Gene Details:
- Gene ID: AT3G49480
- Gene Symbol: D5RF
- Gene Name: VirD5 response F-box protein
- Description: F-box/FBD/LRR protein;(source:Araport11)
- TAIR Accession: locus:2114718
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Gene Ontology:
- GO:0009617 — acts upstream of or within — response to bacterium
- GO:0005634 — located in — nucleus
- GO:0003674 — enables — molecular_function
Germplasm Phenotype:
- SALK_068361 — Fewer tumors after Agrobacterium-mediated transformation.
Literature:
- Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana. DOI: 10.1093/molbev/msq204 ; PMID: 20736450
Sequences:
cDNA Sequence
- >AT3G49480.1
ATGCCTAAGAGCTTTTACTTTTGCAAAACGCTTGAGAGATTGACTCTCTCCGACAAGATTCTTGTGGATGTTCCTTGTCAAGTCTCTCTCCCATCACTTAGAGAACTTGATCTCTTCTGTGTTGTGTACAAAGACGAAGATTCTCATGTTAAGCTTCTATCAAGTTGTCCCGTTCTCAAGCATCTAAAGGTGACTCGAAATAGACGTGTGGAAGATAATGTGAGAACGTTTAGGGTTGAAGTGCCTTCTTTATTGAGATTAGACTACAAAGCAGGTATGATGTTTCGAGAAGACAGTGATATGTCTGATCCGTTTTTGGTTACAGACACTCCGAATTTATTGTCTCTTCACATCTTTGATACTGTGGGATACTCTCTCTCAGTTTGGTACATGCCCCATCTTGTCACAGTAGTTACTGATGAGCTGTTCCCTAGTGAAAAATTTATGAGGCCTCTCTCTTCGGTCAAGTATCTTGCGCTATCTCCGTTCGATACAATGGTTCCGTGGTGTGACGCAGTTAATAACTACTCTCGACTTGTTGAATGTATGATACATCTATCTGAGTATGACTTGTTGGAATCACTTTTGGTTTTGCTCTCTAAGTGTTCTAAGCTTAAAGTTTTTCTGGTCGACTCCGACATTCCGAGATGGAATCATGACCCAGCTTTATGGAATCAACCGAGTTCTATTCCAAGATGTTTGTCGTCGCATCTCGAGATCTTTGAGTGGGACGGATATGTTGGAAGAGAAGATGAGAAAAAAATCATAAGGTACATTCTAGAAAACTCCAAATATTTAAAAACAGCGGGAATCTCACCGAATTCAACCTTCAGTGGTGAAGAGAAACAGAAGATGGAGGAGTTAGAATCAATGCATAGGACTCCAACGTCTGTGCTTCTGTCCTCTGCTCGAATGTCATTTAGATATTAG - >AT3G49480.2
ATGCCTAAGAGCTTTTACTTTTGCAAAACGCTTGAGAGATTGACTCTCTCCGACAAGATTCTTGTGGATGTTCCTTGTCAAGTCTCTCTCCCATCACTTAGAGAACTTGATCTCTTCTGTGTTGTGTACAAAGACGAAGATTCTCATGTTAAGCTTCTATCAAGTTGTCCCGTTCTCAAGCATCTAAAGGTGACTCGAAATAGACGTGTGGAAGATAATGTGAGAACGTTTAGGGTTGAAGTGCCTTCTTTATTGAGATTAGACTACAAAGCAGGTATGATGTTTCGAGAAGACAGTGATATGTCTGATCCGTTTTTGGTTACAGACACTCCGAATTTATTGTCTCTTCACATCTTTGATACTGTGGGATACTCTCTCTCAGTTTGGTACATGCCCCATCTTGTCACAGTAGTTACTGATGAGCTGTTCCCTAGTGAAAAATTTATGAGGCCTCTCTCTTCGGTCAAGTATCTTGCGCTATCTCCGTTCGATACAATGGTTCCGTGGTGTGACGCAGTTAATAACTACTCTCGACTTGTTGAATGTATGATACATCTATCTGAGTATGACTTGTTGGAATCACTTTTGGTTTTGCTCTCTAAGTGTTCTAAGCTTAAAGTTTTTCTGGTCGACTCCGACATTCCGAGATGGAATCATGACCCAGCTTTATGGAATCAACCGAGTTCTATTCCAAGATGTTTGTCGTCGCATCTCGAGATCTTTGAGTGGGACGGATATGTTGGAAGAGAAGATGAGAAAAAAATCATAAGGTACATTCTAGAAAACTCCAAATATTTAAAAACAGCGGGAATCTCACCGAATTCAACCTTCAGTGGTGAAGAGAAACAGAAGATGGAGGAGTTAGAATCAATGCATAGGACTCCAACGTCTGTGCTTCTGTCCTCTGCTCGAATGTCATTTAGATATTAG
CDS Sequence
- >AT3G49480.1
ATGCCTAAGAGCTTTTACTTTTGCAAAACGCTTGAGAGATTGACTCTCTCCGACAAGATTCTTGTGGATGTTCCTTGTCAAGTCTCTCTCCCATCACTTAGAGAACTTGATCTCTTCTGTGTTGTGTACAAAGACGAAGATTCTCATGTTAAGCTTCTATCAAGTTGTCCCGTTCTCAAGCATCTAAAGGTGACTCGAAATAGACGTGTGGAAGATAATGTGAGAACGTTTAGGGTTGAAGTGCCTTCTTTATTGAGATTAGACTACAAAGCAGGTATGATGTTTCGAGAAGACAGTGATATGTCTGATCCGTTTTTGGTTACAGACACTCCGAATTTATTGTCTCTTCACATCTTTGATACTGTGGGATACTCTCTCTCAGTTTGGTACATGCCCCATCTTGTCACAGTAGTTACTGATGAGCTGTTCCCTAGTGAAAAATTTATGAGGCCTCTCTCTTCGGTCAAGTATCTTGCGCTATCTCCGTTCGATACAATGGTTCCGTGGTGTGACGCAGTTAATAACTACTCTCGACTTGTTGAATGTATGATACATCTATCTGAGTATGACTTGTTGGAATCACTTTTGGTTTTGCTCTCTAAGTGTTCTAAGCTTAAAGTTTTTCTGGTCGACTCCGACATTCCGAGATGGAATCATGACCCAGCTTTATGGAATCAACCGAGTTCTATTCCAAGATGTTTGTCGTCGCATCTCGAGATCTTTGAGTGGGACGGATATGTTGGAAGAGAAGATGAGAAAAAAATCATAAGGTACATTCTAGAAAACTCCAAATATTTAAAAACAGCGGGAATCTCACCGAATTCAACCTTCAGTGGTGAAGAGAAACAGAAGATGGAGGAGTTAGAATCAATGCATAGGACTCCAACGTCTGTGCTTCTGTCCTCTGCTCGAATGTCATTTAGATATTAG - >AT3G49480.2
ATGCCTAAGAGCTTTTACTTTTGCAAAACGCTTGAGAGATTGACTCTCTCCGACAAGATTCTTGTGGATGTTCCTTGTCAAGTCTCTCTCCCATCACTTAGAGAACTTGATCTCTTCTGTGTTGTGTACAAAGACGAAGATTCTCATGTTAAGCTTCTATCAAGTTGTCCCGTTCTCAAGCATCTAAAGGTGACTCGAAATAGACGTGTGGAAGATAATGTGAGAACGTTTAGGGTTGAAGTGCCTTCTTTATTGAGATTAGACTACAAAGCAGGTATGATGTTTCGAGAAGACAGTGATATGTCTGATCCGTTTTTGGTTACAGACACTCCGAATTTATTGTCTCTTCACATCTTTGATACTGTGGGATACTCTCTCTCAGTTTGGTACATGCCCCATCTTGTCACAGTAGTTACTGATGAGCTGTTCCCTAGTGAAAAATTTATGAGGCCTCTCTCTTCGGTCAAGTATCTTGCGCTATCTCCGTTCGATACAATGGTTCCGTGGTGTGACGCAGTTAATAACTACTCTCGACTTGTTGAATGTATGATACATCTATCTGAGTATGACTTGTTGGAATCACTTTTGGTTTTGCTCTCTAAGTGTTCTAAGCTTAAAGTTTTTCTGGTCGACTCCGACATTCCGAGATGGAATCATGACCCAGCTTTATGGAATCAACCGAGTTCTATTCCAAGATGTTTGTCGTCGCATCTCGAGATCTTTGAGTGGGACGGATATGTTGGAAGAGAAGATGAGAAAAAAATCATAAGGTACATTCTAGAAAACTCCAAATATTTAAAAACAGCGGGAATCTCACCGAATTCAACCTTCAGTGGTGAAGAGAAACAGAAGATGGAGGAGTTAGAATCAATGCATAGGACTCCAACGTCTGTGCTTCTGTCCTCTGCTCGAATGTCATTTAGATATTAG
Protein Sequence
- >AT3G49480.1
MPKSFYFCKTLERLTLSDKILVDVPCQVSLPSLRELDLFCVVYKDEDSHVKLLSSCPVLKHLKVTRNRRVEDNVRTFRVEVPSLLRLDYKAGMMFREDSDMSDPFLVTDTPNLLSLHIFDTVGYSLSVWYMPHLVTVVTDELFPSEKFMRPLSSVKYLALSPFDTMVPWCDAVNNYSRLVECMIHLSEYDLLESLLVLLSKCSKLKVFLVDSDIPRWNHDPALWNQPSSIPRCLSSHLEIFEWDGYVGREDEKKIIRYILENSKYLKTAGISPNSTFSGEEKQKMEELESMHRTPTSVLLSSARMSFRY - >AT3G49480.2
MPKSFYFCKTLERLTLSDKILVDVPCQVSLPSLRELDLFCVVYKDEDSHVKLLSSCPVLKHLKVTRNRRVEDNVRTFRVEVPSLLRLDYKAGMMFREDSDMSDPFLVTDTPNLLSLHIFDTVGYSLSVWYMPHLVTVVTDELFPSEKFMRPLSSVKYLALSPFDTMVPWCDAVNNYSRLVECMIHLSEYDLLESLLVLLSKCSKLKVFLVDSDIPRWNHDPALWNQPSSIPRCLSSHLEIFEWDGYVGREDEKKIIRYILENSKYLKTAGISPNSTFSGEEKQKMEELESMHRTPTSVLLSSARMSFRY