGTTTCTGACAACTTTTAAGAAGAAAGAAGATTTGCAACTTCTGAAATGTCACGCCAATCATCTTCTGATTGAAAATTTGAAGCAAGAATCCCAAGATGAAGACACTCCTGAGCAGATGCTAGTTAGATTGACAGTTGAGCATCCGAGTTACTCGTTAGACTATTCTTTCAAGCCATACTCAGAGGACTGGTTTGTATCCGATGTTGGAATGAAGATGAAAAAGGTGATGGAATCAACTAACATGGTAGCTGTTGATTGTGAGATGGTTCTTTGTGAAGATGGGACTGAGGGTTTAGTTAGAGTTGGTGTTGTAGACCGTGATTTAAAGGTGATTCTTGACGAGTTTGTGAAACCGAACAAACCTGTTGTTGACTATAGGACAGACATTACAGGGATTACTGCTGAAGATATCGAAAATGCTAGTCTCTCTGTGGTAGATATACAGGAAACTTTGCAGCCCTTTCTTTCTACGGGTACGATTTTGGTTGGTCACAGTTTAAACAGAGATTTGGAAGTGTTAAAGATAGATCATCCTAAAGTAATCGATACCGCACTTGTATTCAAGTATCCGAATACACGAAAGCTCAGAAGACCTTCACTTAACAACCTTTGCAAGTCTATTTTGGGTTACGAAGTCCGAAAGACCGGTGTTCCTCATGATTGTGTACATGACGCATCAGCTGCGATGAAACTTGCACTTGCTGTTGTAGAGAAAAGAGTTGACACAACAATCAAACCATCTAAAGAGATGTTGGAGGTTGAGAAAGCAAAACTCTTTCTACATAAAATCCCTAACAATGTGCCATCTGAAGAGCTTGAGCAAGTTCTTTCTGGAAAGTTTACACTTGATGTGAAGCAAGCAAAAACACAGGGACGTTACTATTGTGCATTTGCTCTTTTCCATAGTTCAGAAGACGCAGATCAAGCATTTGAACACATTGATGGAATCGAAATGACGGATTCATTGGGTTTGCCACAAAAAGTGGTCATCATTAAGCTGAGTTCAGGATCAAGAGCTAGTATATATGTCCGTAAAATGGTTCAAGATGAATGATGCAACCTAGGATTAGATTAACTATTCAATGAATTGTTTTTTCAGATATTTGAAC - >AT3G50100.1
CAAAATTCCCACTTTTGTGGAGTCGAATTAGCTTCTCTGTAACTAACCATTCCGTTAAAATAGGTGCTTGACGAGTTGGTGAAGCTATTGCAGAGTCGAGATTTGCGTGGCGAAAATGGAAACTGGAAGGAATTTTTACATGTTTACGACAAAAATGCTGATTCACCAAGTGATCCTTCGAGGCGTTCTCATGAAGATTTGGTTCAGTTTCTGACAACTTTTAAGAAGAAAGAAGATTTGCAACTTCTGAAATGTCACGCCAATCATCTTCTGATTGAAAATTTGAAGCAAGAATCCCAAGATGAAGACACTCCTGAGCAGATGCTAGTTAGATTGACAGTTGAGCATCCGAGTTACTCGTTAGACTATTCTTTCAAGCCATACTCAGAGGACTGGTTTGTATCCGATGTTGGAATGAAGATGAAAAAGGTGATGGAATCAACTAACATGGTAGCTGTTGATTGTGAGATGGTTCTTTGTGAAGATGGGACTGAGGGTTTAGTTAGAGTTGGTGTTGTAGACCGTGATTTAAAGGTGATTCTTGACGAGTTTGTGAAACCGAACAAACCTGTTGTTGACTATAGGACAGACATTACAGGGATTACTGCTGAAGATATCGAAAATGCTAGTCTCTCTGTGGTAGATATACAGGAAACTTTGCAGCCCTTTCTTTCTACGGGTACGATTTTGGTTGGTCACAGTTTAAACAGAGATTTGGAAGTGTTAAAGATAGATCATCCTAAAGTAATCGATACCGCACTTGTATTCAAGTATCCGAATACACGAAAGCTCAGAAGACCTTCACTTAACAACCTTTGCAAGTCTATTTTGGGTTACGAAGTCCGAAAGACCGGTGTTCCTCATGATTGTGTACATGACGCATCAGCTGCGATGAAACTTGCACTTGCTGTTGTAGAGAAAAGAGTTGACACAACAATCAAACCATCTAAAGAGATGTTGGAGGTTGAGAAAGCAAAACTCTTTCTACATAAAATCCCTAACAATGTGCCATCTGAAGAGCTTGAGCAAGTTCTTTCTGGAAAGTTTACACTTGATGTGAAGCAAGCAAAAACACAGGGACGTTACTATTGTGCATTTGCTCTTTTCCATAGTTCAGAAGACGCAGATCAAGCATTTGAACACATTGATGGAATCGAAATGACGGATTCATTGGGTTTGCCACAAAAAGTGGTCATCATTAAGCTGAGTTCAGGATCAAGAGCTAGTATATATGTCCGTAAAATGGTTCAAGATGAATGATGCAACCTAGGATTAGATTAACTATTCAATGAATTGTTTTTTCAGATATTTGAAC
CDS Sequence
- >AT3G50100.2
ATGCTAGTTAGATTGACAGTTGAGCATCCGAGTTACTCGTTAGACTATTCTTTCAAGCCATACTCAGAGGACTGGTTTGTATCCGATGTTGGAATGAAGATGAAAAAGGTGATGGAATCAACTAACATGGTAGCTGTTGATTGTGAGATGGTTCTTTGTGAAGATGGGACTGAGGGTTTAGTTAGAGTTGGTGTTGTAGACCGTGATTTAAAGGTGATTCTTGACGAGTTTGTGAAACCGAACAAACCTGTTGTTGACTATAGGACAGACATTACAGGGATTACTGCTGAAGATATCGAAAATGCTAGTCTCTCTGTGGTAGATATACAGGAAACTTTGCAGCCCTTTCTTTCTACGGGTACGATTTTGGTTGGTCACAGTTTAAACAGAGATTTGGAAGTGTTAAAGATAGATCATCCTAAAGTAATCGATACCGCACTTGTATTCAAGTATCCGAATACACGAAAGCTCAGAAGACCTTCACTTAACAACCTTTGCAAGTCTATTTTGGGTTACGAAGTCCGAAAGACCGGTGTTCCTCATGATTGTGTACATGACGCATCAGCTGCGATGAAACTTGCACTTGCTGTTGTAGAGAAAAGAGTTGACACAACAATCAAACCATCTAAAGAGATGTTGGAGGTTGAGAAAGCAAAACTCTTTCTACATAAAATCCCTAACAATGTGCCATCTGAAGAGCTTGAGCAAGTTCTTTCTGGAAAGTTTACACTTGATGTGAAGCAAGCAAAAACACAGGGACGTTACTATTGTGCATTTGCTCTTTTCCATAGTTCAGAAGACGCAGATCAAGCATTTGAACACATTGATGGAATCGAAATGACGGATTCATTGGGTTTGCCACAAAAAGTGGTCATCATTAAGCTGAGTTCAGGATCAAGAGCTAGTATATATGTCCGTAAAATGGTTCAAGATGAATGA - >AT3G50100.1
ATGCTAGTTAGATTGACAGTTGAGCATCCGAGTTACTCGTTAGACTATTCTTTCAAGCCATACTCAGAGGACTGGTTTGTATCCGATGTTGGAATGAAGATGAAAAAGGTGATGGAATCAACTAACATGGTAGCTGTTGATTGTGAGATGGTTCTTTGTGAAGATGGGACTGAGGGTTTAGTTAGAGTTGGTGTTGTAGACCGTGATTTAAAGGTGATTCTTGACGAGTTTGTGAAACCGAACAAACCTGTTGTTGACTATAGGACAGACATTACAGGGATTACTGCTGAAGATATCGAAAATGCTAGTCTCTCTGTGGTAGATATACAGGAAACTTTGCAGCCCTTTCTTTCTACGGGTACGATTTTGGTTGGTCACAGTTTAAACAGAGATTTGGAAGTGTTAAAGATAGATCATCCTAAAGTAATCGATACCGCACTTGTATTCAAGTATCCGAATACACGAAAGCTCAGAAGACCTTCACTTAACAACCTTTGCAAGTCTATTTTGGGTTACGAAGTCCGAAAGACCGGTGTTCCTCATGATTGTGTACATGACGCATCAGCTGCGATGAAACTTGCACTTGCTGTTGTAGAGAAAAGAGTTGACACAACAATCAAACCATCTAAAGAGATGTTGGAGGTTGAGAAAGCAAAACTCTTTCTACATAAAATCCCTAACAATGTGCCATCTGAAGAGCTTGAGCAAGTTCTTTCTGGAAAGTTTACACTTGATGTGAAGCAAGCAAAAACACAGGGACGTTACTATTGTGCATTTGCTCTTTTCCATAGTTCAGAAGACGCAGATCAAGCATTTGAACACATTGATGGAATCGAAATGACGGATTCATTGGGTTTGCCACAAAAAGTGGTCATCATTAAGCTGAGTTCAGGATCAAGAGCTAGTATATATGTCCGTAAAATGGTTCAAGATGAATGA
Protein Sequence
- >AT3G50100.2
MLVRLTVEHPSYSLDYSFKPYSEDWFVSDVGMKMKKVMESTNMVAVDCEMVLCEDGTEGLVRVGVVDRDLKVILDEFVKPNKPVVDYRTDITGITAEDIENASLSVVDIQETLQPFLSTGTILVGHSLNRDLEVLKIDHPKVIDTALVFKYPNTRKLRRPSLNNLCKSILGYEVRKTGVPHDCVHDASAAMKLALAVVEKRVDTTIKPSKEMLEVEKAKLFLHKIPNNVPSEELEQVLSGKFTLDVKQAKTQGRYYCAFALFHSSEDADQAFEHIDGIEMTDSLGLPQKVVIIKLSSGSRASIYVRKMVQDE - >AT3G50100.1
MLVRLTVEHPSYSLDYSFKPYSEDWFVSDVGMKMKKVMESTNMVAVDCEMVLCEDGTEGLVRVGVVDRDLKVILDEFVKPNKPVVDYRTDITGITAEDIENASLSVVDIQETLQPFLSTGTILVGHSLNRDLEVLKIDHPKVIDTALVFKYPNTRKLRRPSLNNLCKSILGYEVRKTGVPHDCVHDASAAMKLALAVVEKRVDTTIKPSKEMLEVEKAKLFLHKIPNNVPSEELEQVLSGKFTLDVKQAKTQGRYYCAFALFHSSEDADQAFEHIDGIEMTDSLGLPQKVVIIKLSSGSRASIYVRKMVQDE