Information report for AT3G47820
Gene Details
|
|
Functional Descriptions
- GO:0032870 — acts upstream of or within — cellular response to hormone stimulus
- GO:0005634 — is active in — nucleus
- GO:0016070 — acts upstream of or within — RNA metabolic process
- GO:1901701 — acts upstream of or within — cellular response to oxygen-containing compound
- GO:0071417 — acts upstream of or within — cellular response to organonitrogen compound
- GO:0010017 — acts upstream of or within — red or far-red light signaling pathway
- GO:0050832 — acts upstream of or within — defense response to fungus
- GO:0009639 — acts upstream of or within — response to red or far red light
- GO:0043412 — acts upstream of or within — macromolecule modification
- GO:0003674 — enables — molecular_function
- GO:0071407 — acts upstream of or within — cellular response to organic cyclic compound
- GO:0042742 — acts upstream of or within — defense response to bacterium
- GO:0043436 — acts upstream of or within — oxoacid metabolic process
- GO:0031347 — acts upstream of or within — regulation of defense response
- GO:0071396 — acts upstream of or within — cellular response to lipid
- GO:0065008 — acts upstream of or within — regulation of biological quality
- GO:0005634 — located in — nucleus
- GO:0005737 — is active in — cytoplasm
Functional Keywords
Literature and News
- Armadillo repeat proteins: beyond the animal kingdom. DOI: 10.1016/s0962-8924(03)00167-3 ; PMID: 12946625
- Structure and biochemical function of a prototypical Arabidopsis U-box domain. DOI: 10.1074/jbc.M405057200 ; PMID: 15231834
- Endogenous Arabidopsis messenger RNAs transported to distant tissues. DOI: 10.1038/nplants.2015.25 ; PMID: 27247031
- Plant U-Box40 Mediates Degradation of the Brassinosteroid-Responsive Transcription Factor BZR1 in Arabidopsis Roots. DOI: 10.1105/tpc.18.00941 ; PMID: 30814258
- News from the PUB: plant U-box type E3 ubiquitin ligases. DOI: 10.1093/jxb/erx411 ; PMID: 29237060
Gene Resources
- UniProt: A0A178V8W3
- EMBL: CACSHJ010000089, LUHQ01000003
- AlphaFoldDB: A0A178V8W3
- EnsemblPlants: AT3G47820.1
- Gramene: AT3G47820.1
- KEGG: ath:AT3G47820
- Orthologous matrix: IGNMRFR
- ExpressionAtlas: AT3G47820
- InterPro: IPR000225, IPR003613, IPR011989
- PANTHER: PTHR23315, PTHR23315:SF283
- SUPFAM: SSF48371, SSF57850
- PROSITE: PS50176, PS51698
- Gene3D: 1.25.10.10, 3.30.40.10
- OrthoDB: A0A178V8W3
- SWISS-MODEL: A0A178V8W3
Homologs
- Glycine max Glyma.11G140100, Glyma.12G063700, GmPUB13
- Gossypium hirsutum Gohir.A07G097101, Gohir.D07G101600
- Lactuca sativa gene-LSAT_8X76040
- Manihot esculenta MANES_11G131500
- Saccharum spontaneum Sspon.02G0038600-1B
- Setaria italica SETIT_034883mg
- Setaria viridis SEVIR_9G456100v2
Sequences
cDNA Sequence
- >AT3G47820.1
GTATCAGTTATCAAACCAGAGAGAATCTTTTAGACTCGATCAAACAAAGACCTTCCATTACAAAACCTCAAAAGTTGAAGTCAATAAAAATCTCTTACAACCACAACAACTTCTCAGATTCTTCTTCGCTTTGTTGTTCGTTCTCTTCTTCAAGCTCTCTGTCTCTCCAAATGGGCGACACCGGTAGACACAAATGGTTCTCCTTCCACCACCACCGTTCAGCCTCCGCCACAACTATGCCACAACACAACAGCCCCGGCGAAACTCCAACAGAGTTCCTCTGTCCCATCACCGGCTTTTTGATGTCAGACCCCGTCGTCGTCGCTTCTGGTCAAACATTTGAACGTATCTCCGTCCAAGTTTGCCGGAATCTCAGTTTTGCTCCAAAGCTTCACGACGGAACTCAACCAGATTTATCCACCGTAATCCCAAATCTCGCCATGAAATCAACAATTTTAAGCTGGTGCGATCGGAACAAAATGGAACATCCTCGTCCTCCTGATTACGCTTACGTCGAAGGTGTTGTTCGTACCCGAATGGATTCACTTCCTCCGGGTTCGGGTCATCGGATCGCTAAATCCGAAATCTTACCACCGGTGGCTGAGAATTCAAATTCAAATTCAGATTACGATTCCGTGATGGGAGCGATTCGATCTCGTTCAAGGACTTCATTATCGTCAACTACTTCTCTTCCACTTCACCAAACCCGACCCATTAATCACTCGACCCGGATCCAAAGCTCATTCTCTACATCGGATTATTCATCTTTTCCTCCGATGTCACCGGAAGAAGAAGAGATCTACAACAAATTGACAAGTGTTGACACAATCGATCACGAGCAAGGTCTGATTCAGCTAAGGAAGACGACGAGATCAAACGAGACCACGAGAATCTCTCTTTGTACTGATCGGATTCTCTCATTACTCCGATCTCTGATCGTTTCACGGTACAACATCGTGCAAACAAACGCCGCCGCGTCGATTGTTAATCTCTCGTTAGAGAAACCTAACAAATTGAAAATCGTACGGTCAGGATTCGTTCCTTTGTTGATTGATGTTTTGAAATCGGGATCAACGGAGGCGCAAGAGCATGTAATCGGAGCTTTGTTTAGTTTAGCGGTTGAAGAAGAGAACAAGATGGTGATCGGAGTTCTTGGTGCGGTGGAGCCGCTTCTTCACGCGCTTCGTTCATCGGAGAGTGAGAGAGCTCGTCAAGACGCGGCGCTTGCGCTTTATCATTTGTCGTTGATTCCGAATAACCGAAGTAGGCTGGTTAAAGCCGGTGCAGTGCCGATGATGCTGTCTATGATCAGATCCGGTGAATCGGCGAGCAGGATTCTTTTATTACTGTGTAATCTGGCGGCTTGTTCGGAAGGAAAAGGTGCGATGCTTGACGGGAATGCGGTGTCGATACTGGTTGGGAAATTGCGAGAAAGTGGAGGAGCTGAGTCAGACGCGGCGGCGCGTGAGAATTGCGTCGGGGCTTTGTTGACGTTGAGTGTAGGGAATATGAGGTTTAGAGGATTGGCGAGTGAGGCGGGTGCGGAGGAGATTTTGACGGAAATTGTGGAGAGCGAGAGCGGAAGCGGGCGGTTGAAGGAGAAAGCTTCAAAGATTCTACAGACATTGAGAGGCGGAGGGAGTGAATTCGGTGAAGGAGCGGAGGCGCGTGAGTGGAACCGTATGTTGGAAGCGAGTGGGCTAAGTCGTTCTCAGTTTCAACAAGGAGGGCAAAAAGGGGGTTTTGCTTATTCCTCTCAGTTTTAGCTCTATTCAATTTTTTTATTTTCATTTTCTTATCTCTTTTCTTGTTGGTAAATTTTTTTCTCAAATATTTGTTTTTTTTTCACTCTTTTTTGTGACTAATATTTTGGGAGTGAATTTGTAATATCTGATTTTAATCTTCTTTAATTTGTCATTTCTAATGAAACGACAAACAGTAAAATGTTGATTATTTCGTTTGTAAAGAGTTGCTCTTGTTTAATTTGTGAAAACGTTAGACAAACAAAAGTCGTCTCGTGGAGAGTTACTCTGTTTGGTGTACCGTCTTCAGATCTTTTGATTAAAGTACG
CDS Sequence
- >AT3G47820.1
ATGGGCGACACCGGTAGACACAAATGGTTCTCCTTCCACCACCACCGTTCAGCCTCCGCCACAACTATGCCACAACACAACAGCCCCGGCGAAACTCCAACAGAGTTCCTCTGTCCCATCACCGGCTTTTTGATGTCAGACCCCGTCGTCGTCGCTTCTGGTCAAACATTTGAACGTATCTCCGTCCAAGTTTGCCGGAATCTCAGTTTTGCTCCAAAGCTTCACGACGGAACTCAACCAGATTTATCCACCGTAATCCCAAATCTCGCCATGAAATCAACAATTTTAAGCTGGTGCGATCGGAACAAAATGGAACATCCTCGTCCTCCTGATTACGCTTACGTCGAAGGTGTTGTTCGTACCCGAATGGATTCACTTCCTCCGGGTTCGGGTCATCGGATCGCTAAATCCGAAATCTTACCACCGGTGGCTGAGAATTCAAATTCAAATTCAGATTACGATTCCGTGATGGGAGCGATTCGATCTCGTTCAAGGACTTCATTATCGTCAACTACTTCTCTTCCACTTCACCAAACCCGACCCATTAATCACTCGACCCGGATCCAAAGCTCATTCTCTACATCGGATTATTCATCTTTTCCTCCGATGTCACCGGAAGAAGAAGAGATCTACAACAAATTGACAAGTGTTGACACAATCGATCACGAGCAAGGTCTGATTCAGCTAAGGAAGACGACGAGATCAAACGAGACCACGAGAATCTCTCTTTGTACTGATCGGATTCTCTCATTACTCCGATCTCTGATCGTTTCACGGTACAACATCGTGCAAACAAACGCCGCCGCGTCGATTGTTAATCTCTCGTTAGAGAAACCTAACAAATTGAAAATCGTACGGTCAGGATTCGTTCCTTTGTTGATTGATGTTTTGAAATCGGGATCAACGGAGGCGCAAGAGCATGTAATCGGAGCTTTGTTTAGTTTAGCGGTTGAAGAAGAGAACAAGATGGTGATCGGAGTTCTTGGTGCGGTGGAGCCGCTTCTTCACGCGCTTCGTTCATCGGAGAGTGAGAGAGCTCGTCAAGACGCGGCGCTTGCGCTTTATCATTTGTCGTTGATTCCGAATAACCGAAGTAGGCTGGTTAAAGCCGGTGCAGTGCCGATGATGCTGTCTATGATCAGATCCGGTGAATCGGCGAGCAGGATTCTTTTATTACTGTGTAATCTGGCGGCTTGTTCGGAAGGAAAAGGTGCGATGCTTGACGGGAATGCGGTGTCGATACTGGTTGGGAAATTGCGAGAAAGTGGAGGAGCTGAGTCAGACGCGGCGGCGCGTGAGAATTGCGTCGGGGCTTTGTTGACGTTGAGTGTAGGGAATATGAGGTTTAGAGGATTGGCGAGTGAGGCGGGTGCGGAGGAGATTTTGACGGAAATTGTGGAGAGCGAGAGCGGAAGCGGGCGGTTGAAGGAGAAAGCTTCAAAGATTCTACAGACATTGAGAGGCGGAGGGAGTGAATTCGGTGAAGGAGCGGAGGCGCGTGAGTGGAACCGTATGTTGGAAGCGAGTGGGCTAAGTCGTTCTCAGTTTCAACAAGGAGGGCAAAAAGGGGGTTTTGCTTATTCCTCTCAGTTTTAG
Protein Sequence
- >AT3G47820.1
MGDTGRHKWFSFHHHRSASATTMPQHNSPGETPTEFLCPITGFLMSDPVVVASGQTFERISVQVCRNLSFAPKLHDGTQPDLSTVIPNLAMKSTILSWCDRNKMEHPRPPDYAYVEGVVRTRMDSLPPGSGHRIAKSEILPPVAENSNSNSDYDSVMGAIRSRSRTSLSSTTSLPLHQTRPINHSTRIQSSFSTSDYSSFPPMSPEEEEIYNKLTSVDTIDHEQGLIQLRKTTRSNETTRISLCTDRILSLLRSLIVSRYNIVQTNAAASIVNLSLEKPNKLKIVRSGFVPLLIDVLKSGSTEAQEHVIGALFSLAVEEENKMVIGVLGAVEPLLHALRSSESERARQDAALALYHLSLIPNNRSRLVKAGAVPMMLSMIRSGESASRILLLLCNLAACSEGKGAMLDGNAVSILVGKLRESGGAESDAAARENCVGALLTLSVGNMRFRGLASEAGAEEILTEIVESESGSGRLKEKASKILQTLRGGGSEFGEGAEAREWNRMLEASGLSRSQFQQGGQKGGFAYSSQF