Information report for AT3G49170
Gene Details
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Functional Descriptions
- GO:0009793 — acts upstream of or within — embryo development ending in seed dormancy
- GO:0009451 — involved in — RNA modification
- GO:0008270 — enables — zinc ion binding
- CS16045 — Embryos consistently initiated cotyledons and continued growth and cell division beyond heart stage. Embryos consistently failed to elongate, developing instead as v-shaped embryos with wide,stunted cotyledons and no hypocotyl.
- CS16045 — embryo defective; developmental arrest of mutant embryos
Functional Keywords
Literature and News
- Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. DOI: 10.1074/jbc.M308435200 ; PMID: 14576160
- Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis. DOI: 10.1105/tpc.104.022236 ; PMID: 15269332
- Identification of genes required for embryo development in Arabidopsis. DOI: 10.1104/pp.104.045179 ; PMID: 15266054
- Arabidopsis emb175 and other ppr knockout mutants reveal essential roles for pentatricopeptide repeat (PPR) proteins in plant embryogenesis. DOI: 10.1007/s00425-004-1452-x ; PMID: 15647901
- AtNAC2, a transcription factor downstream of ethylene and auxin signaling pathways, is involved in salt stress response and lateral root development. DOI: 10.1111/j.1365-313X.2005.02575.x ; PMID: 16359384
- Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis. DOI: 10.1104/pp.110.168120 ; PMID: 21139083
- Genome-wide identification of EMBRYO-DEFECTIVE (EMB) genes required for growth and development in Arabidopsis. DOI: 10.1111/nph.16071 ; PMID: 31334862
- Discovering the RNA-Binding Proteome of Plant Leaves with an Improved RNA Interactome Capture Method. DOI: 10.3390/biom10040661 ; PMID: 32344669
- Arabidopsis emb175 and other ppr knockout mutants reveal essential roles for pentatricopeptide repeat (PPR) proteins in plant embryogenesis. DOI: 10.1007/s00425-004-1452-x ; PMID: 15647901
Gene Resources
Homologs
- Citrullus lanatus Cla97C09G165370
- Gossypium barbadense Gobar.D03G069200, Gobar.A02G135500
- Gossypium hirsutum Gh_A13G0768, Gohir.D03G065000
- Juglans regia Jr12_20270
- Malus domestica MD17G1217600
- Musa acuminata Ma06_g03330
- Oryza sativa OsPPR16, PPS1
- Rosa chinensis RchiOBHm_Chr5g0011421
- Saccharum spontaneum Sspon.02G0050800-1C
- Setaria italica Seita.3G137300
- Setaria viridis SEVIR_3G139200v2
Sequences
cDNA Sequence
- >AT3G49170.1
TTGGAGAACAATGGCGATGATAAGCTTTTCGTTTCCATCTCCCGCCAAACTTCCGATTAAATCTCAACCGTCCGTTTCAAATCGGATCAACGTCGCCGACCGTTTGATTCTCCGTCATCTCAATGCCGGAGATCTTCGTGGAGCGGTTTCAGCTCTTGATCTCATGGCTCGTGATGGGATTCGTCCTATGGACTCAGTCACTTTCTCTTCACTTCTCAAATCTTGTATCCGAGCACGCGATTTTCGTCTCGGGAAACTCGTACACGCTCGATTAATCGAGTTTGATATCGAGCCTGATTCGGTTCTCTACAATTCGTTGATTAGCTTGTATTCGAAATCTGGAGATTCGGCGAAAGCTGAAGATGTGTTTGAGACTATGAGAAGATTTGGTAAGCGAGATGTTGTTTCGTGGAGTGCGATGATGGCTTGTTACGGTAACAACGGAAGAGAATTAGATGCAATTAAGGTTTTTGTTGAGTTTCTGGAGTTAGGTTTGGTGCCTAATGATTATTGTTACACGGCGGTGATACGAGCTTGTTCGAATTCGGATTTTGTTGGAGTTGGGAGAGTGACTTTAGGGTTTTTGATGAAGACTGGGCATTTTGAATCTGATGTGTGTGTGGGTTGTTCTTTGATTGACATGTTTGTGAAAGGAGAGAATAGCTTTGAGAATGCGTATAAGGTGTTTGATAAAATGTCTGAACTAAATGTTGTTACTTGGACTTTGATGATTACTCGGTGTATGCAGATGGGGTTTCCTAGGGAAGCGATTAGGTTTTTCTTGGATATGGTTTTAAGTGGATTTGAATCAGATAAGTTCACACTAAGCTCTGTGTTTTCGGCTTGTGCTGAGTTGGAGAACTTGTCTTTGGGAAAGCAGTTGCATTCTTGGGCTATTAGATCAGGGCTTGTGGATGATGTTGAATGTAGTTTAGTTGATATGTATGCGAAATGTTCTGCGGATGGTTCGGTAGATGATTGCAGGAAGGTGTTTGATAGAATGGAGGATCATAGTGTTATGTCGTGGACGGCATTGATCACTGGTTATATGAAAAACTGTAATCTCGCTACAGAGGCTATTAATCTCTTTAGTGAAATGATAACGCAAGGTCATGTTGAGCCAAATCATTTCACTTTCTCGAGTGCATTCAAGGCGTGTGGAAATCTTTCGGATCCACGGGTAGGTAAACAGGTTCTTGGTCAAGCTTTCAAAAGAGGGCTTGCTTCGAATAGCAGTGTTGCAAACTCGGTTATCAGCATGTTTGTTAAATCTGACAGGATGGAAGATGCTCAGAGAGCTTTTGAGTCACTTTCTGAGAAGAACTTGGTTTCGTATAATACATTTCTTGACGGAACATGCAGGAACTTGAATTTTGAGCAAGCATTTAAGCTTTTAAGTGAGATCACTGAGAGAGAATTAGGTGTTAGCGCTTTCACATTTGCTAGCTTGTTGAGTGGAGTTGCAAATGTTGGTTCAATAAGAAAAGGCGAGCAAATCCATTCTCAGGTGGTTAAACTCGGGCTCTCGTGCAATCAACCCGTCTGCAATGCTTTGATCTCTATGTATTCCAAATGTGGAAGCATTGACACAGCTTCCCGAGTCTTCAATTTTATGGAAAATCGTAATGTCATCTCGTGGACTTCAATGATCACAGGTTTCGCTAAACACGGATTCGCTATAAGGGTACTCGAAACATTCAACCAAATGATAGAAGAAGGGGTGAAGCCAAATGAGGTCACTTATGTTGCAATCTTATCGGCATGCAGCCATGTTGGTTTGGTCTCCGAAGGATGGAGACATTTCAATTCAATGTATGAAGACCACAAGATCAAACCTAAGATGGAACACTATGCTTGTATGGTTGATCTTCTATGTCGAGCCGGGCTTCTCACAGACGCATTTGAGTTCATTAACACAATGCCCTTCCAAGCCGATGTTTTAGTATGGCGTACGTTTCTTGGAGCTTGCAGAGTTCACAGTAACACAGAACTCGGAAAGTTGGCTGCGAGGAAGATCTTAGAACTTGATCCGAATGAGCCTGCAGCTTATATACAGCTCTCAAACATATACGCTTGTGCAGGGAAATGGGAAGAATCTACGGAGATGAGGAGGAAGATGAAAGAGAGAAACTTGGTTAAAGAAGGAGGTTGCAGTTGGATAGAAGTGGGAGATAAAATTCATAAGTTCTACGTAGGTGATACAGCTCACCCGAATGCTCACCAAATATATGATGAATTGGATCGGTTAATTACAGAAATAAAACGCTGCGGATATGTTCCTGATACGGATCTTGTTCTTCACAAGCTAGAGGAGGAGAATGATGAGGCGGAGAAGGAGAGGTTACTATATCAGCACAGCGAGAAAATTGCGGTTGCGTTTGGGCTTATAAGCACGTCGAAATCTAGACCGGTTAGGGTGTTCAAGAACTTACGGGTCTGCGGAGATTGCCATAACGCGATGAAATATATATCGACAGTCTCTGGTAGAGAGATTGTGTTGAGGGATTTGAATCGTTTTCATCATTTTAAAGATGGGAAATGTTCTTGTAATGATTATTGGTGAATGGTGACTTTGAGATTTAGATACACAAATGAGGCTTTTCTATTCAATGTTATTTTAAATCTTGAGGATTTTGGGTTCAATGTGATCGTTCTTTTTAAAAATAAATAAAGAGAAGCATTCTAATTTA
CDS Sequence
- >AT3G49170.1
ATGGCGATGATAAGCTTTTCGTTTCCATCTCCCGCCAAACTTCCGATTAAATCTCAACCGTCCGTTTCAAATCGGATCAACGTCGCCGACCGTTTGATTCTCCGTCATCTCAATGCCGGAGATCTTCGTGGAGCGGTTTCAGCTCTTGATCTCATGGCTCGTGATGGGATTCGTCCTATGGACTCAGTCACTTTCTCTTCACTTCTCAAATCTTGTATCCGAGCACGCGATTTTCGTCTCGGGAAACTCGTACACGCTCGATTAATCGAGTTTGATATCGAGCCTGATTCGGTTCTCTACAATTCGTTGATTAGCTTGTATTCGAAATCTGGAGATTCGGCGAAAGCTGAAGATGTGTTTGAGACTATGAGAAGATTTGGTAAGCGAGATGTTGTTTCGTGGAGTGCGATGATGGCTTGTTACGGTAACAACGGAAGAGAATTAGATGCAATTAAGGTTTTTGTTGAGTTTCTGGAGTTAGGTTTGGTGCCTAATGATTATTGTTACACGGCGGTGATACGAGCTTGTTCGAATTCGGATTTTGTTGGAGTTGGGAGAGTGACTTTAGGGTTTTTGATGAAGACTGGGCATTTTGAATCTGATGTGTGTGTGGGTTGTTCTTTGATTGACATGTTTGTGAAAGGAGAGAATAGCTTTGAGAATGCGTATAAGGTGTTTGATAAAATGTCTGAACTAAATGTTGTTACTTGGACTTTGATGATTACTCGGTGTATGCAGATGGGGTTTCCTAGGGAAGCGATTAGGTTTTTCTTGGATATGGTTTTAAGTGGATTTGAATCAGATAAGTTCACACTAAGCTCTGTGTTTTCGGCTTGTGCTGAGTTGGAGAACTTGTCTTTGGGAAAGCAGTTGCATTCTTGGGCTATTAGATCAGGGCTTGTGGATGATGTTGAATGTAGTTTAGTTGATATGTATGCGAAATGTTCTGCGGATGGTTCGGTAGATGATTGCAGGAAGGTGTTTGATAGAATGGAGGATCATAGTGTTATGTCGTGGACGGCATTGATCACTGGTTATATGAAAAACTGTAATCTCGCTACAGAGGCTATTAATCTCTTTAGTGAAATGATAACGCAAGGTCATGTTGAGCCAAATCATTTCACTTTCTCGAGTGCATTCAAGGCGTGTGGAAATCTTTCGGATCCACGGGTAGGTAAACAGGTTCTTGGTCAAGCTTTCAAAAGAGGGCTTGCTTCGAATAGCAGTGTTGCAAACTCGGTTATCAGCATGTTTGTTAAATCTGACAGGATGGAAGATGCTCAGAGAGCTTTTGAGTCACTTTCTGAGAAGAACTTGGTTTCGTATAATACATTTCTTGACGGAACATGCAGGAACTTGAATTTTGAGCAAGCATTTAAGCTTTTAAGTGAGATCACTGAGAGAGAATTAGGTGTTAGCGCTTTCACATTTGCTAGCTTGTTGAGTGGAGTTGCAAATGTTGGTTCAATAAGAAAAGGCGAGCAAATCCATTCTCAGGTGGTTAAACTCGGGCTCTCGTGCAATCAACCCGTCTGCAATGCTTTGATCTCTATGTATTCCAAATGTGGAAGCATTGACACAGCTTCCCGAGTCTTCAATTTTATGGAAAATCGTAATGTCATCTCGTGGACTTCAATGATCACAGGTTTCGCTAAACACGGATTCGCTATAAGGGTACTCGAAACATTCAACCAAATGATAGAAGAAGGGGTGAAGCCAAATGAGGTCACTTATGTTGCAATCTTATCGGCATGCAGCCATGTTGGTTTGGTCTCCGAAGGATGGAGACATTTCAATTCAATGTATGAAGACCACAAGATCAAACCTAAGATGGAACACTATGCTTGTATGGTTGATCTTCTATGTCGAGCCGGGCTTCTCACAGACGCATTTGAGTTCATTAACACAATGCCCTTCCAAGCCGATGTTTTAGTATGGCGTACGTTTCTTGGAGCTTGCAGAGTTCACAGTAACACAGAACTCGGAAAGTTGGCTGCGAGGAAGATCTTAGAACTTGATCCGAATGAGCCTGCAGCTTATATACAGCTCTCAAACATATACGCTTGTGCAGGGAAATGGGAAGAATCTACGGAGATGAGGAGGAAGATGAAAGAGAGAAACTTGGTTAAAGAAGGAGGTTGCAGTTGGATAGAAGTGGGAGATAAAATTCATAAGTTCTACGTAGGTGATACAGCTCACCCGAATGCTCACCAAATATATGATGAATTGGATCGGTTAATTACAGAAATAAAACGCTGCGGATATGTTCCTGATACGGATCTTGTTCTTCACAAGCTAGAGGAGGAGAATGATGAGGCGGAGAAGGAGAGGTTACTATATCAGCACAGCGAGAAAATTGCGGTTGCGTTTGGGCTTATAAGCACGTCGAAATCTAGACCGGTTAGGGTGTTCAAGAACTTACGGGTCTGCGGAGATTGCCATAACGCGATGAAATATATATCGACAGTCTCTGGTAGAGAGATTGTGTTGAGGGATTTGAATCGTTTTCATCATTTTAAAGATGGGAAATGTTCTTGTAATGATTATTGGTGA
Protein Sequence
- >AT3G49170.1
MAMISFSFPSPAKLPIKSQPSVSNRINVADRLILRHLNAGDLRGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSGLVDDVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSCNDYW