Information report for AT3G48730
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- PO:0000293 — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)
Functional Keywords
- shoot axis apex , leaf lamina base , root , shoot system , plant embryo , vascular leaf , stamen , sepal , flower , inflorescence flower pedicel , cotyledon , petiole , hypocotyl , leaf apex , collective leaf structure , pollen , guard cell
Literature and News
- Light regulation of chlorophyll biosynthesis at the level of 5-aminolevulinate formation in Arabidopsis. DOI: 10.1105/tpc.6.2.265 ; PMID: 7908550
- Genome organization in Arabidopsis thaliana: a survey for genes involved in isoprenoid and chlorophyll metabolism. DOI: 10.1023/a:1023005504702 ; PMID: 12777052
- The age of the Arabidopsis thaliana genome duplication. DOI: 10.1023/a:1023001130337 ; PMID: 12777046
- Inactivation of the chloroplast ATP synthase gamma subunit results in high non-photochemical fluorescence quenching and altered nuclear gene expression in Arabidopsis thaliana. DOI: 10.1074/jbc.M308435200 ; PMID: 14576160
- Definition and interactions of a positive regulatory element of the Arabidopsis INNER NO OUTER promoter. DOI: 10.1046/j.1365-313x.2003.01971.x ; PMID: 14731261
- Gene expression profiling of the tetrapyrrole metabolic pathway in Arabidopsis with a mini-array system. DOI: 10.1104/pp.104.042408 ; PMID: 15326282
- Identification of a vinyl reductase gene for chlorophyll synthesis in Arabidopsis thaliana and implications for the evolution of Prochlorococcus species. DOI: 10.1105/tpc.104.027276 ; PMID: 15632054
- Genome-wide analysis of Arabidopsis responsive transcriptome to nitrogen limitation and its regulation by the ubiquitin ligase gene NLA. DOI: 10.1007/s11103-007-9241-0 ; PMID: 17885809
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Systems analysis of seed filling in Arabidopsis: using general linear modeling to assess concordance of transcript and protein expression. DOI: 10.1104/pp.109.152413 ; PMID: 20118269
- Mutations in Plastidial 5-Aminolevulinic Acid Biosynthesis Genes Suppress a Pleiotropic Defect in Shoot Development of a Mitochondrial GABA Shunt Mutant in Arabidopsis. DOI: 10.1093/pcp/pcv050 ; PMID: 25840087
- Endogenous Arabidopsis messenger RNAs transported to distant tissues. DOI: 10.1038/nplants.2015.25 ; PMID: 27247031
- The Arabidopsis glutamyl-tRNA reductase (GluTR) forms a ternary complex with FLU and GluTR-binding protein. DOI: 10.1038/srep19756 ; PMID: 26794057
- Transcriptional Regulation of Tetrapyrrole Biosynthesis in Arabidopsis thaliana. DOI: 10.3389/fpls.2016.01811 ; PMID: 27990150
- Glutamate 1-semialdehyde aminotransferase is connected to GluTR by GluTR-binding protein and contributes to the rate-limiting step of 5-aminolevulinic acid synthesis. DOI: 10.1093/plcell/koac237 ; PMID: 35972388
- Shade represses photosynthetic genes by disrupting the DNA binding of GOLDEN2-LIKE1. DOI: 10.1093/plphys/kiad029 ; PMID: 36702576
- Light regulation of chlorophyll biosynthesis at the level of 5-aminolevulinate formation in Arabidopsis. DOI: 10.1105/tpc.6.2.265 ; PMID: 7908550
- Proteomic study of the Arabidopsis thaliana chloroplastic envelope membrane utilizing alternatives to traditional two-dimensional electrophoresis. DOI: 10.1021/pr034025j ; PMID: 12938931
- The Arabidopsis thaliana chloroplast proteome reveals pathway abundance and novel protein functions. DOI: 10.1016/j.cub.2004.02.039 ; PMID: 15028209
- Sorting signals, N-terminal modifications and abundance of the chloroplast proteome. DOI: 10.1371/journal.pone.0001994 ; PMID: 18431481
- Quantitative proteomics of a chloroplast SRP54 sorting mutant and its genetic interactions with CLPC1 in Arabidopsis. DOI: 10.1104/pp.108.124545 ; PMID: 18633119
- The oligomeric stromal proteome of Arabidopsis thaliana chloroplasts. DOI: 10.1074/mcp.M500180-MCP200 ; PMID: 16207701
- Analysis of protein complexes in Arabidopsis leaves using size exclusion chromatography and label-free protein correlation profiling. DOI: 10.1016/j.jprot.2017.06.004 ; PMID: 28627464
Gene Resources
- UniProt: A0A178VHC7
- EMBL: CACRSJ010000106, LUHQ01000003
- AlphaFoldDB: A0A178VHC7
- EnsemblPlants: AT3G48730.1
- Gramene: AT3G48730.1
- KEGG: ath:AT3G48730
- Orthologous matrix: RRCIKMS
- ExpressionAtlas: AT3G48730
- InterPro: IPR004639, IPR005814, IPR015421
- PANTHER: PTHR43713, PTHR43713:SF3
- SUPFAM: SSF53383
- PROSITE: PS00600
- Gene3D: 3.40.640.10, 3.90.1150.10
- SWISS-MODEL: A0A178VHC7
- Conserved Domain Database: cd00610
Homologs
- Gossypium hirsutum Gh_A09G0861
- Oryza sativa OsOAT, Osh36;OsAMTR1, Osl2, OsGABA-T
- Triticum aestivum TaOAT-5BL, TaOAT-5DL, TaOAT-5AL-2
Sequences
cDNA Sequence
- >AT3G48730.1
ATTTAAACCACCGGGTCGGCTCCATCTAAAATCTGAAGATCATCTCCGCCTTATCTTGTTGACTATCTCTGTACTACTTACGAGCGCAAGTGAGAGAGTAACAGAGAAACGTAGAGATATAGCAAAATGGCTGCGACGCTTACTGGATCAGGGATTGCTCTAGGGTTTTCGTGCTCCGCAAAGTTCTCTAAGAGAGCTTCTTCGTCGTCCAACCGTCGCTGCATCAAGATGTCGGTTTCGGTAGAGGAGAAGACGAAGAAATTCACTCTTCAGAAATCTGAGGAAGCTTTCAATGCTGCGAAGAACTTAATGCCTGGAGGTGTGAACTCACCTGTACGTGCTTTCAAATCTGTTGGTGGACAACCAGTGGTGATGGATTCTGCAAAGGGCTCACGAATAAGAGACATTGATGGAAATGAATACATTGACTATGTTGGATCTTGGGGACCTGCTATAATTGGTCATGCTGATGATGAGGTTCTTGCTGCTTTGGCTGAGACAATGAAGAAAGGAACAAGCTTTGGTGCTCCTTGTCTCTTAGAGAATGTTCTTGCTGAGATGGTGATTTCAGCTGTTCCAAGTATTGAAATGGTTCGGTTTGTTAACTCCGGTACAGAGGCATGTATGGGTGTGCTACGTCTTGCTCGTGCCTTCACAGGGAAACAAAAGTTCATCAAGTTTGAAGGTTGTTATCATGGTCATGCAAACTCTTTCCTTGTCAAAGCAGGTAGTGGTGTAGCTACTTTGGGTCTACCTGACTCGCCTGGGGTCCCCAAAGCAGCTACTTCAGATACTTTAACAGCTCCATACAATGATATTGCTGCTGTTGAGAAGCTTTTTGAGGCAAACAAAGGAGAGATTGCTGCCATCATTCTTGAACCTGTTGTTGGTAACTCGGGTTTTATTACACCTAAACCAGAGTTCATTGAGGGAATACGCCGGATCACTAAAGACAATGGTGCTCTTCTTATTTTCGATGAAGTCATGACTGGTTTTCGTTTAGCCTATGGTGGAGCTCAAGAATACTTTGGAATCACACCTGACTTAACAACTCTTGGGAAAATCATCGGTGGTGGTCTTCCTGTGGGAGCATACGGTGGAAGAAGAGACATCATGGAAATGGTTGCACCCGCAGGACCGATGTATCAAGCTGGTACGCTAAGTGGTAATCCGTTGGCTATGACAGCGGGTATACACACGCTGAAGCGGTTAAGTCAGCCAGGGACATATGAATACTTAGACAAGATCACAAAAGAGCTTACAAATGGGATACTAGAAGCCGGGAAGAAAACCGGGCATGCGATGTGTGGCGGTTACATAAGCGGGATGTTCGGTTTCTTCTTCACGGAAGGACCCGTCTATGATTTCTCGGATGCAAAGAAGAGTGATACAGAGAAGTTTGGAAAGTTTTTCAGAGGAATGTTGGAAGAAGGTGTCTACTTGGCACCTTCTCAATTCGAGGCCGGTTTTACTAGCTTGGCTCACACTTCAGAAGACATCCAATTCACTATCGCAGCGGCCGAGAAGGTTCTAAGTCGGCTCTAAAATGTCTCTGGAAGCTTCCAGGGAACCATGAATGTATTTGAAATTTTTTGATGTAGAGAAAATTAGATTCAATTGAGAGCAAGCAAGCAATCTCACAAAATTTAACTGTGGTAAGAAAAGTCAAAATGTCTATGAAGATTTGTTGACTTTTTAAAAAGAGTTCTTGCTTTGCGTTAACGTCTTACAAATCACACAGAATGATTTCTATTGCAACACACTTTTTCATCA
CDS Sequence
- >AT3G48730.1
ATGGCTGCGACGCTTACTGGATCAGGGATTGCTCTAGGGTTTTCGTGCTCCGCAAAGTTCTCTAAGAGAGCTTCTTCGTCGTCCAACCGTCGCTGCATCAAGATGTCGGTTTCGGTAGAGGAGAAGACGAAGAAATTCACTCTTCAGAAATCTGAGGAAGCTTTCAATGCTGCGAAGAACTTAATGCCTGGAGGTGTGAACTCACCTGTACGTGCTTTCAAATCTGTTGGTGGACAACCAGTGGTGATGGATTCTGCAAAGGGCTCACGAATAAGAGACATTGATGGAAATGAATACATTGACTATGTTGGATCTTGGGGACCTGCTATAATTGGTCATGCTGATGATGAGGTTCTTGCTGCTTTGGCTGAGACAATGAAGAAAGGAACAAGCTTTGGTGCTCCTTGTCTCTTAGAGAATGTTCTTGCTGAGATGGTGATTTCAGCTGTTCCAAGTATTGAAATGGTTCGGTTTGTTAACTCCGGTACAGAGGCATGTATGGGTGTGCTACGTCTTGCTCGTGCCTTCACAGGGAAACAAAAGTTCATCAAGTTTGAAGGTTGTTATCATGGTCATGCAAACTCTTTCCTTGTCAAAGCAGGTAGTGGTGTAGCTACTTTGGGTCTACCTGACTCGCCTGGGGTCCCCAAAGCAGCTACTTCAGATACTTTAACAGCTCCATACAATGATATTGCTGCTGTTGAGAAGCTTTTTGAGGCAAACAAAGGAGAGATTGCTGCCATCATTCTTGAACCTGTTGTTGGTAACTCGGGTTTTATTACACCTAAACCAGAGTTCATTGAGGGAATACGCCGGATCACTAAAGACAATGGTGCTCTTCTTATTTTCGATGAAGTCATGACTGGTTTTCGTTTAGCCTATGGTGGAGCTCAAGAATACTTTGGAATCACACCTGACTTAACAACTCTTGGGAAAATCATCGGTGGTGGTCTTCCTGTGGGAGCATACGGTGGAAGAAGAGACATCATGGAAATGGTTGCACCCGCAGGACCGATGTATCAAGCTGGTACGCTAAGTGGTAATCCGTTGGCTATGACAGCGGGTATACACACGCTGAAGCGGTTAAGTCAGCCAGGGACATATGAATACTTAGACAAGATCACAAAAGAGCTTACAAATGGGATACTAGAAGCCGGGAAGAAAACCGGGCATGCGATGTGTGGCGGTTACATAAGCGGGATGTTCGGTTTCTTCTTCACGGAAGGACCCGTCTATGATTTCTCGGATGCAAAGAAGAGTGATACAGAGAAGTTTGGAAAGTTTTTCAGAGGAATGTTGGAAGAAGGTGTCTACTTGGCACCTTCTCAATTCGAGGCCGGTTTTACTAGCTTGGCTCACACTTCAGAAGACATCCAATTCACTATCGCAGCGGCCGAGAAGGTTCTAAGTCGGCTCTAA
Protein Sequence
- >AT3G48730.1
MAATLTGSGIALGFSCSAKFSKRASSSSNRRCIKMSVSVEEKTKKFTLQKSEEAFNAAKNLMPGGVNSPVRAFKSVGGQPVVMDSAKGSRIRDIDGNEYIDYVGSWGPAIIGHADDEVLAALAETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGKQKFIKFEGCYHGHANSFLVKAGSGVATLGLPDSPGVPKAATSDTLTAPYNDIAAVEKLFEANKGEIAAIILEPVVGNSGFITPKPEFIEGIRRITKDNGALLIFDEVMTGFRLAYGGAQEYFGITPDLTTLGKIIGGGLPVGAYGGRRDIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLSQPGTYEYLDKITKELTNGILEAGKKTGHAMCGGYISGMFGFFFTEGPVYDFSDAKKSDTEKFGKFFRGMLEEGVYLAPSQFEAGFTSLAHTSEDIQFTIAAAEKVLSRL