Information report for AT3G48960
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- GO:0022625 — located in — cytosolic large ribosomal subunit
- GO:0022625 — part of — cytosolic large ribosomal subunit
- GO:0003723 — enables — RNA binding
- GO:0006412 — involved in — translation
- GO:0005737 — located in — cytoplasm
- GO:0003735 — enables — structural constituent of ribosome
Functional Keywords
Literature and News
- The organization of cytoplasmic ribosomal protein genes in the Arabidopsis genome. DOI: 6834 ; PMID: 11598216
- Large expression differences in genes for iron and zinc homeostasis, stress response, and lignin biosynthesis distinguish roots of Arabidopsis thaliana and the related metal hyperaccumulator Thlaspi caerulescens. DOI: 10.1104/pp.106.082073 ; PMID: 16998091
- Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. DOI: 10.1074/mcp.M700052-MCP200 ; PMID: 17934214
- Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis. DOI: 10.1186/s12870-018-1255-z ; PMID: 29490615
- Plant cytoplasmic ribosomal proteins: an update on classification, nomenclature, evolution and resources. DOI: 10.1111/tpj.15667 ; PMID: 35000252
- An updated nomenclature for plant ribosomal protein genes. DOI: 10.1093/plcell/koac333 ; PMID: 36423343
- Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. DOI: 10.1074/mcp.M700052-MCP200 ; PMID: 17934214
Gene Resources
- UniProt: A0A178V6A2
- EMBL: LUHQ01000003
- AlphaFoldDB: A0A178V6A2
- EnsemblPlants: AT3G48960.1
- Gramene: AT3G48960.1
- KEGG: ath:AT3G48960
- ExpressionAtlas: AT3G48960
- InterPro: IPR001380, IPR018256
- PANTHER: PTHR11722, PTHR11722:SF12
- PROSITE: PS01104
- Gene3D: 1.20.5.110
- SWISS-MODEL: A0A178V6A2
Homologs
- Oryza sativa OsiBBC1
Sequences
cDNA Sequence
- >AT3G48960.1
ATGAAGCACAATAATGTTATCCCCAATGGTCACTTCAAAAAGAAGTGGGAAAACTATGTCAAAACTTCGTTCAACCAACCTGCCATGAAAACCAGAAGAAGAATTGCGAGGCAGAATAAGGCTGTGAAGATCTTTCCCCGTCCCACTGCTGGACCTATCCGACCTGTTGTACATGCTCAGACTCTTACGTACAACATGAAAGTCAGAGCCGGTAAAGGATTCACTCTTGAAGAGCTAAAGGCTGCTGGTATCCCCAAGAAGTTGGCTCCTACAATCGGTATTTCTGTTGACCATCATCGCAAGAACCGGTCTTTGGAGGGTTTTCAAACCAACGTCCAGAGGCTGAAAACCTACAAGGCTAAGTTGGTTATCTTCCCGCGCTGTGCCCGAACGGTCAAGGTTGGTGATTCTGCACAACAAGAGTTGGCCAATGCAACACAAGTCCAAGTAGATCACATGCCTATCGTTCGTGAAATGCCAACAATGGAGCTTGTGAAGCTGACATCTGACATGAAATTGTTCAATGCTTATGACAAGATCCGTCTAGAGGGCATAAACAAGAGACATGCTGGTGTTAGAGCCAAGAGAGCTGCTGAGGCTGAGAAAGAAGAGAAGAAGTGA
CDS Sequence
- >AT3G48960.1
ATGAAGCACAATAATGTTATCCCCAATGGTCACTTCAAAAAGAAGTGGGAAAACTATGTCAAAACTTCGTTCAACCAACCTGCCATGAAAACCAGAAGAAGAATTGCGAGGCAGAATAAGGCTGTGAAGATCTTTCCCCGTCCCACTGCTGGACCTATCCGACCTGTTGTACATGCTCAGACTCTTACGTACAACATGAAAGTCAGAGCCGGTAAAGGATTCACTCTTGAAGAGCTAAAGGCTGCTGGTATCCCCAAGAAGTTGGCTCCTACAATCGGTATTTCTGTTGACCATCATCGCAAGAACCGGTCTTTGGAGGGTTTTCAAACCAACGTCCAGAGGCTGAAAACCTACAAGGCTAAGTTGGTTATCTTCCCGCGCTGTGCCCGAACGGTCAAGGTTGGTGATTCTGCACAACAAGAGTTGGCCAATGCAACACAAGTCCAAGTAGATCACATGCCTATCGTTCGTGAAATGCCAACAATGGAGCTTGTGAAGCTGACATCTGACATGAAATTGTTCAATGCTTATGACAAGATCCGTCTAGAGGGCATAAACAAGAGACATGCTGGTGTTAGAGCCAAGAGAGCTGCTGAGGCTGAGAAAGAAGAGAAGAAGTGA
Protein Sequence
- >AT3G48960.1
MKHNNVIPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQTLTYNMKVRAGKGFTLEELKAAGIPKKLAPTIGISVDHHRKNRSLEGFQTNVQRLKTYKAKLVIFPRCARTVKVGDSAQQELANATQVQVDHMPIVREMPTMELVKLTSDMKLFNAYDKIRLEGINKRHAGVRAKRAAEAEKEEKK