Gene Details:
- Gene ID: AT3G48610
- Gene Symbol: NPC6
- Gene Name: non-specific phospholipase C6
- Description: non-specific phospholipase C6;(source:Araport11)
- TAIR Accession: locus:2114470
- Genome: Araport11_genome_release
- Species: Arabidopsis thaliana
Transcripts:
Plant Ontology Annotations:
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
Gene Ontology:
- GO:0009395 — acts upstream of or within — phospholipid catabolic process
- GO:0005886 — located in — plasma membrane
- GO:0009507 — located in — chloroplast
- GO:0009395 — involved in — phospholipid catabolic process
- GO:0048364 — acts upstream of or within — root development
- GO:0004629 — enables — phospholipase C activity
- GO:0048229 — acts upstream of or within — gametophyte development
Germplasm Phenotype:
- npc2& —
Function-related keywords:
- shoot axis apex , leaf lamina base , root , shoot system , plant embryo , vascular leaf , stamen , sepal , flower , inflorescence flower pedicel , cotyledon , petiole , hypocotyl , leaf apex , collective leaf structure , pollen
Literature:
- A novel phosphatidylcholine-hydrolyzing phospholipase C induced by phosphate starvation in Arabidopsis. DOI: 10.1074/jbc.M408799200 ; PMID: 15618226
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Plant phosphatidylcholine-hydrolyzing phospholipases C NPC3 and NPC4 with roles in root development and brassinolide signaling in Arabidopsis thaliana. DOI: 10.1093/mp/ssq005 ; PMID: 20507939
- Nonspecific phospholipase C NPC4 promotes responses to abscisic acid and tolerance to hyperosmotic stress in Arabidopsis. DOI: 10.1105/tpc.109.071720 ; PMID: 20699393
- The plant non-specific phospholipase C gene family. Novel competitors in lipid signalling. DOI: 10.1016/j.plipres.2012.09.001 ; PMID: 23089468
- Acyl-lipid metabolism. DOI: 10.1199/tab.0161 ; PMID: 23505340
- Arabidopsis non-specific phospholipase C1: characterization and its involvement in response to heat stress. DOI: 10.3389/fpls.2015.00928 ; PMID: 26581502
- A pair of nonspecific phospholipases C, NPC2 and NPC6, are involved in gametophyte development and glycerolipid metabolism in Arabidopsis. DOI: 10.1111/nph.15147 ; PMID: 29655284
- Non-specific phospholipases C, NPC2 and NPC6, are required for root growth in Arabidopsis. DOI: 10.1111/tpj.14494 ; PMID: 31400172
- Non-specific phospholipases C2 and C6 redundantly function in pollen tube growth via triacylglycerol production in Arabidopsis. DOI: 10.1111/tpj.15172 ; PMID: 33506578
Sequences:
cDNA Sequence
- >AT3G48610.1
AAGCAGTAAATAGACACCACAGCTTTTTTGTTCTTGCTCTCTACACTTCACATTTACCCAAAATCTTTATAATACTATATATTTAAAACTTTTTATCTTTTTGTATTTTGGTTACAAAGAGACAATTATCTCTCCACTGTCTTTATGTTCTTCTTTCATGTAACCAATCTAAGGCAAAACAAAACCACAGACACAAATTCTACACCAAAAGCTTAACCAGATTTTTCCCAAGAAAAAACCCATCCATGAAACCATCATCAGCTTCAAGATTTTCTTTAACTTTCTCACACTTTCTCACACTCTACTGTCTTCTCACACAAACACATGTAGCTCAAGGATCTCATCAATGGCAATCACCAATCAAAACCGTCGTCGTTTTAGTGTTGGAGAATCGATCTTTCGATCATCTCTTAGGATGGATGAAGAACTCAGTAAACCCGACAATAAACGGTGTAACGGGTCAAGAATGTAACCCGGTTCCGAATTCTACACAAACTATATGTTTCACTAGTGATGCTGAGTTTGTGGATCCGGATCCGGGTCATTCGTTTGAAGCTGTTGAGCAACAAGTATTCGGGTCTGGGCCGGGTCAGATCCCGTCCATGATGGGTTTCGTTGAGCAAGCGCTTTCCATGCCGGGAAATTTGTCGGAGACTGTAATGAAAGGCTTTAGGCCTGAAGCTGTTCCGGTTTATGCTGAGCTGGTTAAGGAATTCGCTGTGTTCGACCGGTGGTTTTCTTCAATTCCCGGTCCGACTCAACCAAACCGGTTATTTGTCTATTCGGCTACCTCACATGGTTCCACTAGCCATGTCAAGAAACAACTCGCTCAAGGGTATCCACAGAAGACGATATTTGATTCGCTTCATAGCAACGACATCGACTTCGGAATATACTTTCAGAATATTCCGACCACATTATTCTACCGTAATCTCCGACAGCTAAAGTACATTTTCAATTTGCATCAATACGATTTGAAATTCAAGAAAGACGCGGCCAAAGGAAAGTTACCGAGCTTAACCGTAATCGAACCGAGGTATTTCGATCTCAAAGGTTTACCGGCTAACGATGATCACCCGTCGCATGACGTGGCTAACGGTCAAAAGCTGGTTAAAGAAGTGTACGAGGCACTTAGGTCGAGTCCACAGTGGAACGAGACGCTCCTAGTTATAACCTATGATGAGCATGGTGGGTTCTATGATCACGTCAAGACTCCTTATGTCGGTATACCAAATCCCGATGGGAATACTGGACCGGCTCCTGGTTTCTTTAAATTCGACCGGTTAGGTGTTCGTGTTCCTACCATTATGGTTTCGCCTTGGATTCAAAAAGGAACCGTCGTAAGTGAAGCAAAAGGACCAACAGAGAGCTCAGAGTACGAGCATTCATCAATACCAGCGACAATCAAGAAACTCTTCAATCTCTCTTCCAATTTCTTAACACATAGAGATGCATGGGCTGCTACTTTCGAAGACGTTGTATCTCACTTAACCACTCCTCGAACCGATTGTCCCATGACTCTACCTGAAGTTGCACCTATGAGAGCCACTGAGCCTAAAGAAGACGCTGCTCTTTCTGAGTTTCAAGGTGAAGTGGTTCAGCTTGCAGCGGTTCTCAATGGTGATCACTTCCTCAGTAGCTTCCCGGAAGAAATTGGAAAGAAGATGACTGTGAAACAAGCTCATGAGTATGTCAAAGGAGCTACTTCTCGGTTCATTAGAGCTAGTAAAGAGGCAATGAAGCTTGGTGCCGATAAATCTGCTATTGTCGATATGCGATCTTCGCTCACTACACGGCCACACAACTGATTAAAAATCTTGTTTGCATTCGTCTTCCTATGTTTTGATCTGAAAATGTGTGATTTTATGTATGGAAACTAGAATTGAGGAACAAAGAAATAGACAAAATTCATTGTTAATGTTAGTGATATGTTGAGCAATCGAAAGATCTTCATAAACTCCCAATATAACTGAAGCCCAATTAGGC
CDS Sequence
- >AT3G48610.1
ATGAAACCATCATCAGCTTCAAGATTTTCTTTAACTTTCTCACACTTTCTCACACTCTACTGTCTTCTCACACAAACACATGTAGCTCAAGGATCTCATCAATGGCAATCACCAATCAAAACCGTCGTCGTTTTAGTGTTGGAGAATCGATCTTTCGATCATCTCTTAGGATGGATGAAGAACTCAGTAAACCCGACAATAAACGGTGTAACGGGTCAAGAATGTAACCCGGTTCCGAATTCTACACAAACTATATGTTTCACTAGTGATGCTGAGTTTGTGGATCCGGATCCGGGTCATTCGTTTGAAGCTGTTGAGCAACAAGTATTCGGGTCTGGGCCGGGTCAGATCCCGTCCATGATGGGTTTCGTTGAGCAAGCGCTTTCCATGCCGGGAAATTTGTCGGAGACTGTAATGAAAGGCTTTAGGCCTGAAGCTGTTCCGGTTTATGCTGAGCTGGTTAAGGAATTCGCTGTGTTCGACCGGTGGTTTTCTTCAATTCCCGGTCCGACTCAACCAAACCGGTTATTTGTCTATTCGGCTACCTCACATGGTTCCACTAGCCATGTCAAGAAACAACTCGCTCAAGGGTATCCACAGAAGACGATATTTGATTCGCTTCATAGCAACGACATCGACTTCGGAATATACTTTCAGAATATTCCGACCACATTATTCTACCGTAATCTCCGACAGCTAAAGTACATTTTCAATTTGCATCAATACGATTTGAAATTCAAGAAAGACGCGGCCAAAGGAAAGTTACCGAGCTTAACCGTAATCGAACCGAGGTATTTCGATCTCAAAGGTTTACCGGCTAACGATGATCACCCGTCGCATGACGTGGCTAACGGTCAAAAGCTGGTTAAAGAAGTGTACGAGGCACTTAGGTCGAGTCCACAGTGGAACGAGACGCTCCTAGTTATAACCTATGATGAGCATGGTGGGTTCTATGATCACGTCAAGACTCCTTATGTCGGTATACCAAATCCCGATGGGAATACTGGACCGGCTCCTGGTTTCTTTAAATTCGACCGGTTAGGTGTTCGTGTTCCTACCATTATGGTTTCGCCTTGGATTCAAAAAGGAACCGTCGTAAGTGAAGCAAAAGGACCAACAGAGAGCTCAGAGTACGAGCATTCATCAATACCAGCGACAATCAAGAAACTCTTCAATCTCTCTTCCAATTTCTTAACACATAGAGATGCATGGGCTGCTACTTTCGAAGACGTTGTATCTCACTTAACCACTCCTCGAACCGATTGTCCCATGACTCTACCTGAAGTTGCACCTATGAGAGCCACTGAGCCTAAAGAAGACGCTGCTCTTTCTGAGTTTCAAGGTGAAGTGGTTCAGCTTGCAGCGGTTCTCAATGGTGATCACTTCCTCAGTAGCTTCCCGGAAGAAATTGGAAAGAAGATGACTGTGAAACAAGCTCATGAGTATGTCAAAGGAGCTACTTCTCGGTTCATTAGAGCTAGTAAAGAGGCAATGAAGCTTGGTGCCGATAAATCTGCTATTGTCGATATGCGATCTTCGCTCACTACACGGCCACACAACTGA
Protein Sequence
- >AT3G48610.1
MKPSSASRFSLTFSHFLTLYCLLTQTHVAQGSHQWQSPIKTVVVLVLENRSFDHLLGWMKNSVNPTINGVTGQECNPVPNSTQTICFTSDAEFVDPDPGHSFEAVEQQVFGSGPGQIPSMMGFVEQALSMPGNLSETVMKGFRPEAVPVYAELVKEFAVFDRWFSSIPGPTQPNRLFVYSATSHGSTSHVKKQLAQGYPQKTIFDSLHSNDIDFGIYFQNIPTTLFYRNLRQLKYIFNLHQYDLKFKKDAAKGKLPSLTVIEPRYFDLKGLPANDDHPSHDVANGQKLVKEVYEALRSSPQWNETLLVITYDEHGGFYDHVKTPYVGIPNPDGNTGPAPGFFKFDRLGVRVPTIMVSPWIQKGTVVSEAKGPTESSEYEHSSIPATIKKLFNLSSNFLTHRDAWAATFEDVVSHLTTPRTDCPMTLPEVAPMRATEPKEDAALSEFQGEVVQLAAVLNGDHFLSSFPEEIGKKMTVKQAHEYVKGATSRFIRASKEAMKLGADKSAIVDMRSSLTTRPHN