Gene Details:
- Gene ID: AT3G49180
- Gene Symbol: RID3
- Gene Name: ROOT INITIATION DEFECTIVE 3
- Description: Transducin/WD40 repeat-like superfamily protein;(source:Araport11)
- TAIR Accession:
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Plant Ontology Annotations:
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
Function-related keywords:
- shoot axis apex , leaf lamina base , root , shoot system , plant embryo , vascular leaf , stamen , sepal , flower , inflorescence flower pedicel , cotyledon , petiole , hypocotyl , leaf apex , collective leaf structure
Literature:
- Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases. DOI: 10.1105/tpc.107.055418 ; PMID: 18223036
- Arabidopsis DDB1-CUL4 ASSOCIATED FACTOR1 forms a nuclear E3 ubiquitin ligase with DDB1 and CUL4 that is involved in multiple plant developmental processes. DOI: 10.1105/tpc.108.058891 ; PMID: 18552200
- Identification of novel meristem factors involved in shoot regeneration through the analysis of temperature-sensitive mutants of Arabidopsis. DOI: 10.1111/j.1365-313X.2008.03750.x ; PMID: 19054368
- Endogenous Arabidopsis messenger RNAs transported to distant tissues. DOI: 10.1038/nplants.2015.25 ; PMID: 27247031
- Characterization of Arabidopsis and rice DWD proteins and their roles as substrate receptors for CUL4-RING E3 ubiquitin ligases. DOI: 10.1105/tpc.107.055418 ; PMID: 18223036
- Arabidopsis DDB1-CUL4 ASSOCIATED FACTOR1 forms a nuclear E3 ubiquitin ligase with DDB1 and CUL4 that is involved in multiple plant developmental processes. DOI: 10.1105/tpc.108.058891 ; PMID: 18552200
Sequences:
cDNA Sequence
- >AT3G49180.1
TATAGATATCACAAAACCCAGACTTGGAATCAGTTTCTCTTTACTTCCCTCTTTCTCTGAGCTATGGAGATTACTGTAATCGCTTCTTCCTCAATCGATGAAGGAATTGGAAGTTGGGATCTCAAAACCGGGACAGAGCAGCTTCAATTCAAGCCGTGTGCTTCTCCGGCGCATGGTCTCACCGCCGTCGGCGAAAAATTTCTCGCCTCCTCTCAGCTCTCGGCGAGAAATACTTCTGGCTCGATTTTTTACTGGTCTTGGACTAAGCCTCAAGCTGAAGTGAAGAGCTACCCAGTGGAACCAATAAAGGCTCTTGCAGCAAACAATGAAGGAACTTACTTAGTTGGTGGTGGAATCTCTGGAGATATTTACCTTTGGGAGGTTGCGACTGGGAAGTTGCTTAAGAAGTGGCATGGTCATTATCGTTCAGTAACATGTTTGGTGTTCTCTGGAGATGATTCTTTGTTGGTTTCTGGATCTCAAGATGGGTCTATTAGAGTTTGGTCTCTTATAAGGCTATTTGATGATTTCCAGAGGCAGCAAGGGAACACTCTTTATGAACACAATTTTAATGAGCATACAATGTCTGTAACTGATATTGTTATAGACTATGGAGGCTGCAATGCTGTGATAATTTCCTCTTCAGAAGATCGGACTTGCAAGGTTTGGAGCTTGTCAAGAGGGAAATTGTTGAAAAATATCATTTTTCCTTCAGTCATCAATGCACTCGCATTGGACCCTGGAGGGTGTGTGTTCTATGCTGGTGCCAGAGACAGCAAAATCTATATCGGTGCCATTAATGCCACAAGTGAATACGGGACACAAGTTCTTGGTTCAGTATCTGAAAAAGGCAAAGCTATTACTTGCTTAGCATATTGTGCAGACGGAAACCTTTTGATATCTGGATCAGAAGATGGTGTGGTTTGTGTTTGGGATCCCAAATCACTTCGCCATGTTCGTACTCTCATCCATGCAAAAGGTTCTAGAAAAGGTCCTGTGAACAATATTCAAATTGTTAGAAAAACGATTGTTGCTAATTCCAACAAAACCCAAGTTTCCTGGAAAAGTCGTGGGGCTTTAATCCCACCGCCTTTGGAAAAATATGAAAGACCAGTAGAAGATACTATGGATGGTATCGTTACGGTTGATCCGCCGCCATTTTCTGATGTTCCTGTTTACTCTTCTTTCCTCAGTGCTGACCTTATTGACGAGCAAGTTAAAGAACTTCAGCAACAAGGCTCTGCAGCAACAGAGATGGAAATGGAAAGACTGAAACTTGAATACAAAAGATCTTTACAGATGAATGAACAATGGCAGAAGAACTATGAGAATTTGCTTCAAGTGGTTATGGAAGAAGAACAAATCGGTGGTACCAATTGAAAGCTTTTTATTGTTGTTTCTACACATTTTTGGAATTACATTAAGAGATATTGTCAAGTGGCATATGAAGTCGTCACTAAAGATATGTTTTATCAAGATCCCAAATTTAGGTATCATAGCATTCTGTAAA
CDS Sequence
- >AT3G49180.1
ATGGAGATTACTGTAATCGCTTCTTCCTCAATCGATGAAGGAATTGGAAGTTGGGATCTCAAAACCGGGACAGAGCAGCTTCAATTCAAGCCGTGTGCTTCTCCGGCGCATGGTCTCACCGCCGTCGGCGAAAAATTTCTCGCCTCCTCTCAGCTCTCGGCGAGAAATACTTCTGGCTCGATTTTTTACTGGTCTTGGACTAAGCCTCAAGCTGAAGTGAAGAGCTACCCAGTGGAACCAATAAAGGCTCTTGCAGCAAACAATGAAGGAACTTACTTAGTTGGTGGTGGAATCTCTGGAGATATTTACCTTTGGGAGGTTGCGACTGGGAAGTTGCTTAAGAAGTGGCATGGTCATTATCGTTCAGTAACATGTTTGGTGTTCTCTGGAGATGATTCTTTGTTGGTTTCTGGATCTCAAGATGGGTCTATTAGAGTTTGGTCTCTTATAAGGCTATTTGATGATTTCCAGAGGCAGCAAGGGAACACTCTTTATGAACACAATTTTAATGAGCATACAATGTCTGTAACTGATATTGTTATAGACTATGGAGGCTGCAATGCTGTGATAATTTCCTCTTCAGAAGATCGGACTTGCAAGGTTTGGAGCTTGTCAAGAGGGAAATTGTTGAAAAATATCATTTTTCCTTCAGTCATCAATGCACTCGCATTGGACCCTGGAGGGTGTGTGTTCTATGCTGGTGCCAGAGACAGCAAAATCTATATCGGTGCCATTAATGCCACAAGTGAATACGGGACACAAGTTCTTGGTTCAGTATCTGAAAAAGGCAAAGCTATTACTTGCTTAGCATATTGTGCAGACGGAAACCTTTTGATATCTGGATCAGAAGATGGTGTGGTTTGTGTTTGGGATCCCAAATCACTTCGCCATGTTCGTACTCTCATCCATGCAAAAGGTTCTAGAAAAGGTCCTGTGAACAATATTCAAATTGTTAGAAAAACGATTGTTGCTAATTCCAACAAAACCCAAGTTTCCTGGAAAAGTCGTGGGGCTTTAATCCCACCGCCTTTGGAAAAATATGAAAGACCAGTAGAAGATACTATGGATGGTATCGTTACGGTTGATCCGCCGCCATTTTCTGATGTTCCTGTTTACTCTTCTTTCCTCAGTGCTGACCTTATTGACGAGCAAGTTAAAGAACTTCAGCAACAAGGCTCTGCAGCAACAGAGATGGAAATGGAAAGACTGAAACTTGAATACAAAAGATCTTTACAGATGAATGAACAATGGCAGAAGAACTATGAGAATTTGCTTCAAGTGGTTATGGAAGAAGAACAAATCGGTGGTACCAATTGA
Protein Sequence
- >AT3G49180.1
MEITVIASSSIDEGIGSWDLKTGTEQLQFKPCASPAHGLTAVGEKFLASSQLSARNTSGSIFYWSWTKPQAEVKSYPVEPIKALAANNEGTYLVGGGISGDIYLWEVATGKLLKKWHGHYRSVTCLVFSGDDSLLVSGSQDGSIRVWSLIRLFDDFQRQQGNTLYEHNFNEHTMSVTDIVIDYGGCNAVIISSSEDRTCKVWSLSRGKLLKNIIFPSVINALALDPGGCVFYAGARDSKIYIGAINATSEYGTQVLGSVSEKGKAITCLAYCADGNLLISGSEDGVVCVWDPKSLRHVRTLIHAKGSRKGPVNNIQIVRKTIVANSNKTQVSWKSRGALIPPPLEKYERPVEDTMDGIVTVDPPPFSDVPVYSSFLSADLIDEQVKELQQQGSAATEMEMERLKLEYKRSLQMNEQWQKNYENLLQVVMEEEQIGGTN