Information report for AT3G48590
Gene Details
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Functional Descriptions
- GO:0005515 — enables — protein binding
- GO:0000981 — enables — DNA-binding transcription factor activity, RNA polymerase II-specific
- GO:0005634 — located in — nucleus
- GO:0016602 — part of — CCAAT-binding factor complex
- GO:2000306 — acts upstream of or within — positive regulation of photomorphogenesis
- GO:0003700 — enables — DNA-binding transcription factor activity
- GO:0045893 — acts upstream of or within — positive regulation of DNA-templated transcription
- GO:0006355 — acts upstream of or within — regulation of DNA-templated transcription
- GO:0006357 — involved in — regulation of transcription by RNA polymerase II
- GO:0005634 — is active in — nucleus
- GO:0046982 — enables — protein heterodimerization activity
- GO:0005829 — located in — cytosol
- GO:0000978 — contributes to — RNA polymerase II cis-regulatory region sequence-specific DNA binding
Functional Keywords
Literature and News
- Multiple genes encoding the conserved CCAAT-box transcription factor complex are expressed in Arabidopsis. DOI: 10.1104/pp.117.3.1015 ; PMID: 9662544
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- The CCAAT binding factor can mediate interactions between CONSTANS-like proteins and DNA. DOI: 10.1111/j.1365-313X.2006.02706.x ; PMID: 16623906
- CONSTANS and the CCAAT box binding complex share a functionally important domain and interact to regulate flowering of Arabidopsis. DOI: 10.1105/tpc.106.043299 ; PMID: 17138697
- Arabidopsis NF-YB subunits LEC1 and LEC1-LIKE activate transcription by interacting with seed-specific ABRE-binding factors. DOI: 10.1111/j.1365-313X.2009.03817.x ; PMID: 19207209
- AtHAP5A modulates freezing stress resistance in Arabidopsis through binding to CCAAT motif of AtXTH21. DOI: 10.1111/nph.12812 ; PMID: 24739069
- AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. DOI: 10.4161/psb.29109 ; PMID: 25763489
- Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. DOI: 10.1016/j.molp.2016.11.007 ; PMID: 27876642
- The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. DOI: 10.3389/fpls.2016.02045 ; PMID: 28119722
- Sequence analysis and protein interactions of Arabidopsis CIA2 and CIL proteins. DOI: 10.1186/s40529-020-00297-z ; PMID: 32556735
- Arabidopsis NF-YCs play dual roles in repressing brassinosteroid biosynthesis and signaling during light-regulated hypocotyl elongation. DOI: 10.1093/plcell/koab112 ; PMID: 33871651
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
Gene Resources
- UniProt: A0A178V5Y7
- EMBL: CACRSJ010000106, CACSHJ010000089, LUHQ01000003
- AlphaFoldDB: A0A178V5Y7
- EnsemblPlants: AT3G48590.1
- Gramene: AT3G48590.1
- KEGG: ath:AT3G48590
- Orthologous matrix: EDNSYAG
- ExpressionAtlas: AT3G48590
- InterPro: IPR007125, IPR009072, IPR050568
- PANTHER: PTHR10252, PTHR10252:SF39
- SUPFAM: SSF47113
- Gene3D: 1.10.20.10
- OrthoDB: A0A178V5Y7
- SWISS-MODEL: A0A178V5Y7
- Conserved Domain Database: cd22908
Homologs
- Citrus sinensis orange1.1g026901m
- Cucumis melo MELO3C026204P1
- Cucumis sativus Cucsa.157300.1
Sequences
cDNA Sequence
- >AT3G48590.1
TATCCACTTGTACCCCAATCCCTTTGGCAAAAACTTGTCACGACCTTTTTGATCCAAAAATCAAAATCCAAAACCGACCAATGGATACCAACAACCAGCAACCACCTCCCTCCGCCGCCGGAATCCCTCCTCCACCACCTGGAACCACCATCTCCGCCGCAGGAGGAGGAGCTTCTTACCACCACCTTCTCCAACAACAACAACAACAGCTCCAACTATTCTGGACCTACCAACGCCAAGAGATCGAACAAGTTAACGATTTCAAAAACCATCAGCTTCCACTAGCTAGGATAAAAAAGATCATGAAAGCCGATGAAGATGTTCGTATGATCTCCGCAGAAGCACCGATTCTCTTCGCGAAAGCTTGTGAGCTTTTCATTCTCGAGCTCACGATCAGATCTTGGCTTCACGCTGAGGAGAATAAACGTCGTACGCTTCAGAAAAACGATATCGCTGCTGCGATTACTAGGACTGATATCTTCGATTTCCTTGTTGATATTGTTCCTAGAGATGAGATTAAGGACGAAGCCGCAGTCCTCGGTGGTGGAATGGTGGTGGCTCCTACCGCGAGCGGCGTGCCTTACTATTATCCGCCGATGGGACAACCAGCTGGTCCTGGAGGGATGATGATTGGGAGACCAGCTATGGATCCGAATGGTGTTTATGTCCAGCCTCCGTCTCAGGCGTGGCAGAGTGTTTGGCAGACTTCGACGGGGACGGGAGATGATGTCTCTTATGGTAGTGGTGGAAGTTCCGGTCAAGGGAATCTCGACGGCCAAGGTTAAGCTCAGAGTATTCCAGATGATGCTTGACCTGCTTGAAGATAGCAGATATTAGTCGACCTCGCCTTGAATTTTGGATGTGTTTGATAGATTATGCCTAAATTCAATGAAAAGGCTTCGTTAAAGAAGAGTAAAAAAAACTCTTGTTTCTCTCTGTTAACGTATATGTTATTGTAGCAAAACCATCATTGCTGCGACTTAGCCTAACTATATATAATCTAATGTGCAGTTTCTATTGTATGCTTCTTTCCGATTTTTTCTCATATTTGACTTATCTTGATGTCTGAGAAAATGCAGTCTTGT
CDS Sequence
- >AT3G48590.1
ATGGATACCAACAACCAGCAACCACCTCCCTCCGCCGCCGGAATCCCTCCTCCACCACCTGGAACCACCATCTCCGCCGCAGGAGGAGGAGCTTCTTACCACCACCTTCTCCAACAACAACAACAACAGCTCCAACTATTCTGGACCTACCAACGCCAAGAGATCGAACAAGTTAACGATTTCAAAAACCATCAGCTTCCACTAGCTAGGATAAAAAAGATCATGAAAGCCGATGAAGATGTTCGTATGATCTCCGCAGAAGCACCGATTCTCTTCGCGAAAGCTTGTGAGCTTTTCATTCTCGAGCTCACGATCAGATCTTGGCTTCACGCTGAGGAGAATAAACGTCGTACGCTTCAGAAAAACGATATCGCTGCTGCGATTACTAGGACTGATATCTTCGATTTCCTTGTTGATATTGTTCCTAGAGATGAGATTAAGGACGAAGCCGCAGTCCTCGGTGGTGGAATGGTGGTGGCTCCTACCGCGAGCGGCGTGCCTTACTATTATCCGCCGATGGGACAACCAGCTGGTCCTGGAGGGATGATGATTGGGAGACCAGCTATGGATCCGAATGGTGTTTATGTCCAGCCTCCGTCTCAGGCGTGGCAGAGTGTTTGGCAGACTTCGACGGGGACGGGAGATGATGTCTCTTATGGTAGTGGTGGAAGTTCCGGTCAAGGGAATCTCGACGGCCAAGGTTAA
Protein Sequence
- >AT3G48590.1
MDTNNQQPPPSAAGIPPPPPGTTISAAGGGASYHHLLQQQQQQLQLFWTYQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAAVLGGGMVVAPTASGVPYYYPPMGQPAGPGGMMIGRPAMDPNGVYVQPPSQAWQSVWQTSTGTGDDVSYGSGGSSGQGNLDGQG