Information report for AT3G49690
Gene Details
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Functional Descriptions
- PO:0006203 — pericycle — periciclo (Spanish, exact), portion of pericycle tissue (exact), portion of pericyclic tissue (exact), 内鞘 (Japanese, exact)
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- GO:0009414 — acts upstream of or within — response to water deprivation
- GO:0005634 — located in — nucleus
- GO:0019438 — acts upstream of or within — aromatic compound biosynthetic process
- GO:0009737 — acts upstream of or within — response to abscisic acid
- GO:0009699 — acts upstream of or within — phenylpropanoid biosynthetic process
- GO:1901362 — acts upstream of or within — organic cyclic compound biosynthetic process
- GO:0006952 — acts upstream of or within — defense response
- GO:0003700 — enables — DNA-binding transcription factor activity
- GO:0006970 — acts upstream of or within — response to osmotic stress
Functional Keywords
- pericycle , shoot axis apex , root , plant embryo , vascular leaf , stamen , sepal , flower , hypocotyl , collective leaf structure
Literature and News
- Towards functional characterisation of the members of the R2R3-MYB gene family from Arabidopsis thaliana. DOI: 10.1046/j.1365-313x.1998.00278.x ; PMID: 9839469
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- The R2R3-MYB gene family in Arabidopsis thaliana. DOI: 10.1016/s1369-5266(00)00199-0 ; PMID: 11597504
- Generation of Arabidopsis protein chips for antibody and serum screening. DOI: 10.1023/a:1025424814739 ; PMID: 14558660
- Comparison of lignin deposition in three ectopic lignification mutants. DOI: 10.1111/j.1469-8137.2005.01496.x ; PMID: 16159327
- The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family. DOI: 10.1007/s11103-005-2910-y ; PMID: 16463103
- Blind homologous R2R3 Myb genes control the pattern of lateral meristem initiation in Arabidopsis. DOI: 10.1105/tpc.105.038745 ; PMID: 16461581
- The genetic architecture of shoot branching in Arabidopsis thaliana: a comparative assessment of candidate gene associations vs. quantitative trait locus mapping. DOI: 10.1534/genetics.107.071928 ; PMID: 17435248
- CaBLIND regulates axillary meristem initiation and transition to flowering in pepper. DOI: 10.1007/s00425-011-1479-8 ; PMID: 21773792
- The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis. DOI: 10.1105/tpc.15.00829 ; PMID: 26578700
- TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation. DOI: 10.1104/pp.17.00568 ; PMID: 28827455
- Uridylation and the SKI complex orchestrate the Calvin cycle of photosynthesis through RNA surveillance of TKL1 in Arabidopsis. DOI: 10.1073/pnas.2205842119 ; PMID: 36095196
- Towards functional characterisation of the members of the R2R3-MYB gene family from Arabidopsis thaliana. DOI: 10.1046/j.1365-313x.1998.00278.x ; PMID: 9839469
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- The R2R3-MYB gene family in Arabidopsis thaliana. DOI: 10.1016/s1369-5266(00)00199-0 ; PMID: 11597504
- Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. DOI: 10.1093/molbev/msj051 ; PMID: 16280546
- The MYB transcription factor superfamily of Arabidopsis: expression analysis and phylogenetic comparison with the rice MYB family. DOI: 10.1007/s11103-005-2910-y ; PMID: 16463103
Gene Resources
- UniProt: A0A178VK29
- EMBL: CACSHJ010000089, LUHQ01000003
- AlphaFoldDB: A0A178VK29
- EnsemblPlants: AT3G49690.1
- Gramene: AT3G49690.1
- KEGG: ath:AT3G49690
- Orthologous matrix: QEMMVMM
- ExpressionAtlas: AT3G49690
- InterPro: IPR001005, IPR009057, IPR017930
- PANTHER: PTHR48000, PTHR48000:SF63
- SUPFAM: SSF46689
- PROSITE: PS50090, PS51294
- Gene3D: 1.10.10.60
- OrthoDB: A0A178VK29
- SWISS-MODEL: A0A178VK29
- Conserved Domain Database: cd00167
Homologs
- Brassica napus GSBRNA2T00125457001, GSBRNA2T00047986001, GSBRNA2T00007238001, GSBRNA2T00064794001
- Brassica oleracea XP_013603272.1, XP_013619219.1, XP_013626384.1
- Brassica rapa XP_009149711.1, XP_009149710.1, XP_009130527.1
- Raphanus raphanistrum RrC5270_p1
Sequences
cDNA Sequence
- >AT3G49690.1
ATCTTTTCTTACAAAGACTTTTTGACATCTCCCCCTCCAGCTATTATATAGTCTCCTTTTTTCTTTTCTGCATTCACATAATATTTCCCCTATATAGTTTACACAACATCATACCCACCAACATATATAATCTTGATCATAGAGAGATAAACAGAGGCCGCTATCAAGAACAAGACTAAGAACAAGACTTCACTAGGAGTACAAGTATGGGAAGAGCACCGTGTTGTGACAAAGCAAACGTGAAGAAAGGGCCTTGGTCTCCTGAGGAAGATGCAAAACTCAAATCTTACATTGAAAATAGTGGCACCGGAGGCAATTGGATCGCTTTGCCTCAAAAGATTGGTTTAAAGAGATGTGGAAAGAGTTGCAGGCTGAGGTGGCTTAACTATCTTAGACCAAACATCAAACATGGTGGCTTCTCTGAGGAAGAAGAAAACATCATTTGTAGCCTTTACCTTACAATTGGTAGCAGGTGGTCTATAATCGCTGCTCAATTGCCGGGACGAACAGACAACGATATAAAAAACTATTGGAACACGAGGCTCAAGAAGAAACTCATTAACAAACAACGCAAGGAGCTTCAAGAAGCTTGTATGGAGCAGCAAGAGATGATGGTGATGATGAAGAGACAACACCAACAACAACAAATCCAAACTTCTTTTATGATGAGACAAGACCAAACAATGTTCACATGGCCACTACATCATCATAATGTTCAAGTTCCAGCTCTTTTCATGAATCAAACCAACTCGTTTTGCGACCAAGAAGATGTTAAGCCAGTGCTCATCAAGAACATGGTCAAGATCGAAGATCAAGAACTGGAGAAAACAAACCCTCATCATCATCAAGATTCAATGACAAACGCTTTTGATCATCTCTCTTTCTCTCAACTCTTGTTAGATCCTAATCATAACCACTTAGGATCAGGCGAGGGTTTCTCCATGAACTCTATCTTGAGCGCCAACACAAACTCTCCATTGCTTAATACAAGTAATGATAATCAGTGGTTCGGGAATTTCCAGGCCGAAACCGTAAACTTGTTCTCAGGAGCCTCCACAAGTACTTCGGCAGATCAAAGCACTATAAGTTGGGAAGACATAAGCTCTCTTGTTTATTCTGATTCAAAGCAATTTTTTTAATTATAATAATATATTATTCTTAAGATGAAACGTACATCATTATTATTAATTGGGGGTACGTAACGTATATATGGAATAACGATCTAGTTTGTTTAAATTTATTGATATCTCATATATCTGGATTTGAAATTAACTCTAATATGCAGAAGTATGAACTCATATGCGAAAGATCCTAGCGAAG
CDS Sequence
- >AT3G49690.1
ATGGGAAGAGCACCGTGTTGTGACAAAGCAAACGTGAAGAAAGGGCCTTGGTCTCCTGAGGAAGATGCAAAACTCAAATCTTACATTGAAAATAGTGGCACCGGAGGCAATTGGATCGCTTTGCCTCAAAAGATTGGTTTAAAGAGATGTGGAAAGAGTTGCAGGCTGAGGTGGCTTAACTATCTTAGACCAAACATCAAACATGGTGGCTTCTCTGAGGAAGAAGAAAACATCATTTGTAGCCTTTACCTTACAATTGGTAGCAGGTGGTCTATAATCGCTGCTCAATTGCCGGGACGAACAGACAACGATATAAAAAACTATTGGAACACGAGGCTCAAGAAGAAACTCATTAACAAACAACGCAAGGAGCTTCAAGAAGCTTGTATGGAGCAGCAAGAGATGATGGTGATGATGAAGAGACAACACCAACAACAACAAATCCAAACTTCTTTTATGATGAGACAAGACCAAACAATGTTCACATGGCCACTACATCATCATAATGTTCAAGTTCCAGCTCTTTTCATGAATCAAACCAACTCGTTTTGCGACCAAGAAGATGTTAAGCCAGTGCTCATCAAGAACATGGTCAAGATCGAAGATCAAGAACTGGAGAAAACAAACCCTCATCATCATCAAGATTCAATGACAAACGCTTTTGATCATCTCTCTTTCTCTCAACTCTTGTTAGATCCTAATCATAACCACTTAGGATCAGGCGAGGGTTTCTCCATGAACTCTATCTTGAGCGCCAACACAAACTCTCCATTGCTTAATACAAGTAATGATAATCAGTGGTTCGGGAATTTCCAGGCCGAAACCGTAAACTTGTTCTCAGGAGCCTCCACAAGTACTTCGGCAGATCAAAGCACTATAAGTTGGGAAGACATAAGCTCTCTTGTTTATTCTGATTCAAAGCAATTTTTTTAA
Protein Sequence
- >AT3G49690.1
MGRAPCCDKANVKKGPWSPEEDAKLKSYIENSGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEENIICSLYLTIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLINKQRKELQEACMEQQEMMVMMKRQHQQQQIQTSFMMRQDQTMFTWPLHHHNVQVPALFMNQTNSFCDQEDVKPVLIKNMVKIEDQELEKTNPHHHQDSMTNAFDHLSFSQLLLDPNHNHLGSGEGFSMNSILSANTNSPLLNTSNDNQWFGNFQAETVNLFSGASTSTSADQSTISWEDISSLVYSDSKQFF