Information report for AT3G50070
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0000017 — vascular leaf primordium — leaf primordium (exact), portion of vascular leaf primordium tissue (exact), primordio de hoja (Spanish, exact), vascular leaf primordia (exact, plural), 葉原基 (Japanese, exact)
- PO:0005052 — plant callus — callo (Spanish, exact), portion of plant callus tissue (exact), 植物カルス (Japanese, exact), callus (broad)
- GO:0005634 — located in — nucleus
- GO:0010444 — involved in — guard mother cell differentiation
- GO:0005634 — is active in — nucleus
- GO:0005515 — enables — protein binding
- GO:0000079 — involved in — regulation of cyclin-dependent protein serine/threonine kinase activity
- GO:0000307 — part of — cyclin-dependent protein kinase holoenzyme complex
- GO:0016538 — enables — cyclin-dependent protein serine/threonine kinase regulator activity
- GO:0005737 — is active in — cytoplasm
- GO:0048316 — acts upstream of or within — seed development
- GO:0044772 — involved in — mitotic cell cycle phase transition
- GO:0042127 — acts upstream of or within — regulation of cell population proliferation
Functional Keywords
Literature and News
- Genome-wide analysis of core cell cycle genes in Arabidopsis. DOI: 10.1105/tpc.010445 ; PMID: 11971144
- Rapid identification of Arabidopsis insertion mutants by non-radioactive detection of T-DNA tagged genes. DOI: 10.1046/j.1365-313x.2002.01416.x ; PMID: 12383089
- A CDC45 homolog in Arabidopsis is essential for meiosis, as shown by RNA interference-induced gene silencing. DOI: 10.1105/tpc.016865 ; PMID: 14660803
- The Arabidopsis transcription factor HY5 integrates light and hormone signaling pathways. DOI: 10.1111/j.1365-313X.2004.02052.x ; PMID: 15078335
- Gene family analysis of the Arabidopsis pollen transcriptome reveals biological implications for cell growth, division control, and gene expression regulation. DOI: 10.1104/pp.104.057935 ; PMID: 15908605
- The evolutionarily conserved TOUGH protein is required for proper development of Arabidopsis thaliana. DOI: 10.1105/tpc.105.031302 ; PMID: 16024589
- A transcriptome-based characterization of habituation in plant tissue culture. DOI: 10.1104/pp.105.076059 ; PMID: 16489130
- BOLITA, an Arabidopsis AP2/ERF-like transcription factor that affects cell expansion and proliferation/differentiation pathways. DOI: 10.1007/s11103-006-9059-1 ; PMID: 17096212
- Genomic organization and evolutionary conservation of plant D-type cyclins. DOI: 10.1104/pp.107.104901 ; PMID: 17951462
- Transcriptome analysis of proliferating Arabidopsis endosperm reveals biological implications for the control of syncytial division, cytokinin signaling, and gene expression regulation. DOI: 10.1104/pp.108.128108 ; PMID: 18923020
- Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. DOI: 10.1038/msb.2010.53 ; PMID: 20706207
- A genome-wide transcriptome profiling reveals the early molecular events during callus initiation in Arabidopsis multiple organs. DOI: 10.1016/j.ygeno.2012.05.013 ; PMID: 22664253
- EBE, an AP2/ERF transcription factor highly expressed in proliferating cells, affects shoot architecture in Arabidopsis. DOI: 10.1104/pp.113.214049 ; PMID: 23616605
- WOX5 suppresses CYCLIN D activity to establish quiescence at the center of the root stem cell niche. DOI: 10.1016/j.cub.2014.07.019 ; PMID: 25127220
- Arabidopsis PCNAs form complexes with selected D-type cyclins. DOI: 10.3389/fpls.2015.00516 ; PMID: 26379676
- Ectopic expression of TAPETUM DETERMINANT1 affects ovule development in Arabidopsis. DOI: 10.1093/jxb/erv523 ; PMID: 26685185
- Wounding Triggers Callus Formation via Dynamic Hormonal and Transcriptional Changes. DOI: 10.1104/pp.17.01035 ; PMID: 28904073
- Cell division and turgor mediate enhanced plant growth in Arabidopsis plants treated with the bacterial signalling molecule lumichrome. DOI: 10.1007/s00425-018-2916-8 ; PMID: 29777364
- Cytokinin regulates female gametophyte development by cell cycle modulation in Arabidopsis thaliana. DOI: 10.1016/j.plantsci.2022.111419 ; PMID: 35995110
- Global analysis of the core cell cycle regulators of Arabidopsis identifies novel genes, reveals multiple and highly specific profiles of expression and provides a coherent model for plant cell cycle control. DOI: 10.1111/j.1365-313X.2004.02319.x ; PMID: 15686519
- D-type cyclins activate division in the root apex to promote seed germination in Arabidopsis. DOI: 10.1073/pnas.0507581102 ; PMID: 16227434
- The DOF transcription factor OBP1 is involved in cell cycle regulation in Arabidopsis thaliana. DOI: 10.1111/j.1365-313X.2008.03641.x ; PMID: 18665917
Gene Resources
- UniProt: A0A178VE15
- EMBL: CACRSJ010000106, CACSHJ010000089, LUHQ01000003
- AlphaFoldDB: A0A178VE15
- EnsemblPlants: AT3G50070.1
- Gramene: AT3G50070.1
- KEGG: ath:AT3G50070
- Orthologous matrix: RYSFKSH
- ExpressionAtlas: AT3G50070
- InterPro: IPR004367, IPR006671, IPR013763
- PANTHER: PTHR10177
- SUPFAM: SSF47954
- PROSITE: PS00292
- Gene3D: 1.10.472.10
- OrthoDB: A0A178VE15
- SWISS-MODEL: A0A178VE15
- Conserved Domain Database: cd20543, cd20544
Homologs
- Capsicum annuum T459_28212
- Malus domestica MDP0000288143
- Oryza sativa OsCYCD3;1, cycOs1, cycOs2
- Zea mays GRMZM2G546369_P01
Sequences
cDNA Sequence
- >AT3G50070.1
AAAAAGAGGACAAGCGTGAAATAAAACCCTTCACTTTCTTTGGCATTTGTCTTCACTTCTTTTATCTCTCTTTCTATCTCACACAGAGTGAAGAATCCAGAGAGTCTCTAATGGCAGAATGAACAAAGGAATTAGCAATCATCTTCTTCTCGGAAGAGAAAAATCATGGCTTTAGAAGAGGAGGAAGAGAGTCAAAACGCACCGTTTTGTGTTCTTGATGGTCTTTTCTGTGAGGAAGAGAGTGAGTTTCACGAACAAGTAGATTTGTGCGACGAGAGTGTTGAAAAGTTTCCTTTTTTAAATCTGGGTTTGTCTGATCATGATATGTTGTGGGATGATGATGAGTTATCAACTTTGATTTCGAAACAAGAACCGTGTCTTTATGACGAAATCTTAGATGATGAGTTTCTGGTTTTGTGTCGTGAAAAGGCTCTTGATTGGATTTTTAAAGTGAAATCTCATTATGGGTTTAATTCATTGACGGCTCTTTTAGCTGTTAATTACTTCGATAGGTTTATTACAAGCAGGAAGTTTCAGACAGATAAGCCATGGATGTCTCAGCTTACTGCTTTGGCTTGTCTGTCTTTAGCTGCTAAGGTTGAAGAGATCCGTGTTCCTTTTCTCTTAGATTTTCAAGTGGAAGAAGCAAGATATGTCTTTGAAGCTAAGACTATACAGAGAATGGAGCTTCTTGTTCTGTCTACTCTTGACTGGAGGATGCATCCTGTGACTCCAATCTCGTTTTTCGATCACATTATTCGACGATACAGCTTTAAATCTCATCATCAATTGGAGTTCTTGAGTAGATGTGAATCTTTATTACTCTCCATTATTCCTGATTCGAGATTTCTGAGTTTTAGTCCTTCTGTGTTAGCCACTGCAATAATGGTCTCTGTTATTAGAGATTTGAAGATGTGTGACGAAGCTGTATACCAATCTCAGCTCATGACTCTACTCAAAGTTGATTCGGAGAAGGTAAATAAATGCTATGAGTTAGTGTTAGACCACAGTCCAAGCAAGAAAAGGATGATGAATTGGATGCAACAACCCGCTAGTCCGATCGGTGTGTTTGATGCGTCATTCAGTTCTGATAGCTCGAATGAGTCGTGGGTTGTGTCTGCTTCTGCTTCAGTGTCGTCTTCACCATCTTCAGAGCCTTTGCTCAAGAGGAGAAGAGTGCAAGAGCAGCAGATGAGGCTATCTTCAATAAACCGAATGTTTTTCGATGTGCTTAGTAGTAGTCCTCGCTAATAATGTCAACAACCCATCAAAATGTGTCGGTTTAGTTACCTAAAATCTGTTTCCATGTTTTACATATTATCGGCTATATGGTTCTCGGTTCTTGTGTTTATGGACGGTTGCAAATGGTGTACGTTTCGTTATTTGATATTCTAAAAACAAAGTTCTTTTACATTAAAAGTTTCCGCTGGATCTTACCT
CDS Sequence
- >AT3G50070.1
ATGGCTTTAGAAGAGGAGGAAGAGAGTCAAAACGCACCGTTTTGTGTTCTTGATGGTCTTTTCTGTGAGGAAGAGAGTGAGTTTCACGAACAAGTAGATTTGTGCGACGAGAGTGTTGAAAAGTTTCCTTTTTTAAATCTGGGTTTGTCTGATCATGATATGTTGTGGGATGATGATGAGTTATCAACTTTGATTTCGAAACAAGAACCGTGTCTTTATGACGAAATCTTAGATGATGAGTTTCTGGTTTTGTGTCGTGAAAAGGCTCTTGATTGGATTTTTAAAGTGAAATCTCATTATGGGTTTAATTCATTGACGGCTCTTTTAGCTGTTAATTACTTCGATAGGTTTATTACAAGCAGGAAGTTTCAGACAGATAAGCCATGGATGTCTCAGCTTACTGCTTTGGCTTGTCTGTCTTTAGCTGCTAAGGTTGAAGAGATCCGTGTTCCTTTTCTCTTAGATTTTCAAGTGGAAGAAGCAAGATATGTCTTTGAAGCTAAGACTATACAGAGAATGGAGCTTCTTGTTCTGTCTACTCTTGACTGGAGGATGCATCCTGTGACTCCAATCTCGTTTTTCGATCACATTATTCGACGATACAGCTTTAAATCTCATCATCAATTGGAGTTCTTGAGTAGATGTGAATCTTTATTACTCTCCATTATTCCTGATTCGAGATTTCTGAGTTTTAGTCCTTCTGTGTTAGCCACTGCAATAATGGTCTCTGTTATTAGAGATTTGAAGATGTGTGACGAAGCTGTATACCAATCTCAGCTCATGACTCTACTCAAAGTTGATTCGGAGAAGGTAAATAAATGCTATGAGTTAGTGTTAGACCACAGTCCAAGCAAGAAAAGGATGATGAATTGGATGCAACAACCCGCTAGTCCGATCGGTGTGTTTGATGCGTCATTCAGTTCTGATAGCTCGAATGAGTCGTGGGTTGTGTCTGCTTCTGCTTCAGTGTCGTCTTCACCATCTTCAGAGCCTTTGCTCAAGAGGAGAAGAGTGCAAGAGCAGCAGATGAGGCTATCTTCAATAAACCGAATGTTTTTCGATGTGCTTAGTAGTAGTCCTCGCTAA
Protein Sequence
- >AT3G50070.1
MALEEEEESQNAPFCVLDGLFCEEESEFHEQVDLCDESVEKFPFLNLGLSDHDMLWDDDELSTLISKQEPCLYDEILDDEFLVLCREKALDWIFKVKSHYGFNSLTALLAVNYFDRFITSRKFQTDKPWMSQLTALACLSLAAKVEEIRVPFLLDFQVEEARYVFEAKTIQRMELLVLSTLDWRMHPVTPISFFDHIIRRYSFKSHHQLEFLSRCESLLLSIIPDSRFLSFSPSVLATAIMVSVIRDLKMCDEAVYQSQLMTLLKVDSEKVNKCYELVLDHSPSKKRMMNWMQQPASPIGVFDASFSSDSSNESWVVSASASVSSSPSSEPLLKRRRVQEQQMRLSSINRMFFDVLSSSPR