Information report for AT3G48030
Gene Details
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Functional Descriptions
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- GO:0031625 — enables — ubiquitin protein ligase binding
- GO:0005739 — colocalizes with — mitochondrion
- GO:0005634 — located in — nucleus
Literature and News
- Evaluation and classification of RING-finger domains encoded by the Arabidopsis genome. DOI: 10.1186/gb-2002-3-4-research0016 ; PMID: 11983057
- Functional analysis of the RING-type ubiquitin ligase family of Arabidopsis. DOI: 10.1104/pp.104.052423 ; PMID: 15644464
- Repertoire of plant RING E3 ubiquitin ligases revisited: New groups counting gene families and single genes. DOI: 10.1371/journal.pone.0203442 ; PMID: 30169501
Gene Resources
- UniProt: A0A7G2ESC0
- EMBL: LR881468
- AlphaFoldDB: A0A7G2ESC0
- EnsemblPlants: AT3G48030.1
- Gramene: AT3G48030.1
- KEGG: ath:AT3G48030
- ExpressionAtlas: AT3G48030
- InterPro: IPR001841, IPR007667, IPR013083
- PANTHER: PTHR45768, PTHR45768:SF18
- SUPFAM: SSF57850
- PROSITE: PS50089, PS51503
- Gene3D: 3.30.40.10, 6.10.140.1320
- SWISS-MODEL: A0A7G2ESC0
- Conserved Domain Database: cd16461
Homologs
- Arachis hypogaea arahy.Tifrunner.gnm1.ann1.WB8Z1Y, arahy.Tifrunner.gnm1.ann1.466F5F
- Lactuca sativa gene-LSAT_4X159860
- Lotus japonicus Lj1g0003826
- Manihot esculenta MANES_01G156900
- Musa acuminata Ma08_g13730
- Oryza sativa OsBIRF1, RRF1, RAE3
- Poncirus trifoliata Ptrif.0003s0432
- Triticum aestivum TraesCS5A02G354600
Sequences
cDNA Sequence
- >AT3G48030.1
ATGAGTTCGGTAGAACCAGACATGGAAGATCTGTTCCAGGAGAAGAAGCGTGTCAGGAATCCTCTCGTTCCTCTCGGTGCACTTATGACCGCGGGAGTGCTCACGGCTGGGTTGATTAGTTTCAGAAGAGGCAATTCTCAGTTGGGTCAGGTTTTGATGAGAGCTAGGGTGGTCGTCCAGGGTGCTACTGTCGCTTTAATGGTTGGAACCGGTTATTACTACGGTGATAATCCGTGGAAGAAGTTACTTTTGTCTGAAATCCATGAAACTGAAGCTCTTTCACCTAAATCTTCATCTGCAGCAACACTAACTCTTATGAACCAGAAAGATCCATCTTCAAGCTCTATAGTGTCTGTTTTATGTTTAGTTATCTCTGGTCTTGCTCTTATCATCGTCTTCCTCGGTGTCCTCTACTTGATCTTCAAATTTCTCCGCAAGTCCTCGACTTTATTTCCCATTCCCCATTTCAACTACAACCCAGATCTCTTTTCTTTCTCCTCGCCTCAGCTCCAGCACCTGTTCTTCCTCCATGACTCTGGTCTAGACCAGACTGCCATCGATGCACTTCCAGTGTTCCTCTATGGTAATGTAACCATTAGTCTTGAACAGCCATTCGATTGCGCCGTATGTCTCAATGAGTTCTCTGACACAGACAAGCTCAGACTACTCCCTGTTTGTAGCCATGCTTTCCATCTACACTGTATCGACACATGGCTTCTTTCGAACTCTACTTGCCCTCTCTGCAGAAGATCACTCTCAACCTCAAACGTCTGCTACAACCACTCGGAGACTCTTGTCGCCCCCTTGTCTGGGCATCAGCAGGTGGATGACGGCAAAGCCTCCCTTGCTAAAAGAGTTTTCTCTGTTCGTCTCGGGAGATTCAAAAGCACGAACGAAAGTCAAAGTCAACGACATGATGTCAAAGATGAAATCGGGGTAAGAATGCCAAGAAGATGTTACTCGATGGGCACGCAACAGTATCTCGTATGCGATCAAGATTTTGTGGTGGCTCTGTCTTCGTCTCCTCGTGAGGGAAATATCGGTCGGTAA - >AT3G48030.2
ATGAGTTCGGTAGAACCAGACATGGAAGATCTGTTCCAGGAGAAGAAGCGTGTCAGGAATCCTCTCGTTCCTCTCGGTGCACTTATGACCGCGGGAGTGCTCACGGCTGGGTTGATTAGTTTCAGAAGAGGCAATTCTCAGTTGGGTCAGGTTTTGATGAGAGCTAGGGTGGTCGTCCAGGGTGCTACTGTCGCTTTAATGGTTGGAACCGGTTATTACTACGGTGATAATCCGTGGAAGAAGTTACTTTTGTCTGAAATCCATGAAACTGAAGCTCTTTCACCTAAATCTTCATCTGCAGCAACACTAACTCTTATGAACCAGAAAGATCCATCTTCAAGCTCTATAGTGTCTGTTTTATGTTTAGTTATCTCTGGTCTTGCTCTTATCATCGTCTTCCTCGGTGTCCTCTACTTGATCTTCAAATTTCTCCGCAAGTCCTCGACTTTATTTCCCATTCCCCATTTCAACTACAACCCAGATCTCTTTTCTTTCTCCTCGCCTCAGCTCCAGCACCTGTTCTTCCTCCATGACTCTGGTCTAGACCAGACTGCCATCGATGCACTTCCAGTGTTCCTCTATGGTAATGTAACCATTAGTCTTGAACAGCCATTCGATTGCGCCGTATGTCTCAATGAGTTCTCTGACACAGACAAGCTCAGACTACTCCCTGTTTGTAGCCATGCTTTCCATCTACACTGTATCGACACATGGCTTCTTTCGAACTCTACTTGCCCTCTCTGCAGAAGATCACTCTCAACCTCAAACGTCTGCTACAACCACTCGGAGACTCTTGTCGCCCCCTTGTCTGGGCATCAGCAGGTGGATGACGGCAAAGCCTCCCTTGCTAAAAGAGTTTTCTCTGTTCGTCTCGGGAGATTCAAAAGCACGAACGAAAGTCAAAGTCAACGACATGATGTCAAAGATGAAATCGGGGTAAGAATGCCAAGAAGATGTTACTCGATGGGCACGCAACAGTATCTCGTATGCGATCAAGATTTTGTGGTGGCTCTGTCTTCGTCTCCTCGTGAGGGAAATATCGGTCGGTAA
CDS Sequence
- >AT3G48030.1
ATGAGTTCGGTAGAACCAGACATGGAAGATCTGTTCCAGGAGAAGAAGCGTGTCAGGAATCCTCTCGTTCCTCTCGGTGCACTTATGACCGCGGGAGTGCTCACGGCTGGGTTGATTAGTTTCAGAAGAGGCAATTCTCAGTTGGGTCAGGTTTTGATGAGAGCTAGGGTGGTCGTCCAGGGTGCTACTGTCGCTTTAATGGTTGGAACCGGTTATTACTACGGTGATAATCCGTGGAAGAAGTTACTTTTGTCTGAAATCCATGAAACTGAAGCTCTTTCACCTAAATCTTCATCTGCAGCAACACTAACTCTTATGAACCAGAAAGATCCATCTTCAAGCTCTATAGTGTCTGTTTTATGTTTAGTTATCTCTGGTCTTGCTCTTATCATCGTCTTCCTCGGTGTCCTCTACTTGATCTTCAAATTTCTCCGCAAGTCCTCGACTTTATTTCCCATTCCCCATTTCAACTACAACCCAGATCTCTTTTCTTTCTCCTCGCCTCAGCTCCAGCACCTGTTCTTCCTCCATGACTCTGGTCTAGACCAGACTGCCATCGATGCACTTCCAGTGTTCCTCTATGGTAATGTAACCATTAGTCTTGAACAGCCATTCGATTGCGCCGTATGTCTCAATGAGTTCTCTGACACAGACAAGCTCAGACTACTCCCTGTTTGTAGCCATGCTTTCCATCTACACTGTATCGACACATGGCTTCTTTCGAACTCTACTTGCCCTCTCTGCAGAAGATCACTCTCAACCTCAAACGTCTGCTACAACCACTCGGAGACTCTTGTCGCCCCCTTGTCTGGGCATCAGCAGGTGGATGACGGCAAAGCCTCCCTTGCTAAAAGAGTTTTCTCTGTTCGTCTCGGGAGATTCAAAAGCACGAACGAAAGTCAAAGTCAACGACATGATGTCAAAGATGAAATCGGGGTAAGAATGCCAAGAAGATGTTACTCGATGGGCACGCAACAGTATCTCGTATGCGATCAAGATTTTGTGGTGGCTCTGTCTTCGTCTCCTCGTGAGGGAAATATCGGTCGGTAA - >AT3G48030.2
ATGAGTTCGGTAGAACCAGACATGGAAGATCTGTTCCAGGAGAAGAAGCGTGTCAGGAATCCTCTCGTTCCTCTCGGTGCACTTATGACCGCGGGAGTGCTCACGGCTGGGTTGATTAGTTTCAGAAGAGGCAATTCTCAGTTGGGTCAGGTTTTGATGAGAGCTAGGGTGGTCGTCCAGGGTGCTACTGTCGCTTTAATGGTTGGAACCGGTTATTACTACGGTGATAATCCGTGGAAGAAGTTACTTTTGTCTGAAATCCATGAAACTGAAGCTCTTTCACCTAAATCTTCATCTGCAGCAACACTAACTCTTATGAACCAGAAAGATCCATCTTCAAGCTCTATAGTGTCTGTTTTATGTTTAGTTATCTCTGGTCTTGCTCTTATCATCGTCTTCCTCGGTGTCCTCTACTTGATCTTCAAATTTCTCCGCAAGTCCTCGACTTTATTTCCCATTCCCCATTTCAACTACAACCCAGATCTCTTTTCTTTCTCCTCGCCTCAGCTCCAGCACCTGTTCTTCCTCCATGACTCTGGTCTAGACCAGACTGCCATCGATGCACTTCCAGTGTTCCTCTATGGTAATGTAACCATTAGTCTTGAACAGCCATTCGATTGCGCCGTATGTCTCAATGAGTTCTCTGACACAGACAAGCTCAGACTACTCCCTGTTTGTAGCCATGCTTTCCATCTACACTGTATCGACACATGGCTTCTTTCGAACTCTACTTGCCCTCTCTGCAGAAGATCACTCTCAACCTCAAACGTCTGCTACAACCACTCGGAGACTCTTGTCGCCCCCTTGTCTGGGCATCAGCAGGTGGATGACGGCAAAGCCTCCCTTGCTAAAAGAGTTTTCTCTGTTCGTCTCGGGAGATTCAAAAGCACGAACGAAAGTCAAAGTCAACGACATGATGTCAAAGATGAAATCGGGGTAAGAATGCCAAGAAGATGTTACTCGATGGGCACGCAACAGTATCTCGTATGCGATCAAGATTTTGTGGTGGCTCTGTCTTCGTCTCCTCGTGAGGGAAATATCGGTCGGTAA
Protein Sequence
- >AT3G48030.1
MSSVEPDMEDLFQEKKRVRNPLVPLGALMTAGVLTAGLISFRRGNSQLGQVLMRARVVVQGATVALMVGTGYYYGDNPWKKLLLSEIHETEALSPKSSSAATLTLMNQKDPSSSSIVSVLCLVISGLALIIVFLGVLYLIFKFLRKSSTLFPIPHFNYNPDLFSFSSPQLQHLFFLHDSGLDQTAIDALPVFLYGNVTISLEQPFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWLLSNSTCPLCRRSLSTSNVCYNHSETLVAPLSGHQQVDDGKASLAKRVFSVRLGRFKSTNESQSQRHDVKDEIGVRMPRRCYSMGTQQYLVCDQDFVVALSSSPREGNIGR - >AT3G48030.2
MSSVEPDMEDLFQEKKRVRNPLVPLGALMTAGVLTAGLISFRRGNSQLGQVLMRARVVVQGATVALMVGTGYYYGDNPWKKLLLSEIHETEALSPKSSSAATLTLMNQKDPSSSSIVSVLCLVISGLALIIVFLGVLYLIFKFLRKSSTLFPIPHFNYNPDLFSFSSPQLQHLFFLHDSGLDQTAIDALPVFLYGNVTISLEQPFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWLLSNSTCPLCRRSLSTSNVCYNHSETLVAPLSGHQQVDDGKASLAKRVFSVRLGRFKSTNESQSQRHDVKDEIGVRMPRRCYSMGTQQYLVCDQDFVVALSSSPREGNIGR