Information report for AT3G47620
Gene Details
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Functional Descriptions
- PO:0000037 — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
- PO:0008019 — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
- PO:0009005 — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
- PO:0009006 — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
- PO:0009009 — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
- PO:0009025 — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
- PO:0009029 — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
- PO:0009031 — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
- PO:0009046 — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
- PO:0009052 — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
- PO:0020030 — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
- PO:0020038 — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
- PO:0020100 — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
- PO:0020137 — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
- PO:0025022 — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
- PO:0025281 — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
- GO:0005515 — enables — protein binding
- GO:0031347 — acts upstream of or within — regulation of defense response
- GO:0006355 — acts upstream of or within — regulation of DNA-templated transcription
- GO:0009739 — acts upstream of or within — response to gibberellin
- GO:0043565 — enables — sequence-specific DNA binding
- GO:0009735 — acts upstream of or within — response to cytokinin
- GO:0000976 — enables — transcription cis-regulatory region binding
- GO:0010229 — acts upstream of or within — inflorescence development
- GO:0003700 — enables — DNA-binding transcription factor activity
- GO:0005634 — located in — nucleus
- GO:0010029 — acts upstream of or within — regulation of seed germination
- GO:0009737 — acts upstream of or within — response to abscisic acid
- GO:0005634 — is active in — nucleus
- SM_3_19812 — Delayed germination. Germination of the mutants exhibited hypersensitivity to exogenously applied abscisic acid and paclobutrazol, an inhibitor of gibberellin biosynthesis.
- SM_3_35210 — Delayed germination. Germination of the mutants exhibited hypersensitivity to exogenously applied abscisic acid and paclobutrazol, an inhibitor of gibberellin biosynthesis.
- WiscDsLox445B10 — Delayed germination. Germination of the mutants exhibited hypersensitivity to exogenously applied abscisic acid and paclobutrazol, an inhibitor of gibberellin biosynthesis.
Functional Keywords
Literature and News
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
- The cold-induced early activation of phospholipase C and D pathways determines the response of two distinct clusters of genes in Arabidopsis cell suspensions. DOI: 10.1104/pp.105.068171 ; PMID: 16258011
- Transcriptome analysis of Arabidopsis clubroots indicate a key role for cytokinins in disease development. DOI: 10.1094/MPMI-19-0480 ; PMID: 16673935
- Qualitative network models and genome-wide expression data define carbon/nitrogen-responsive molecular machines in Arabidopsis. DOI: 10.1186/gb-2007-8-1-r7 ; PMID: 17217541
- Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection. DOI: 10.1104/pp.108.121038 ; PMID: 18650403
- Functional compensation of primary and secondary metabolites by duplicate genes in Arabidopsis thaliana. DOI: 10.1093/molbev/msq204 ; PMID: 20736450
- TCP14 and TCP15 affect internode length and leaf shape in Arabidopsis. DOI: 10.1111/j.1365-313X.2011.04674.x ; PMID: 21668538
- Independently evolved virulence effectors converge onto hubs in a plant immune system network. DOI: 10.1126/science.1203659 ; PMID: 21798943
- The Arabidopsis O-linked N-acetylglucosamine transferase SPINDLY interacts with class I TCPs to facilitate cytokinin responses in leaves and flowers. DOI: 10.1105/tpc.111.093518 ; PMID: 22267487
- Class I TCPs modulate cytokinin-induced branching and meristematic activity in tomato. DOI: 10.4161/psb.20606 ; PMID: 22751297
- The Arabidopsis immune adaptor SRFR1 interacts with TCP transcription factors that redundantly contribute to effector-triggered immunity. DOI: 10.1111/tpj.12527 ; PMID: 24689742
- Class I TCP-DELLA interactions in inflorescence shoot apex determine plant height. DOI: 10.1016/j.cub.2014.07.012 ; PMID: 25127215
- An Arabidopsis gene regulatory network for secondary cell wall synthesis. DOI: 10.1038/nature14099 ; PMID: 25533953
- TCP14 and TCP15 mediate the promotion of seed germination by gibberellins in Arabidopsis thaliana. DOI: 10.1016/j.molp.2014.11.018 ; PMID: 25655823
- The ubiquitin receptors DA1, DAR1, and DAR2 redundantly regulate endoreduplication by modulating the stability of TCP14/15 in Arabidopsis. DOI: 10.1105/tpc.114.132274 ; PMID: 25757472
- TCP15 modulates cytokinin and auxin responses during gynoecium development in Arabidopsis. DOI: 10.1111/tpj.12992 ; PMID: 26303297
- Redox-Dependent Modulation of Anthocyanin Biosynthesis by the TCP Transcription Factor TCP15 during Exposure to High Light Intensity Conditions in Arabidopsis. DOI: 10.1104/pp.15.01016 ; PMID: 26574599
- The Putative O-Linked N-Acetylglucosamine Transferase SPINDLY Inhibits Class I TCP Proteolysis to Promote Sensitivity to Cytokinin. DOI: 10.1104/pp.16.00343 ; PMID: 27208284
- Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci. DOI: 10.3389/fpls.2017.02043 ; PMID: 29250092
- Alterations of plant architecture and phase transition by the phytoplasma virulence factor SAP11. DOI: 10.1093/jxb/ery318 ; PMID: 30165491
- TCP Transcription Factors Interact With NPR1 and Contribute Redundantly to Systemic Acquired Resistance. DOI: 10.3389/fpls.2018.01153 ; PMID: 30154809
- TCP7 functions redundantly with several Class I TCPs and regulates endoreplication in Arabidopsis. DOI: 10.1111/jipb.12749 ; PMID: 30474211
- Direct Regulation of the EFR-Dependent Immune Response by Arabidopsis TCP Transcription Factors. DOI: 10.1094/MPMI-07-18-0201-FI ; PMID: 30480481
- Class I TCP Transcription Factors Target the Gibberellin Biosynthesis Gene GA20ox1 and the Growth-Promoting Genes HBI1 and PRE6 during Thermomorphogenic Growth in Arabidopsis. DOI: 10.1093/pcp/pcz137 ; PMID: 31292642
- The MPK8-TCP14 pathway promotes seed germination in Arabidopsis. DOI: 10.1111/tpj.14461 ; PMID: 31325184
- Transcriptional regulation of nitrogen-associated metabolism and growth. DOI: 10.1038/s41586-018-0656-3 ; PMID: 30356219
- A PXY-Mediated Transcriptional Network Integrates Signaling Mechanisms to Control Vascular Development in Arabidopsis. DOI: 10.1105/tpc.19.00562 ; PMID: 31806676
- Class-I TCP Transcription Factors Activate the SAUR63 Gene Subfamily in Gibberellin-Dependent Stamen Filament Elongation. DOI: 10.1104/pp.19.01501 ; PMID: 31988200
- Class I TCP transcription factors regulate trichome branching and cuticle development in Arabidopsis. DOI: 10.1093/jxb/eraa257 ; PMID: 32453824
- A Molecular Signal Integration Network Underpinning Arabidopsis Seed Germination. DOI: 10.1016/j.cub.2020.07.012 ; PMID: 32763174
- Class I TCP proteins TCP14 and TCP15 are required for elongation and gene expression responses to auxin. DOI: 10.1007/s11103-020-01075-y ; PMID: 32935297
- UBC19 is a new interacting protein of ORANGE for its nuclear localization in Arabidopsis thaliana. DOI: 10.1080/15592324.2021.1964847 ; PMID: 34405771
- An Expanding Portfolio. DOI: 10.3389/fpls.2022.825341 ; PMID: 35273626
- Class I TCP transcription factor AtTCP8 modulates key brassinosteroid-responsive genes. DOI: 10.1093/plphys/kiac332 ; PMID: 35866682
- Histone methylation readers MRG1/MRG2 interact with the transcription factor TCP14 to positively modulate cytokinin sensitivity in Arabidopsis. DOI: 10.1016/j.jgg.2023.02.011 ; PMID: 36870415
- Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. DOI: 10.1126/science.290.5499.2105 ; PMID: 11118137
Gene Resources
Homologs
- Actinidia chinensis Achn217741
- Brassica oleracea XP_013630119.1
- Brassica rapa XP_009149892.1
- Gossypium hirsutum Gh_D07G0639
- Juglans regia WALNUT_00009056-RA, WALNUT_00011528-RA
- Nicotiana tabacum XP_016472329.1
- Populus trichocarpa Potri.004G046300.1
- Raphanus raphanistrum RrC4255_p1
Sequences
cDNA Sequence
- >AT3G47620.1
CCCATATAATTCTCACTCATGATCTTTGTTTCTTTAAGCTTTTCTTCTCCATTGTCTCTCTCTTTCTTATCCTCTCTTTCTCAATCAATTCCTTCAGACTTATACACTTTATTTTTTTTCCCCTCTTGTCGAAAACATCACATATAAATAAAAAACCAAAAACCCTAATTTATAAAATATATATAAAATAGTTATAGCTCCCCACTTATATATGCAAAAGCCAACATCAAGTATCTTAAATGTCATAATGGACGGTGGAGACAGCGTCGGAGGAGGAGGAGGAGATGATCACCACCGTCACCTCCACCATCACCACCGCCCTACTTTCCCTTTTCAACTACTCGGAAAACACGACCCCGACGACAACCATCAACAACAACCTTCCCCTTCCTCCTCCTCCTCTCTATTTTCTCTCCATCAACACCAACAATTATCTCAATCGCAACCTCAATCGCAATCGCAAAAGTCACAACCGCAGACAACGCAAAAAGAGTTATTACAAACGCAAGAGGAATCTGCGGTGGTGGCAGCTAAAAAGCCACCGTTGAAACGAGCGTCGACGAAAGACCGACACACGAAAGTAGACGGAAGAGGGAGGAGAATAAGGATGCCGGCGTTATGTGCAGCTAGGGTTTTTCAGCTAACGCGAGAGCTAGGTCATAAATCCGACGGTGAGACAATAGAGTGGCTTCTTCAACAAGCTGAACCATCTGTAATCGCCGCCACCGGAACCGGAACAATCCCGGCGAATTTCACTTCTTTAAACATCTCTCTCCGTTCTTCAGGCTCTTCCATGTCTCTTCCTTCTCATTTCCGCTCCGCCGCTTCCACTTTTAGCCCTAATAACATATTTTCTCCGGCGATGCTTCAACAACAACAACAACAACAACGTGGTGGTGGTGTTGGGTTTCATCATCCCCATCTACAGGGACGTGCACCTACGTCGTCTTTGTTTCCTGGTATTGATAACTTCACACCAACGACGTCGTTTTTGAACTTTCATAATCCAACAAAGCAAGAAGGAGATCAAGATTCTGAAGAGTTAAACTCGGAGAAGAAAAGAAGAATCCAAACGACGTCGGATTTGCATCAACAACAACAACAACACCAACATGATCAAATCGGAGGATATACACTTCAATCTAGCAACAGTGGATCTACAGCCACCGCAGCCGCCGCGCAACAAATACCGGGAAATTTCTGGATGGTTGCGGCGGCTGCGGCTGCAGGTGGTGGTGGTGGTAATAACAACCAAACAGGTGGTCTTATGACAGCTTCTATTGGTACTGGTGGCGGCGGTGGAGAGCCTGTTTGGACGTTTCCTTCCATTAACACGGCAGCGGCAGCGTTATATAGAAGTGGCGTTTCGGGCGTTCCAAGCGGCGCGGTTTCTAGCGGTTTACATTTTATGAATTTCGCAGCGCCAATGGCATTTCTTACTGGACAACAACAGCTAGCAACAACTAGTAATCATGAGATTAATGAAGATAGTAATAATAATGAAGGAGGAAGAAGTGACGGTGGTGGTGATCATCATAATACACAGAGACATCATCATCATCAACAACAACATCATCATAATATTCTCTCCGGCTTGAACCAGTACGGACGGCAAGTTTCCGGCGACTCTCAAGCTAGTGGATCACTTGGAGGTGGTGATGAGGAGGATCAGCAAGATTAGACACACACAAAAACATTTTAACGGTGGGATTTTCTGCCGACGGCGGTAGCGGTGACGGCGTTCGGCGGCTGTGTAAAACTTTTGTTTTCACCGTTAATTTTTTTTATTTTCTGTAGTAATTTTTTTTGCTAAGTAAAAAAAAAAAAAAAAACACGTGAGATTTTCTTTTTAATTTTGATTTTTTTACTTGATTTTAAATTTGATTTTTCTTGTGAGTGAGTGATTAAATAGTACACGAGATTTTTTATGTCAGGTTTTTTGGATTTTGAGGAGAATATGACACTTTTTTTTATCATTATTGTTTTTAATTGTTTTTTTTCTTCTTCTGATAGTGTCACTGTCGTCTCGATTCTCAATCATCTTCGTTTTCTTTATCCATTAAGAAATTAATTATACATAAAGAAAAATTCTAAAAAGTATTCGTCAAACAATGTTGGTTCCTATAGTAATAATAGTAACATATACATCAAAGTATAATCTTACTGTTTTTTTAGTAACATTACGTTTTTTTAAGTGTTAATACAAAAAAAATTGAGAAACTATTTTATCAAGGAATGAGATGGGCCTCTCTCTATTGGCCCACCAATCTCTGTTATATTTGGCCCTTGAAGTAGTTGTTTCAAAGCTAATAGAAAACAGCAAAGTGTCTCGTTTGTTTTACATGGTCGAACGAAAACGATACAAAAAACATAAAAATATCTCGTTTGATCTTATATGCTATGAAATATATTAAATGCTTTTTTTAGTATATGATTCATTTTATCTCTGTTTCTTTGTCGTTTGTCC
CDS Sequence
- >AT3G47620.1
ATGCAAAAGCCAACATCAAGTATCTTAAATGTCATAATGGACGGTGGAGACAGCGTCGGAGGAGGAGGAGGAGATGATCACCACCGTCACCTCCACCATCACCACCGCCCTACTTTCCCTTTTCAACTACTCGGAAAACACGACCCCGACGACAACCATCAACAACAACCTTCCCCTTCCTCCTCCTCCTCTCTATTTTCTCTCCATCAACACCAACAATTATCTCAATCGCAACCTCAATCGCAATCGCAAAAGTCACAACCGCAGACAACGCAAAAAGAGTTATTACAAACGCAAGAGGAATCTGCGGTGGTGGCAGCTAAAAAGCCACCGTTGAAACGAGCGTCGACGAAAGACCGACACACGAAAGTAGACGGAAGAGGGAGGAGAATAAGGATGCCGGCGTTATGTGCAGCTAGGGTTTTTCAGCTAACGCGAGAGCTAGGTCATAAATCCGACGGTGAGACAATAGAGTGGCTTCTTCAACAAGCTGAACCATCTGTAATCGCCGCCACCGGAACCGGAACAATCCCGGCGAATTTCACTTCTTTAAACATCTCTCTCCGTTCTTCAGGCTCTTCCATGTCTCTTCCTTCTCATTTCCGCTCCGCCGCTTCCACTTTTAGCCCTAATAACATATTTTCTCCGGCGATGCTTCAACAACAACAACAACAACAACGTGGTGGTGGTGTTGGGTTTCATCATCCCCATCTACAGGGACGTGCACCTACGTCGTCTTTGTTTCCTGGTATTGATAACTTCACACCAACGACGTCGTTTTTGAACTTTCATAATCCAACAAAGCAAGAAGGAGATCAAGATTCTGAAGAGTTAAACTCGGAGAAGAAAAGAAGAATCCAAACGACGTCGGATTTGCATCAACAACAACAACAACACCAACATGATCAAATCGGAGGATATACACTTCAATCTAGCAACAGTGGATCTACAGCCACCGCAGCCGCCGCGCAACAAATACCGGGAAATTTCTGGATGGTTGCGGCGGCTGCGGCTGCAGGTGGTGGTGGTGGTAATAACAACCAAACAGGTGGTCTTATGACAGCTTCTATTGGTACTGGTGGCGGCGGTGGAGAGCCTGTTTGGACGTTTCCTTCCATTAACACGGCAGCGGCAGCGTTATATAGAAGTGGCGTTTCGGGCGTTCCAAGCGGCGCGGTTTCTAGCGGTTTACATTTTATGAATTTCGCAGCGCCAATGGCATTTCTTACTGGACAACAACAGCTAGCAACAACTAGTAATCATGAGATTAATGAAGATAGTAATAATAATGAAGGAGGAAGAAGTGACGGTGGTGGTGATCATCATAATACACAGAGACATCATCATCATCAACAACAACATCATCATAATATTCTCTCCGGCTTGAACCAGTACGGACGGCAAGTTTCCGGCGACTCTCAAGCTAGTGGATCACTTGGAGGTGGTGATGAGGAGGATCAGCAAGATTAG
Protein Sequence
- >AT3G47620.1
MQKPTSSILNVIMDGGDSVGGGGGDDHHRHLHHHHRPTFPFQLLGKHDPDDNHQQQPSPSSSSSLFSLHQHQQLSQSQPQSQSQKSQPQTTQKELLQTQEESAVVAAKKPPLKRASTKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTSLNISLRSSGSSMSLPSHFRSAASTFSPNNIFSPAMLQQQQQQQRGGGVGFHHPHLQGRAPTSSLFPGIDNFTPTTSFLNFHNPTKQEGDQDSEELNSEKKRRIQTTSDLHQQQQQHQHDQIGGYTLQSSNSGSTATAAAAQQIPGNFWMVAAAAAAGGGGGNNNQTGGLMTASIGTGGGGGEPVWTFPSINTAAAALYRSGVSGVPSGAVSSGLHFMNFAAPMAFLTGQQQLATTSNHEINEDSNNNEGGRSDGGGDHHNTQRHHHHQQQHHHNILSGLNQYGRQVSGDSQASGSLGGGDEEDQQD