Information report for AT3G49660
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- GO:0042393 — enables — histone binding
- GO:0010228 — acts upstream of or within — vegetative to reproductive phase transition of meristem
- GO:0005634 — located in — nucleus
- GO:0051568 — involved in — histone H3-K4 methylation
- GO:0048188 — part of — Set1C/COMPASS complex
- GO:0005515 — enables — protein binding
- Wdr5a — great reduction of H3K4me3 level at MAF4 and impaired cold-induced MAF4 expression
Functional Keywords
Literature and News
- and phyA-mediated responses of germination in Arabidopsis. DOI: 10.1046/j.1365-313x.2003.01848.x ; PMID: 12969431
- Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. DOI: 10.1074/jbc.M308435200 ; PMID: 14576160
- ABA activates ADPR cyclase and cADPR induces a subset of ABA-responsive genes in Arabidopsis. DOI: 10.1111/j.1365-313X.2004.02055.x ; PMID: 15086800
- A chloroplast-localized vesicular transport system: a bio-informatics approach. DOI: 10.1186/1471-2164-5-40 ; PMID: 15236667
- Combinatorial microarray analysis revealing arabidopsis genes implicated in cytokinin responses through the His->Asp Phosphorelay circuitry. DOI: 10.1093/pcp/pci033 ; PMID: 15695462
- Non conservation of the meiotic function of the Ski8/Rec103 homolog in Arabidopsis. DOI: 10.1111/j.1365-2443.2006.00972.x ; PMID: 16716192
- Arabidopsis COMPASS-like complexes mediate histone H3 lysine-4 trimethylation to control floral transition and plant development. DOI: 10.1371/journal.pgen.1001330 ; PMID: 21423667
- Analysis of essential Arabidopsis nuclear genes encoding plastid-targeted proteins. DOI: 10.1371/journal.pone.0073291 ; PMID: 24023856
- Transcription factor interaction with COMPASS-like complex regulates histone H3K4 trimethylation for specific gene expression in plants. DOI: 10.1073/pnas.1419703112 ; PMID: 25730865
- WD40-REPEAT 5a represses root meristem growth by suppressing auxin synthesis through changes of nitric oxide accumulation in Arabidopsis. DOI: 10.1111/tpj.13816 ; PMID: 29315929
- WDR5a functions in cadmium-inhibited root meristem growth by regulating nitric oxide accumulation in Arabidopsis. DOI: 10.1007/s00425-020-03486-z ; PMID: 33033954
- COMPASS functions as a module of the INO80 chromatin remodeling complex to mediate histone H3K4 methylation in Arabidopsis. DOI: 10.1093/plcell/koab187 ; PMID: 34270751
- The Arabidopsis DREAM complex antagonizes WDR5A to modulate histone H3K4me2/3 deposition for a subset of genome repression. DOI: 10.1073/pnas.2206075119 ; PMID: 35759663
Gene Resources
- UniProt: A0A178VK59
- EMBL: CACRSJ010000106, CACSHJ010000089, LUHQ01000003
- AlphaFoldDB: A0A178VK59
- EnsemblPlants: AT3G49660.1
- Gramene: AT3G49660.1
- KEGG: ath:AT3G49660
- Orthologous matrix: CKGHDTA
- ExpressionAtlas: AT3G49660
- InterPro: IPR001680, IPR015943, IPR019775
- PANTHER: PTHR22847, PTHR22847:SF637
- SUPFAM: SSF50978
- PROSITE: PS00678, PS50082, PS50294
- Gene3D: 2.130.10.10
- OrthoDB: A0A178VK59
- SWISS-MODEL: A0A178VK59
- Conserved Domain Database: cd00200
Homologs
- Brassica napus BnaA06G0270700ZS, BnaC03G0562300ZS
- Brassica oleracea Bo3g109400
- Brassica rapa Bra019610
- Citrullus lanatus Cla97C01G017310
- Cucumis melo MELO3C007681
- Cucumis sativus CsGy6G028950
- Glycine max Glyma.07G248900
- Gossypium hirsutum Gohir.D11G212900, Gohir.A11G210200
- Juglans regia Jr11_05460
- Manihot esculenta MANES_12G119800
- Medicago truncatula Medtr4g119620
- Populus trichocarpa POPTR_005G148500v3
Sequences
cDNA Sequence
- >AT3G49660.1
ATTTATTTAAAAGAGTCGGGGTTTTTCCAAGAACACTGGATCGTCGTCTCTCTCCTTTAGTTAGACAAAGCCTCCTTTCCCAAAACCCTAAAATCAGCCAAATTCAAATTCCGCTAACCAATTTCCATGGCAGAGGAAATTCCAGCAACAGCATCATTCACTCCATACGTCCATTCACAAACTCTAACATCTCACAATCGCGCCGTCTCCTCCGTGAAATTCTCCTCCGATGGACGTCTCCTCGCATCCGCCTCCGCCGACAAAACAATCCGCACTTACACAATCAACACCATTAACGATCCAATCGCCGAGCCCGTACAAGAATTCACCGGCCATGAAAACGGTATCTCCGATGTTGCATTCTCTTCAGACGCGAGGTTTATAGTCTCAGCTTCCGATGACAAAACCTTAAAGCTATGGGACGTTGAAACTGGTTCATTGATCAAGACGCTTATTGGACACACTAATTACGCCTTCTGTGTCAATTTCAATCCTCAATCAAATATGATTGTATCTGGTTCGTTTGATGAAACTGTTCGGATCTGGGATGTCACTACTGGAAAGTGTTTGAAAGTTCTTCCCGCGCATTCTGATCCTGTTACTGCTGTTGATTTTAATAGAGATGGGTCTCTCATTGTTTCGAGTAGCTATGATGGGTTGTGTCGTATATGGGATTCTGGGACTGGTCATTGTGTGAAAACTCTGATTGATGATGAGAATCCTCCTGTTTCGTTTGTTAGATTCTCTCCTAATGGCAAGTTTATCCTCGTTGGTACACTTGATAACACGCTGAGGTTGTGGAACATTTCGTCTGCTAAGTTCCTCAAAACATACACTGGCCACGTGAACGCACAGTATTGCATTTCCTCTGCGTTCTCCGTCACAAATGGAAAGCGAATAGTCAGTGGATCCGAGGACAACTGTGTACACATGTGGGAGCTAAACTCCAAGAAACTGCTACAGAAACTTGAGGGTCATACTGAGACCGTCATGAACGTAGCATGCCACCCGACAGAGAACTTGATCGCATCAGGCTCGCTCGACAAGACAGTAAGGATTTGGACACAGAAGAAAGAATAAATCATCACTCTCTCTCTTCAGAAATCAAACATGTAGGTACATGCCACCTTCTTCATGCAGTAATCATCTGTTGCTTACTAAGCTTGTTAGATTGATTCTAGCCTCATTATGTAAAAGTCTAATTTTTGTTTGGTGTAAGGGAAGTGCAACAGACTGTTCTAAACTTGTAATAGTTCTCTGTGTGACTCAGAACTATTTAGGTAGGTCTTAAGGCAAAGACTCCTGCAAGTGCAAAGGCATTTGAGAGAATGAACACAAATCTTCATAGGTTTACCCTTTACTCATTGTATCTATTAAGCTGATGCAATGCTTCACCAATACTATTGGTTATAAAGTAGTTTCAGGATTGAAAATTGTTCATCTGAACCATATTGATGGGTGGCTCATGGGTCAAAGTACAGATATATGACTATAAGTAGATAATGTATGGTAGTTGGTTACTTTGGTTGGCCATGATGATGAAGCTTATGGTCCCCTGGTCCTGTCCCAT
CDS Sequence
- >AT3G49660.1
ATGGCAGAGGAAATTCCAGCAACAGCATCATTCACTCCATACGTCCATTCACAAACTCTAACATCTCACAATCGCGCCGTCTCCTCCGTGAAATTCTCCTCCGATGGACGTCTCCTCGCATCCGCCTCCGCCGACAAAACAATCCGCACTTACACAATCAACACCATTAACGATCCAATCGCCGAGCCCGTACAAGAATTCACCGGCCATGAAAACGGTATCTCCGATGTTGCATTCTCTTCAGACGCGAGGTTTATAGTCTCAGCTTCCGATGACAAAACCTTAAAGCTATGGGACGTTGAAACTGGTTCATTGATCAAGACGCTTATTGGACACACTAATTACGCCTTCTGTGTCAATTTCAATCCTCAATCAAATATGATTGTATCTGGTTCGTTTGATGAAACTGTTCGGATCTGGGATGTCACTACTGGAAAGTGTTTGAAAGTTCTTCCCGCGCATTCTGATCCTGTTACTGCTGTTGATTTTAATAGAGATGGGTCTCTCATTGTTTCGAGTAGCTATGATGGGTTGTGTCGTATATGGGATTCTGGGACTGGTCATTGTGTGAAAACTCTGATTGATGATGAGAATCCTCCTGTTTCGTTTGTTAGATTCTCTCCTAATGGCAAGTTTATCCTCGTTGGTACACTTGATAACACGCTGAGGTTGTGGAACATTTCGTCTGCTAAGTTCCTCAAAACATACACTGGCCACGTGAACGCACAGTATTGCATTTCCTCTGCGTTCTCCGTCACAAATGGAAAGCGAATAGTCAGTGGATCCGAGGACAACTGTGTACACATGTGGGAGCTAAACTCCAAGAAACTGCTACAGAAACTTGAGGGTCATACTGAGACCGTCATGAACGTAGCATGCCACCCGACAGAGAACTTGATCGCATCAGGCTCGCTCGACAAGACAGTAAGGATTTGGACACAGAAGAAAGAATAA
Protein Sequence
- >AT3G49660.1
MAEEIPATASFTPYVHSQTLTSHNRAVSSVKFSSDGRLLASASADKTIRTYTINTINDPIAEPVQEFTGHENGISDVAFSSDARFIVSASDDKTLKLWDVETGSLIKTLIGHTNYAFCVNFNPQSNMIVSGSFDETVRIWDVTTGKCLKVLPAHSDPVTAVDFNRDGSLIVSSSYDGLCRIWDSGTGHCVKTLIDDENPPVSFVRFSPNGKFILVGTLDNTLRLWNISSAKFLKTYTGHVNAQYCISSAFSVTNGKRIVSGSEDNCVHMWELNSKKLLQKLEGHTETVMNVACHPTENLIASGSLDKTVRIWTQKKE