Information report for AT3G48950
Gene Details
|
|
Functional Descriptions
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- GO:0005975 — involved in — carbohydrate metabolic process
- GO:0004650 — enables — polygalacturonase activity
- GO:0009507 — located in — chloroplast
Functional Keywords
Literature and News
- Analysis of the female gametophyte transcriptome of Arabidopsis by comparative expression profiling. DOI: 10.1104/pp.105.067314 ; PMID: 16299181
- Patterns of expansion and expression divergence in the plant polygalacturonase gene family. DOI: 10.1186/gb-2006-7-9-r87 ; PMID: 17010199
- Identification of genes expressed in the Arabidopsis female gametophyte. DOI: 10.1111/j.1365-313X.2007.03137.x ; PMID: 17559508
- Genetic subtraction profiling identifies genes essential for Arabidopsis reproduction and reveals interaction between the female gametophyte and the maternal sporophyte. DOI: 10.1186/gb-2007-8-10-r204 ; PMID: 17915010
- Arabidopsis female gametophyte gene expression map reveals similarities between plant and animal gametes. DOI: 10.1016/j.cub.2010.01.051 ; PMID: 20226671
- Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana. DOI: 10.1093/molbev/msq204 ; PMID: 20736450
- The pectin lyases in Arabidopsis thaliana: evolution, selection and expression profiles. DOI: 10.1371/journal.pone.0046944 ; PMID: 23056537
- Biochemical characterization of Arabidopsis clade F polygalacturonase shows a substrate preference toward oligogalacturonic acids. DOI: 10.1016/j.jbiosc.2021.08.007 ; PMID: 34690060
Gene Resources
- UniProt: Q9SMT3
- EMBL: AL132967, CP002686, DQ056615
- AlphaFoldDB: Q9SMT3
- EnsemblPlants: AT3G48950.1
- Gramene: AT3G48950.1
- KEGG: ath:AT3G48950
- Orthologous matrix: EIMYSKH
- ExpressionAtlas: AT3G48950
- InterPro: IPR000743, IPR006626, IPR011050
- PANTHER: PTHR31339, PTHR31339:SF12
- SUPFAM: SSF51126
- Gene3D: 2.160.20.10
- SWISS-MODEL: Q9SMT3
Homologs
- Brassica napus GSBRNA2T00139307001, GSBRNA2T00078063001
- Brassica rapa Brara.F03263
- Cicer arietinum Ca_01031
- Glycine max Glyma.18G156000.1.p
- Malus domestica Md-PG1
- Oryza sativa OsPG2, PSL1;OsPG1
- Petunia inflata Peinf101Scf04194g00019.1
- Pyrus bretschneideri Pbr023394.1
- Saccharum spontaneum Sspon.03G0015710-3C
- Zea mays Zm00001d010681
Sequences
cDNA Sequence
- >AT3G48950.1
AAACCAGAAGGAAGACATATTCCTCTGTTTAAAAATATCTTAAGATGATTAGACCAACGTTTGGTTTACTAGTCTTTTTGGCTATATTCCTTTTTCCGGCGATTGAATCCCGGAGTCACCGAAATTCGGTGACTTCCAAGATTGAATTTTCAGCGCTGAATTGCCGGAAACATAGTGCAATACTGACTGATTTTGGTGCGGTTGGAGATGGAAAAACTTCTAATACAAAAGCGTTTAGAAATGCCATAAGCAAGCTCAGCCAAATGGCAACCGATGGCGGAGCTCAACTCGTAGTACCTCCCGGAAAATGGCTTACCGGAAGTTTTAACCTTACAAGCCATTTCACTTTGTTCATCCAGCGAGGTGCTACCATCCTTGCATCTCAGGATGAATCTGAATGGCCAGTTATCGCTCCATTGCCATCGTACGGGAAAGGAAGAGACGGAACCGGAACCGGGAGATTCAACAGTCTCATCTCCGGTACAAACCTAACCGACGTGGTTATCACTGGTAACAACGGAACGATCAACGGACAGGGACAGTATTGGTGGGACAAATTCAAGAAGAAGCAGTTCAAAATAACAAGACCGTACTTGATCGAGATCTTGTTCTCCAAAAACATTCAAATCTCGAACATCACATTGATCGATTCGCCGTCGTGGAATATTCATCCTGTCTATTGTAATAGCGTCATTGTCAAATCCGTCACCGTTCTTGCTCCCGTCACTGTTCCCAACACCGACGGTATCAATCCAGATTCTTGCACAAACACATTGATCGAAGACTGTTACATAGTCTCCGGAGACGACTGCATCGCCGTCAAAAGCGGTTGGGACCAATACGGAATCAAATTCGGAATGCCGACGCAGCAACTCTCGATCCGACGGCTGACATGCATCTCCCCAAAGAGTGCAGGAGTAGCCTTAGGAAGTGAAATGTCCGGAGGAATCAAAGACGTTAGAATCGAAGATGTAACTCTAACCAACACCGAATCCGCCATCCGAATCAAAACTGCGGTGGGACGTGGCGCTTACGTCAAGGATATTTACGCTAGGAGGATCACAATGAAGACGATGAAATATGTTTTCTGGATGAGTGGAAACTACGGTAGTCATCCTGACGAAGGATTTGATCCCAAGGCGTTGCCGGAAATTACTAATATCAATTACCGCGATATGACGGCGGAGAATGTTACAATGTCAGCGAGTCTCGACGGGATTGATAAAGATCCGTTTACGGGTATTTGTATCTCGAATGTGACTATAGCTTTGGCGGCTAAGGCTAAGAAAATGCAGTGGAATTGTACAGATGTGGCTGGAGTTACCAGCAGAGTTACGCCAGAGCCATGTAGTTTGTTGCCTGAGAAGAAAGCTCAGGCGAAGAATGTTGACTGTGCGTTTCCGTCTGATTTGATTCCGATTGAGAGTGTTGTATTGAAGAAGTGCTTTCTTTGACGTAGTATAGTGATATTAACAGATTAAGATGCATTAATACTTTATATGAAATTTCATTATAATGAAATAAG
CDS Sequence
- >AT3G48950.1
ATGATTAGACCAACGTTTGGTTTACTAGTCTTTTTGGCTATATTCCTTTTTCCGGCGATTGAATCCCGGAGTCACCGAAATTCGGTGACTTCCAAGATTGAATTTTCAGCGCTGAATTGCCGGAAACATAGTGCAATACTGACTGATTTTGGTGCGGTTGGAGATGGAAAAACTTCTAATACAAAAGCGTTTAGAAATGCCATAAGCAAGCTCAGCCAAATGGCAACCGATGGCGGAGCTCAACTCGTAGTACCTCCCGGAAAATGGCTTACCGGAAGTTTTAACCTTACAAGCCATTTCACTTTGTTCATCCAGCGAGGTGCTACCATCCTTGCATCTCAGGATGAATCTGAATGGCCAGTTATCGCTCCATTGCCATCGTACGGGAAAGGAAGAGACGGAACCGGAACCGGGAGATTCAACAGTCTCATCTCCGGTACAAACCTAACCGACGTGGTTATCACTGGTAACAACGGAACGATCAACGGACAGGGACAGTATTGGTGGGACAAATTCAAGAAGAAGCAGTTCAAAATAACAAGACCGTACTTGATCGAGATCTTGTTCTCCAAAAACATTCAAATCTCGAACATCACATTGATCGATTCGCCGTCGTGGAATATTCATCCTGTCTATTGTAATAGCGTCATTGTCAAATCCGTCACCGTTCTTGCTCCCGTCACTGTTCCCAACACCGACGGTATCAATCCAGATTCTTGCACAAACACATTGATCGAAGACTGTTACATAGTCTCCGGAGACGACTGCATCGCCGTCAAAAGCGGTTGGGACCAATACGGAATCAAATTCGGAATGCCGACGCAGCAACTCTCGATCCGACGGCTGACATGCATCTCCCCAAAGAGTGCAGGAGTAGCCTTAGGAAGTGAAATGTCCGGAGGAATCAAAGACGTTAGAATCGAAGATGTAACTCTAACCAACACCGAATCCGCCATCCGAATCAAAACTGCGGTGGGACGTGGCGCTTACGTCAAGGATATTTACGCTAGGAGGATCACAATGAAGACGATGAAATATGTTTTCTGGATGAGTGGAAACTACGGTAGTCATCCTGACGAAGGATTTGATCCCAAGGCGTTGCCGGAAATTACTAATATCAATTACCGCGATATGACGGCGGAGAATGTTACAATGTCAGCGAGTCTCGACGGGATTGATAAAGATCCGTTTACGGGTATTTGTATCTCGAATGTGACTATAGCTTTGGCGGCTAAGGCTAAGAAAATGCAGTGGAATTGTACAGATGTGGCTGGAGTTACCAGCAGAGTTACGCCAGAGCCATGTAGTTTGTTGCCTGAGAAGAAAGCTCAGGCGAAGAATGTTGACTGTGCGTTTCCGTCTGATTTGATTCCGATTGAGAGTGTTGTATTGAAGAAGTGCTTTCTTTGA
Protein Sequence
- >AT3G48950.1
MIRPTFGLLVFLAIFLFPAIESRSHRNSVTSKIEFSALNCRKHSAILTDFGAVGDGKTSNTKAFRNAISKLSQMATDGGAQLVVPPGKWLTGSFNLTSHFTLFIQRGATILASQDESEWPVIAPLPSYGKGRDGTGTGRFNSLISGTNLTDVVITGNNGTINGQGQYWWDKFKKKQFKITRPYLIEILFSKNIQISNITLIDSPSWNIHPVYCNSVIVKSVTVLAPVTVPNTDGINPDSCTNTLIEDCYIVSGDDCIAVKSGWDQYGIKFGMPTQQLSIRRLTCISPKSAGVALGSEMSGGIKDVRIEDVTLTNTESAIRIKTAVGRGAYVKDIYARRITMKTMKYVFWMSGNYGSHPDEGFDPKALPEITNINYRDMTAENVTMSASLDGIDKDPFTGICISNVTIALAAKAKKMQWNCTDVAGVTSRVTPEPCSLLPEKKAQAKNVDCAFPSDLIPIESVVLKKCFL