Information report for AT3G48580
Gene Details
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Functional Descriptions
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- GO:0044042 — involved in — glucan metabolic process
- GO:0030247 — enables — polysaccharide binding
- GO:0009737 — acts upstream of or within — response to abscisic acid
- GO:0010411 — involved in — xyloglucan metabolic process
- GO:0042546 — involved in — cell wall biogenesis
- GO:0016762 — enables — xyloglucan:xyloglucosyl transferase activity
- GO:0009414 — acts upstream of or within — response to water deprivation
- GO:0004553 — enables — hydrolase activity, hydrolyzing O-glycosyl compounds
- GO:0019752 — acts upstream of or within — carboxylic acid metabolic process
- GO:0009505 — located in — plant-type cell wall
- GO:0002213 — acts upstream of or within — defense response to insect
- GO:0042440 — acts upstream of or within — pigment metabolic process
Functional Keywords
Literature and News
- A comprehensive expression analysis of all members of a gene family encoding cell-wall enzymes allowed us to predict cis-regulatory regions involved in cell-wall construction in specific organs of Arabidopsis. DOI: 10.1093/pcp/pce154 ; PMID: 11673616
- The XTH family of enzymes involved in xyloglucan endotransglucosylation and endohydrolysis: current perspectives and a new unifying nomenclature. DOI: 10.1093/pcp/pcf171 ; PMID: 12514239
- and darkness-regulated Arabidopsis genes: a focus on calmodulin-like and XTH genes. DOI: 10.1111/j.1469-8137.2004.01238.x ; PMID: 15720654
- A proteomic approach to apoplastic proteins involved in cell wall regeneration in protoplasts of Arabidopsis suspension-cultured cells. DOI: 10.1093/pcp/pci089 ; PMID: 15769804
- Identification of transcribed sequences in Arabidopsis thaliana by using high-resolution genome tiling arrays. DOI: 10.1073/pnas.0408203102 ; PMID: 15755812
- Analysis of the female gametophyte transcriptome of Arabidopsis by comparative expression profiling. DOI: 10.1104/pp.105.067314 ; PMID: 16299181
- Characterization of a novel putative zinc finger gene MIF1: involvement in multiple hormonal regulation of Arabidopsis development. DOI: 10.1111/j.1365-313X.2005.02626.x ; PMID: 16412086
- Computational and experimental analysis identifies Arabidopsis genes specifically expressed during early seed development. DOI: 10.1186/1471-2164-7-38 ; PMID: 16504176
- Delayed embryo development in the ARABIDOPSIS TREHALOSE-6-PHOSPHATE SYNTHASE 1 mutant is associated with altered cell wall structure, decreased cell division and starch accumulation. DOI: 10.1111/j.1365-313X.2006.02662.x ; PMID: 16553896
- Light quality-mediated petiole elongation in Arabidopsis during shade avoidance involves cell wall modification by xyloglucan endotransglucosylase/hydrolases. DOI: 10.1104/pp.110.162057 ; PMID: 20688978
- Differentiation of Arabidopsis guard cells: analysis of the networks incorporating the basic helix-loop-helix transcription factor, FAMA. DOI: 10.1104/pp.110.167718 ; PMID: 21245191
- Ride to cell wall: Arabidopsis XTH11, XTH29 and XTH33 exhibit different secretion pathways and responses to heat and drought stress. DOI: 10.1111/tpj.15301 ; PMID: 33932060
Gene Resources
- UniProt: A0A654FFW9
- EMBL: CACRSJ010000106
- AlphaFoldDB: A0A654FFW9
- EnsemblPlants: AT3G48580.1
- Gramene: AT3G48580.1
- KEGG: ath:AT3G48580
- Orthologous matrix: EMPYTAE
- ExpressionAtlas: AT3G48580
- InterPro: IPR000757, IPR008264, IPR010713
- PANTHER: PTHR31062
- SUPFAM: SSF49899
- PROSITE: PS51762
- Gene3D: 2.60.120.200
- SWISS-MODEL: A0A654FFW9
Homologs
- Gossypium arboreum Cotton_A_39858_BGI-A2_v1.0
- Oryza sativa OsXTR1;XTH2, OsXTH8
- Solanum melongena Sme2.5_00096.1_g00018.1
Sequences
cDNA Sequence
- >AT3G48580.1
ATAGACTATTTGGTGAAAAAATACAACGTAACGTACGTGGCTGCTCTAAGCCTATATAACATAGCCCAAGAGAGTCGTGTTCTAATGTGATTAAGTAAAGTGAGGGAGAAGCAACGAGAGATAGAGATAGAGAGATCAAGATGAGAGGATCTGATCAGAAGATTCTACTGATGGTTATGGTGGTTGTAGCAGTTGTAGCTGCGGCTCAAGGCCAAGAAGAGACTACTGGATTCGTGACATGGGGTAACAATTACTACCAGACATGGGGACATCAAGCTTTGGTTATTAATAAAACCTCTGAGCTCCAGCTCACCCTCGATAAAAACTCTGGGTCCGGGTTTGAATCCCAATTGATTTACGGATCAGGATACTTCAACGTAAGAATCAAGGCACCTCAAACTACGTCTACGGGAGTCATTACTTCCTTCTATTTAATCTCCCGTTCAAGCCGCCATGATGAGCTCTGTTTCCAGATCTTGGGAAAGAATGGGCCACCGTATTTGCTGAATACGAATATGTATCTGTACGGTGAAGGAGGCAAAGATCAGAGGTTTCGTCTCTGGTTTGATCCAACAAAAGATTACCATTCCTACAGTTTTCTTTGGAACCCTAATCAACTTGTGTTTTATGTTGACGATACACCGATCAGGGTGTACAGCAAGAATCCAGATGTTTACTACCCATCGGTGCAGACAATGTTCCTAATGGGAAGTGTGCAAAACGGATCGATAATTGACCCGAAGCAGATGCCTTACATTGCTAAGTTCCAGGCATCAAAGATTGAAGGGTGTAAGACTGAGTTCATGGGAATAGATAAATGCACTGATCCTAAGTTCTGGTGGAATCGCAAACAGCTAAGCTCTAAAGAGAAGACACTGTACCTAAACGCAAGGAAGACGTACCTGGATTATGACTATTGTTCTGACAGACAGCGATATCCAAAGGTGCCTCAAGAATGTGGAAGTTACACTTAGAGAAAGATCAATACCTGTCACAGGGTTAAGCCTACAAAACAATTATCTTGAAAAAATAACTTATGTTACTGTAAGATGCTTTATGATAAGCCTTTTCTATCAAATAACAACATTATTGTCATCAATGCTAGATACATTACTATGTCACGAGTTCATATACAGATACCTATTTACACAGAACCAAGTTGGTTCAG - >AT3G48580.3
ATAGACTATTTGGTGAAAAAATACAACGTAACGTACGTGGCTGCTCTAAGCCTATATAACATAGCCCAAGAGAGTCGTGTTCTAATGTGATTAAGTAAAGTGAGGGAGAAGCAACGAGAGATAGAGATAGAGAGATCAAGATGAGAGGATCTGATCAGAAGATTCTACTGATGGTTATGGTGGTTGTAGCAGTTGTAGCTGCGGCTCAAGGCCAAGAAGAGACTACTGGATTCGTGACATGGGGTAACAATTACTACCAGACATGGGGACATCAAGCTTTGGTTATTAATAAAACCTCTGAGCTCCAGCTCACCCTCGATAAAAACTCTGGGTCCGGGTTTGAATCCCAATTGATTTACGGATCAGGATACTTCAACGTAAGAATCAAGGCACCTCAAACTACGTCTACGGGAGTCATTACTTCCTTCTATTTAATCTCCCGTTCAAGCCGCCATGATGAGCTCTGTTTCCAGATCTTGGGAAAGAATGGGCCACCGTATTTGCTGAATACGAATATGTATCTGTACGGTGAAGGAGGCAAAGATCAGAGGTTTCGTCTCTGGTTTGATCCAACAAAAGATTACCATTCCTACAGTTTTCTTTGGAACCCTAATCAACTTGTGTTTTATGTTGACGATACACCGATCAGGGTGTACAGCAAGAATCCAGATGTTTACTACCCATCGGTGCAGACAATGTTCCTAATGGGAAGTGTGCAAAACGGATCGATAATTGACCCGAAGCAGATGCCTTACATTGCTAAGTTCCAGGCATCAAAGATTGAAGGGTGTAAGACTGAGTTCATGGGAATAGATAAATGCACTGATCCTAAGTTCTGGTGGAATCGCAAACAGCTAAGCTCTAAAGAGAAGACACTGTACCTAAACGCAAGGAAGACGTACCTGGATTATGACTATTGTTCTGACAGACAGCGATATCCAAAGGTGCCTCAAGAATGTGGAAGTTACACTTAGAGAAAGATCAATACCTGTCACAGGGTTAAGCCTACAAAACAATTATCTTGAAAAAATAACTTATGTTACTGTAAGATGCTTTATGATAAGCCTTTTCTATCAAATAACAACATTATTGTCATCAATGCTAGATACATTACTATGTCACGAGTTCATATACAGATACCTATTTACACAGAACCAAGTTGGTTCAG - >AT3G48580.2
ATAGACTATTTGGTGAAAAAATACAACGTAACGTACGTGGCTGCTCTAAGCCTATATAACATAGCCCAAGAGAGTCGTGTTCTAATGTGATTAAGTAAAGTGAGGGAGAAGCAACGAGAGATAGAGATAGAGAGATCAAGATGAGAGGATCTGATCAGAAGATTCTACTGATGGTTATGGTGGTTGTAGCAGTTGTAGCTGCGGCTCAAGGCCAAGAAGAGACTACTGGATTCGTGACATGGGGTAACAATTACTACCAGACATGGGGACATCAAGCTTTGGTTATTAATAAAACCTCTGAGCTCCAGCTCACCCTCGATAAAAACTCTGGGTCCGGGTTTGAATCCCAATTGATTTACGGATCAGGATACTTCAACGTAAGAATCAAGGCACCTCAAACTACGTCTACGGGAGTCATTACTTCCTTCTATTTAATCTCCCGTTCAAGCCGCCATGATGAGCTCTGTTTCCAGATCTTGGGAAAGAATGGGCCACCGTATTTGCTGAATACGAATATGTATCTGTACGGTGAAGGAGGCAAAGATCAGAGGTTTCGTCTCTGGTTTGATCCAACAAAAGATTACCATTCCTACAGTTTTCTTTGGAACCCTAATCAACTTGTGTTTTATGTTGACGATACACCGATCAGGGTGTACAGCAAGAATCCAGATGTTTACTACCCATCGGTGCAGACAATGTTCCTAATGGGAAGTGTGCAAAACGGATCGATAATTGACCCGAAGCAGATGCCTTACATTGCTAAGTTCCAGGCATCAAAGATTGAAGGGTGTAAGACTGAGTTCATGGGAATAGATAAATGCACTGATCCTAAGTTCTGGTGGAATCGCAAACAGCTAAGCTCTAAAGAGAAGACACTGTACCTAAACGCAAGGAAGACGTACCTGGATTATGACTATTGTTCTGACAGACAGCGATATCCAAAGGTGCCTCAAGAATGTGGAAGTTACACTTAGAGAAAGATCAATACCTGTCACAGGGTTAAGCCTACAAAACAATTATCTTGAAAAAATAACTTATGTTACTGTAAGATGCTTTATGATAAGCCTTTTCTATCAAATAACAACATTATTGTCATCAATGCTAGATACATTACTATGTCACGAGTTCATATACAGATACCTATTTACACAGAACCAAGTTGGTTCAG
CDS Sequence
- >AT3G48580.1
ATGAGAGGATCTGATCAGAAGATTCTACTGATGGTTATGGTGGTTGTAGCAGTTGTAGCTGCGGCTCAAGGCCAAGAAGAGACTACTGGATTCGTGACATGGGGTAACAATTACTACCAGACATGGGGACATCAAGCTTTGGTTATTAATAAAACCTCTGAGCTCCAGCTCACCCTCGATAAAAACTCTGGGTCCGGGTTTGAATCCCAATTGATTTACGGATCAGGATACTTCAACGTAAGAATCAAGGCACCTCAAACTACGTCTACGGGAGTCATTACTTCCTTCTATTTAATCTCCCGTTCAAGCCGCCATGATGAGCTCTGTTTCCAGATCTTGGGAAAGAATGGGCCACCGTATTTGCTGAATACGAATATGTATCTGTACGGTGAAGGAGGCAAAGATCAGAGGTTTCGTCTCTGGTTTGATCCAACAAAAGATTACCATTCCTACAGTTTTCTTTGGAACCCTAATCAACTTGTGTTTTATGTTGACGATACACCGATCAGGGTGTACAGCAAGAATCCAGATGTTTACTACCCATCGGTGCAGACAATGTTCCTAATGGGAAGTGTGCAAAACGGATCGATAATTGACCCGAAGCAGATGCCTTACATTGCTAAGTTCCAGGCATCAAAGATTGAAGGGTGTAAGACTGAGTTCATGGGAATAGATAAATGCACTGATCCTAAGTTCTGGTGGAATCGCAAACAGCTAAGCTCTAAAGAGAAGACACTGTACCTAAACGCAAGGAAGACGTACCTGGATTATGACTATTGTTCTGACAGACAGCGATATCCAAAGGTGCCTCAAGAATGTGGAAGTTACACTTAG - >AT3G48580.3
ATGAGAGGATCTGATCAGAAGATTCTACTGATGGTTATGGTGGTTGTAGCAGTTGTAGCTGCGGCTCAAGGCCAAGAAGAGACTACTGGATTCGTGACATGGGGTAACAATTACTACCAGACATGGGGACATCAAGCTTTGGTTATTAATAAAACCTCTGAGCTCCAGCTCACCCTCGATAAAAACTCTGGGTCCGGGTTTGAATCCCAATTGATTTACGGATCAGGATACTTCAACGTAAGAATCAAGGCACCTCAAACTACGTCTACGGGAGTCATTACTTCCTTCTATTTAATCTCCCGTTCAAGCCGCCATGATGAGCTCTGTTTCCAGATCTTGGGAAAGAATGGGCCACCGTATTTGCTGAATACGAATATGTATCTGTACGGTGAAGGAGGCAAAGATCAGAGGTTTCGTCTCTGGTTTGATCCAACAAAAGATTACCATTCCTACAGTTTTCTTTGGAACCCTAATCAACTTGTGTTTTATGTTGACGATACACCGATCAGGGTGTACAGCAAGAATCCAGATGTTTACTACCCATCGGTGCAGACAATGTTCCTAATGGGAAGTGTGCAAAACGGATCGATAATTGACCCGAAGCAGATGCCTTACATTGCTAAGTTCCAGGCATCAAAGATTGAAGGGTGTAAGACTGAGTTCATGGGAATAGATAAATGCACTGATCCTAAGTTCTGGTGGAATCGCAAACAGCTAAGCTCTAAAGAGAAGACACTGTACCTAAACGCAAGGAAGACGTACCTGGATTATGACTATTGTTCTGACAGACAGCGATATCCAAAGGTGCCTCAAGAATGTGGAAGTTACACTTAG - >AT3G48580.2
ATGAGAGGATCTGATCAGAAGATTCTACTGATGGTTATGGTGGTTGTAGCAGTTGTAGCTGCGGCTCAAGGCCAAGAAGAGACTACTGGATTCGTGACATGGGGTAACAATTACTACCAGACATGGGGACATCAAGCTTTGGTTATTAATAAAACCTCTGAGCTCCAGCTCACCCTCGATAAAAACTCTGGGTCCGGGTTTGAATCCCAATTGATTTACGGATCAGGATACTTCAACGTAAGAATCAAGGCACCTCAAACTACGTCTACGGGAGTCATTACTTCCTTCTATTTAATCTCCCGTTCAAGCCGCCATGATGAGCTCTGTTTCCAGATCTTGGGAAAGAATGGGCCACCGTATTTGCTGAATACGAATATGTATCTGTACGGTGAAGGAGGCAAAGATCAGAGGTTTCGTCTCTGGTTTGATCCAACAAAAGATTACCATTCCTACAGTTTTCTTTGGAACCCTAATCAACTTGTGTTTTATGTTGACGATACACCGATCAGGGTGTACAGCAAGAATCCAGATGTTTACTACCCATCGGTGCAGACAATGTTCCTAATGGGAAGTGTGCAAAACGGATCGATAATTGACCCGAAGCAGATGCCTTACATTGCTAAGTTCCAGGCATCAAAGATTGAAGGGTGTAAGACTGAGTTCATGGGAATAGATAAATGCACTGATCCTAAGTTCTGGTGGAATCGCAAACAGCTAAGCTCTAAAGAGAAGACACTGTACCTAAACGCAAGGAAGACGTACCTGGATTATGACTATTGTTCTGACAGACAGCGATATCCAAAGGTGCCTCAAGAATGTGGAAGTTACACTTAG
Protein Sequence
- >AT3G48580.1
MRGSDQKILLMVMVVVAVVAAAQGQEETTGFVTWGNNYYQTWGHQALVINKTSELQLTLDKNSGSGFESQLIYGSGYFNVRIKAPQTTSTGVITSFYLISRSSRHDELCFQILGKNGPPYLLNTNMYLYGEGGKDQRFRLWFDPTKDYHSYSFLWNPNQLVFYVDDTPIRVYSKNPDVYYPSVQTMFLMGSVQNGSIIDPKQMPYIAKFQASKIEGCKTEFMGIDKCTDPKFWWNRKQLSSKEKTLYLNARKTYLDYDYCSDRQRYPKVPQECGSYT - >AT3G48580.3
MRGSDQKILLMVMVVVAVVAAAQGQEETTGFVTWGNNYYQTWGHQALVINKTSELQLTLDKNSGSGFESQLIYGSGYFNVRIKAPQTTSTGVITSFYLISRSSRHDELCFQILGKNGPPYLLNTNMYLYGEGGKDQRFRLWFDPTKDYHSYSFLWNPNQLVFYVDDTPIRVYSKNPDVYYPSVQTMFLMGSVQNGSIIDPKQMPYIAKFQASKIEGCKTEFMGIDKCTDPKFWWNRKQLSSKEKTLYLNARKTYLDYDYCSDRQRYPKVPQECGSYT - >AT3G48580.2
MRGSDQKILLMVMVVVAVVAAAQGQEETTGFVTWGNNYYQTWGHQALVINKTSELQLTLDKNSGSGFESQLIYGSGYFNVRIKAPQTTSTGVITSFYLISRSSRHDELCFQILGKNGPPYLLNTNMYLYGEGGKDQRFRLWFDPTKDYHSYSFLWNPNQLVFYVDDTPIRVYSKNPDVYYPSVQTMFLMGSVQNGSIIDPKQMPYIAKFQASKIEGCKTEFMGIDKCTDPKFWWNRKQLSSKEKTLYLNARKTYLDYDYCSDRQRYPKVPQECGSYT