Gene Details:

• Gene ID: AT3G47640
• Gene Symbol: PYE
• Gene Name: POPEYE
• Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein;(source:Araport11)
• TAIR Accession: locus:2079102
• Genome: Araport11_genome_release
• Species: Arabidopsis thaliana

Transcripts:

• AT3G47640.1     AT3G47640.2     AT3G47640.3

Plant Ontology Annotations:

• PO:0000037  — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
• PO:0008019  — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
• PO:0009005  — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
• PO:0009006  — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
• PO:0009009  — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
• PO:0009025  — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
• PO:0009029  — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
• PO:0009031  — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
• PO:0009046  — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
• PO:0009052  — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
• PO:0020030  — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
• PO:0020038  — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
• PO:0020100  — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
• PO:0020137  — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
• PO:0025022  — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
• PO:0025281  — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)

Gene Ontology:

• GO:0005634  — located in — nucleus
• GO:0003700  — enables — DNA-binding transcription factor activity
• GO:0005515  — enables — protein binding
• GO:0006355  — acts upstream of or within — regulation of DNA-templated transcription
• GO:0010106  — acts upstream of or within — cellular response to iron ion starvation
• GO:0046983  — enables — protein dimerization activity
• GO:0060586  — acts upstream of or within — multicellular organismal-level iron ion homeostasis

Function-related keywords:

• shoot axis apex ,  leaf lamina base ,  root ,  shoot system ,  plant embryo ,  vascular leaf ,  stamen ,  sepal ,  flower ,  inflorescence flower pedicel ,  cotyledon ,  petiole ,  hypocotyl ,  leaf apex ,  collective leaf structure ,  pollen

Literature:

• Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.   DOI:  10.1126/science.290.5499.2105 ;  PMID:  11118137
• The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity.   DOI:  10.1093/molbev/msg088 ;  PMID:  12679534
• The Arabidopsis basic/helix-loop-helix transcription factor family.   DOI:  10.1105/tpc.013839 ;  PMID:  12897250
• Update on the basic helix-loop-helix transcription factor gene family in Arabidopsis thaliana.   DOI:  10.1105/tpc.151140 ;  PMID:  14600211
• Overexpression of a mutant basic helix-loop-helix protein HFR1, HFR1-deltaN105, activates a branch pathway of light signaling in Arabidopsis.   DOI:  10.1104/pp.103.029751 ;  PMID:  14645731
• Binding of arabinogalactan proteins by Yariv phenylglycoside triggers wound-like responses in Arabidopsis cell cultures.   DOI:  10.1104/pp.104.039370 ;  PMID:  15235117
• The bHLH transcription factor POPEYE regulates response to iron deficiency in Arabidopsis roots.   DOI:  10.1105/tpc.110.074096 ;  PMID:  20675571
• Microarray analysis of Arabidopsis plants in response to allelochemical L-DOPA.   DOI:  10.1007/s00425-010-1294-7 ;  PMID:  20978802
• Fitting into the harsh reality: regulation of iron-deficiency responses in dicotyledonous plants.   DOI:  10.1093/mp/ssr065 ;  PMID:  21873619
• The transcriptional response of Arabidopsis leaves to Fe deficiency.   DOI:  10.3389/fpls.2013.00276 ;  PMID:  23888164
• Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.   DOI:  10.1186/1471-2229-13-229 ;  PMID:  24377444
• Chromate alters root system architecture and activates expression of genes involved in iron homeostasis and signaling in Arabidopsis thaliana.   DOI:  10.1007/s11103-014-0210-0 ;  PMID:  24928490
• bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana.   DOI:  10.1093/jxb/erx043 ;  PMID:  28369511
• Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.   DOI:  10.3389/fpls.2017.02100 ;  PMID:  29321786
• The basic helix-loop-helix transcription factor, bHLH11 functions in the iron-uptake system in Arabidopsis thaliana.   DOI:  10.1007/s10265-018-1068-z ;  PMID:  30417276
• MicroRNAs transcriptionally regulate promoter activity in Arabidopsis thaliana.   DOI:  10.1111/jipb.12775 ;  PMID:  30623571
• Iron and Phosphate Deficiency Regulators Concertedly Control Coumarin Profiles in Arabidopsis thaliana Roots During Iron, Phosphate, and Combined Deficiencies.   DOI:  10.3389/fpls.2019.00113 ;  PMID:  30804973
• The iron deficiency response in Arabidopsis thaliana requires the phosphorylated transcription factor URI.   DOI:  10.1073/pnas.1916892116 ;  PMID:  31776249
• The Transcription Factor bHLH121 Interacts with bHLH105 (ILR3) and Its Closest Homologs to Regulate Iron Homeostasis in Arabidopsis.   DOI:  10.1105/tpc.19.00541 ;  PMID:  31776233
• Alteration of iron responsive gene expression in Arabidopsis glutaredoxin S17 loss of function plants with or without iron stress.   DOI:  10.1080/15592324.2020.1758455 ;  PMID:  32351167
• Further insights into the role of bHLH121 in the regulation of iron homeostasis in Arabidopsis thaliana.   DOI:  10.1080/15592324.2020.1795582 ;  PMID:  32692954
• Sulphur availability modulates Arabidopsis thaliana responses to iron deficiency.   DOI:  10.1371/journal.pone.0237998 ;  PMID:  32817691
• Two NPF transporters mediate iron long-distance transport and homeostasis in Arabidopsis.   DOI:  10.1016/j.xplc.2021.100244 ;  PMID:  34778750
• Altered metal distribution in the sr45-1 Arabidopsis mutant causes developmental defects.   DOI:  10.1111/tpj.15740 ;  PMID:  35305053
• MNB1 gene is involved in regulating the iron-deficiency stress response in Arabidopsis thaliana.   DOI:  10.1186/s12870-022-03553-5 ;  PMID:  35346040
• ELONGATED HYPOCOTYL 5 regulates BRUTUS and affects iron acquisition and homeostasis in Arabidopsis thaliana.   DOI:  10.1111/tpj.16191 ;  PMID:  36920240
• Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.   DOI:  10.1126/science.290.5499.2105 ;  PMID:  11118137
• The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity.   DOI:  10.1093/molbev/msg088 ;  PMID:  12679534

Sequences: