Gene Details:

• Gene ID: AT3G47810
• Gene Symbol: ATVPS29, MAG1, VPS29
• Gene Name: MAIGO 1, VACUOLAR PROTEIN SORTING 29
• Description: Calcineurin-like metallo-phosphoesterase superfamily protein;(source:Araport11)
• TAIR Accession: locus:2100362
• Genome: Araport11_genome_release
• Species: Arabidopsis thaliana

Transcripts:

• AT3G47810.1     AT3G47810.3     AT3G47810.2

Plant Ontology Annotations:

• PO:0000037  — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
• PO:0008019  — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
• PO:0009005  — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
• PO:0009006  — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
• PO:0009009  — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
• PO:0009025  — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
• PO:0009029  — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
• PO:0009031  — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
• PO:0009046  — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
• PO:0009052  — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
• PO:0020030  — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
• PO:0020038  — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
• PO:0020100  — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
• PO:0020137  — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
• PO:0025022  — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
• PO:0025281  — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
• PO:0025195  — pollen tube cell — célula del tubo polínico (Spanish, exact), 花粉管細胞 (Japanese, exact)
• PO:0000293  — guard cell — célula guardiana (Spanish, exact), occlusive cell (exact), 孔辺細胞 (Japanese, exact)

Gene Ontology:

• GO:0030904  — part of — retromer complex
• GO:0042147  — involved in — retrograde transport, endosome to Golgi
• GO:0005768  — is active in — endosome
• GO:0001881  — acts upstream of or within — receptor recycling
• GO:0005829  — located in — cytosol
• GO:0006886  — involved in — intracellular protein transport
• GO:0006623  — acts upstream of or within — protein targeting to vacuole
• GO:0016020  — located in — membrane
• GO:0008333  — acts upstream of or within — endosome to lysosome transport
• GO:0007034  — acts upstream of or within — vacuolar transport
• GO:2000012  — involved in — regulation of auxin polar transport
• GO:0043231  — located in — intracellular membrane-bounded organelle
• GO:0005771  — located in — multivesicular body

Germplasm Phenotype:

• mag1-1 zig-1  — Reduced but still significant response to gravity. mag1 represses the phenotype of zig-1.Similar phenotype to mag-1 single mutant.

Function-related keywords:

• shoot axis apex ,  leaf lamina base ,  root ,  shoot system ,  plant embryo ,  vascular leaf ,  stamen ,  sepal ,  flower ,  inflorescence flower pedicel ,  cotyledon ,  petiole ,  hypocotyl ,  leaf apex ,  collective leaf structure ,  pollen ,  pollen tube cell ,  pollen ,  guard cell

Literature:

• Resources for targeted insertional and deletional mutagenesis in Arabidopsis.   DOI:  10.1023/B:PLAN.0000009271.08420.d9 ;  PMID:  14756312
• AtVPS29, a putative component of a retromer complex, is required for the efficient sorting of seed storage proteins.   DOI:  10.1093/pcp/pcj103 ;  PMID:  16926167
• The retromer protein VPS29 links cell polarity and organ initiation in plants.   DOI:  10.1016/j.cell.2007.08.040 ;  PMID:  17889650
• Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.   DOI:  10.1104/pp.108.121038 ;  PMID:  18650403
• Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis.   DOI:  10.1104/pp.108.126375 ;  PMID:  18775970
• Differential degradation of PIN2 auxin efflux carrier by retromer-dependent vacuolar targeting.   DOI:  10.1073/pnas.0808073105 ;  PMID:  19004783
• Loss-of-function mutations of retromer large subunit genes suppress the phenotype of an Arabidopsis zig mutant that lacks Qb-SNARE VTI11.   DOI:  10.1105/tpc.109.069294 ;  PMID:  20086190
• Mechanisms governing the endosomal membrane recruitment of the core retromer in Arabidopsis.   DOI:  10.1074/jbc.M112.440503 ;  PMID:  23362252
• Retromer association with membranes: plants have their own rules!   DOI:  10.4161/psb.25312 ;  PMID:  23803747
• Retromer subunits VPS35A and VPS29 mediate prevacuolar compartment (PVC) function in Arabidopsis.   DOI:  10.1093/mp/sst044 ;  PMID:  23770835
• Myrosin cell development is regulated by endocytosis machinery and PIN1 polarity in leaf primordia of Arabidopsis thaliana.   DOI:  10.1105/tpc.114.131441 ;  PMID:  25428982
• Vacuolar Protein Sorting 26C encodes an evolutionarily conserved large retromer subunit in eukaryotes that is important for root hair growth in Arabidopsis thaliana.   DOI:  10.1111/tpj.13880 ;  PMID:  29495075
• The Arabidopsis USL1 controls multiple aspects of development by affecting late endosome morphology.   DOI:  10.1111/nph.15249 ;  PMID:  29897620
• Combined Proteomic and Metabolomic Profiling of the Arabidopsis thaliana vps29 Mutant Reveals Pleiotropic Functions of the Retromer in Seed Development.   DOI:  10.3390/ijms20020362 ;  PMID:  30654520
• Plant retromer, localized to the prevacuolar compartment and microvesicles in Arabidopsis, may interact with vacuolar sorting receptors.   DOI:  10.1105/tpc.105.035907 ;  PMID:  16582012
• AtVPS29, a putative component of a retromer complex, is required for the efficient sorting of seed storage proteins.   DOI:  10.1093/pcp/pcj103 ;  PMID:  16926167
• Arabidopsis vacuolar sorting mutants (green fluorescent seed) can be identified efficiently by secretion of vacuole-targeted green fluorescent protein in their seeds.   DOI:  10.1105/tpc.106.045997 ;  PMID:  17293568
• Plant retromer, localized to the prevacuolar compartment and microvesicles in Arabidopsis, may interact with vacuolar sorting receptors.   DOI:  10.1105/tpc.105.035907 ;  PMID:  16582012
• The retromer protein VPS29 links cell polarity and organ initiation in plants.   DOI:  10.1016/j.cell.2007.08.040 ;  PMID:  17889650
• Plant retromer, localized to the prevacuolar compartment and microvesicles in Arabidopsis, may interact with vacuolar sorting receptors.   DOI:  10.1105/tpc.105.035907 ;  PMID:  16582012
• The retromer protein VPS29 links cell polarity and organ initiation in plants.   DOI:  10.1016/j.cell.2007.08.040 ;  PMID:  17889650
• Analysis of protein complexes in Arabidopsis leaves using size exclusion chromatography and label-free protein correlation profiling.   DOI:  10.1016/j.jprot.2017.06.004 ;  PMID:  28627464

Sequences: