AT3G47860

Gene Details

Gene ID: AT3G47860
Gene Symbol: CHL, LCNP
Gene Name: chloroplastic lipocalin, Lipocalin in the plastid
Description: chloroplastic lipocalin;(source:Araport11)
TAIR Accession: locus:2100407
Genome: Araport11_genome_release
Species: Arabidopsis thaliana

Functional Descriptions

PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)

GO:0009414 — involved in — response to water deprivation
GO:0046322 — involved in — negative regulation of fatty acid oxidation
GO:0036094 — enables — small molecule binding
GO:0010431 — involved in — seed maturation
GO:0009535 — located in — chloroplast thylakoid membrane
GO:0009408 — involved in — response to heat
GO:0009644 — involved in — response to high light intensity
GO:0010117 — acts upstream of or within — photoprotection
GO:1901562 — involved in — response to paraquat
GO:0031977 — located in — thylakoid lumen
GO:0009737 — involved in — response to abscisic acid
GO:0006979 — acts upstream of or within — response to oxidative stress
GO:0009507 — located in — chloroplast
GO:0005576 — located in — extracellular region
GO:0005829 — located in — cytosol

CS69922 — Low nonphotochemical quenching (NPQ).
CS69923 — Low nonphotochemical quenching (NPQ).
CS69924 — Reversal of nonphotochemical quenching (NPQ) to wild-type levels when compared with soq1-1 single mutant. Low NPQ during cold and heat stress.
CS72378 — decrease in NPQ levels after cold and high light treatment (6 C and 1600 uE)
SALK_133049 — Mutant plants show increased lipid peroxidation and more damage upon photooxidative stress induced by drought, high light or paraquat.

Functional Keywords

Literature and News

Gene Resources

Sequences

cDNA Sequence

>AT3G47860.1
GAAATATCTCCCAACCTGTCAACACTTAAAAAAAGACATAAAAGTCTGTGGCGACCAAAAGAAGTGAGAGAGAAAGAGAGAGATATGATATTATTAAGTAGTAGTATAAGCCTCTCAAGACCAGTTTCTTCTCAAAGCTTCTCTCCACCTGCTGCCACTTCAACAAGGAGATCTCATTCCTCTGTCACAGTCAAGTGCTGCTGTTCTTCCAGAAGGTTGTTGAAGAATCCTGAGTTAAAATGTTCCTTGGAGAATCTCTTTGAAATCCAGGCTTTGAGGAAGTGTTTTGTTTCAGGGTTTGCAGCTATTTTGCTTCTCTCTCAGGCAGGCCAGGGTATAGCGTTGGATCTCTCATCTGGTTATCAGAACATTTGCCAACTAGGGAGTGCTGCTGCTGTGGGAGAAAACAAGCTGACTCTTCCATCTGATGGTGACTCGGAATCAATGATGATGATGATGATGAGAGGCATGACTGCTAAGAACTTTGACCCTGTTAGGTACTCTGGAAGATGGTTTGAAGTAGCTTCTCTTAAGCGTGGATTTGCAGGTCAAGGCCAAGAAGACTGTCATTGCACTCAGGGAGTATACACGTTTGATATGAAGGAATCAGCCATTAGAGTAGATACATTTTGTGTTCATGGCAGCCCTGATGGATATATAACAGGAATCAGAGGGAAAGTTCAATGCGTGGGAGCGGAAGACCTCGAGAAAAGCGAGACTGACTTAGAAAAGCAAGAGATGATTAAAGAGAAGTGTTTCCTACGATTTCCCACCATTCCTTTTATCCCCAAGTTGCCTTATGATGTCATAGCCACAGACTACGACAACTACGCACTTGTTTCTGGAGCCAAAGACAAGGGCTTTGTTCAGGTATACTCAAGGACGCCAAATCCAGGACCTGAGTTCATCGCAAAGTACAAGAACTACTTGGCACAATTTGGCTATGACCCGGAAAAAATAAAGGATACACCACAGGACTGTGAAGTGACTGATGCTGAGCTAGCAGCCATGATGTCCATGCCAGGTATGGAGCAAACACTGACCAACCAGTTTCCAGATCTTGGATTAAGAAAGTCAGTCCAGTTTGATCCCTTCACAAGTGTGTTTGAAACCTTGAAGAAACTTGTACCGCTCTATTTCAAATAGAGCAAGCTTCTTTGCTCAAATTCTTATGTAGACTATAATCACTGTCCATATATACATATCTTCCAGAATCAAAACACTCTTCTGATCATAACACCATTGATTAGAGAAGTTGCATACACTCCACAGAGAAACCAAAAGTACTAATCTTGATGCGCCAAAAGACAAAAACCATCAAC

CDS Sequence

>AT3G47860.1
ATGATATTATTAAGTAGTAGTATAAGCCTCTCAAGACCAGTTTCTTCTCAAAGCTTCTCTCCACCTGCTGCCACTTCAACAAGGAGATCTCATTCCTCTGTCACAGTCAAGTGCTGCTGTTCTTCCAGAAGGTTGTTGAAGAATCCTGAGTTAAAATGTTCCTTGGAGAATCTCTTTGAAATCCAGGCTTTGAGGAAGTGTTTTGTTTCAGGGTTTGCAGCTATTTTGCTTCTCTCTCAGGCAGGCCAGGGTATAGCGTTGGATCTCTCATCTGGTTATCAGAACATTTGCCAACTAGGGAGTGCTGCTGCTGTGGGAGAAAACAAGCTGACTCTTCCATCTGATGGTGACTCGGAATCAATGATGATGATGATGATGAGAGGCATGACTGCTAAGAACTTTGACCCTGTTAGGTACTCTGGAAGATGGTTTGAAGTAGCTTCTCTTAAGCGTGGATTTGCAGGTCAAGGCCAAGAAGACTGTCATTGCACTCAGGGAGTATACACGTTTGATATGAAGGAATCAGCCATTAGAGTAGATACATTTTGTGTTCATGGCAGCCCTGATGGATATATAACAGGAATCAGAGGGAAAGTTCAATGCGTGGGAGCGGAAGACCTCGAGAAAAGCGAGACTGACTTAGAAAAGCAAGAGATGATTAAAGAGAAGTGTTTCCTACGATTTCCCACCATTCCTTTTATCCCCAAGTTGCCTTATGATGTCATAGCCACAGACTACGACAACTACGCACTTGTTTCTGGAGCCAAAGACAAGGGCTTTGTTCAGGTATACTCAAGGACGCCAAATCCAGGACCTGAGTTCATCGCAAAGTACAAGAACTACTTGGCACAATTTGGCTATGACCCGGAAAAAATAAAGGATACACCACAGGACTGTGAAGTGACTGATGCTGAGCTAGCAGCCATGATGTCCATGCCAGGTATGGAGCAAACACTGACCAACCAGTTTCCAGATCTTGGATTAAGAAAGTCAGTCCAGTTTGATCCCTTCACAAGTGTGTTTGAAACCTTGAAGAAACTTGTACCGCTCTATTTCAAATAG

Protein Sequence

>AT3G47860.1
MILLSSSISLSRPVSSQSFSPPAATSTRRSHSSVTVKCCCSSRRLLKNPELKCSLENLFEIQALRKCFVSGFAAILLLSQAGQGIALDLSSGYQNICQLGSAAAVGENKLTLPSDGDSESMMMMMMRGMTAKNFDPVRYSGRWFEVASLKRGFAGQGQEDCHCTQGVYTFDMKESAIRVDTFCVHGSPDGYITGIRGKVQCVGAEDLEKSETDLEKQEMIKEKCFLRFPTIPFIPKLPYDVIATDYDNYALVSGAKDKGFVQVYSRTPNPGPEFIAKYKNYLAQFGYDPEKIKDTPQDCEVTDAELAAMMSMPGMEQTLTNQFPDLGLRKSVQFDPFTSVFETLKKLVPLYFK