Gene Details:

• Gene ID: AT3G47500
• Gene Symbol: CDF3
• Gene Name: cycling DOF factor 3
• Description: cycling DOF factor 3;(source:Araport11)
• TAIR Accession: locus:2079152
• Genome: Araport11_genome_release
• Species: Arabidopsis thaliana

Transcripts:

• AT3G47500.1

Plant Ontology Annotations:

• PO:0000037  — shoot axis apex — ápice del epiblasto (epiblastema) (Spanish, exact), シュート頂、茎頂 (Japanese, exact)
• PO:0008019  — leaf lamina base — base de la lámina de la hoja (Spanish, exact), 葉身基部 (Japanese, exact)
• PO:0009005  — root — raíz (Spanish, exact), radices (exact, plural), radix (exact), 根 (Japanese, exact), aerial root (narrow), climbing root (narrow)
• PO:0009006  — shoot system — sistema de epiblasto (epiblastema) (Spanish, exact), シュート系、苗条系 (Japanese, exact), Poaceae crown (related), shoot (related), thalli (related), thallus (related), tree crown (narrow)
• PO:0009009  — plant embryo — embrión (Spanish, exact), 植物胚 (Japanese, exact), germ (related), embryo (broad)
• PO:0009025  — vascular leaf — foliage leaf (exact), hoja vascular (Spanish, exact), leaf, vascular (exact), vascular leaves (exact, plural), 維管束のある葉, または維管束植物の葉 (Japanese, exact), crozier (related), macrophyll (related), megaphyll (related), ascidia (narrow), ascidium (narrow), fiddlehead (narrow), frond (narrow), needle-like leaf (narrow), pitcher (narrow), pitcher blade (narrow), pitcher-blade (narrow), scale-like leaf (narrow), sterile frond (narrow), trophophyll (narrow)
• PO:0009029  — stamen — estambre (Spanish, exact), 雄蕊 (Japanese, exact), Poaceae stamen (narrow), Zea stamen (narrow)
• PO:0009031  — sepal — sépalo (Spanish, exact), がく片 (Japanese, exact)
• PO:0009046  — flower — flor (Spanish, exact), 花 (Japanese, exact), floret (related), Asteraceae floret (narrow), basal flower (narrow), double flower (narrow), hermaphrodite flower (narrow), monoclinous flower (narrow), perfect flower (narrow)
• PO:0009052  — inflorescence flower pedicel — 小花柄 (Japanese, related), pedicelo (Spanish, broad)
• PO:0020030  — cotyledon — cotiledón (Spanish, exact), seed leaf (exact), 子葉 (Japanese, exact)
• PO:0020038  — petiole — pecíolo (Spanish, exact), 葉柄 (Japanese, exact)
• PO:0020100  — hypocotyl — hipocótile (Spanish, exact), 胚軸 (Japanese, exact)
• PO:0020137  — leaf apex — ápice de la hoja (Spanish, exact), 葉先 (Japanese, exact), leaf lamina apex (narrow), phyllid apex (narrow)
• PO:0025022  — collective leaf structure — estructura colectiva de hoja (Spanish, exact), leaf series (exact), 葉が集まった構造 (Japanese, exact), leaf whorl (narrow), rosette (narrow), cycle (broad), verticil (broad)
• PO:0025281  — pollen — polen (Spanish, exact), pollen grain (exact), 花粉 (Japanese, exact)
• PO:0025195  — pollen tube cell — célula del tubo polínico (Spanish, exact), 花粉管細胞 (Japanese, exact)

Gene Ontology:

• GO:0005634  — located in — nucleus
• GO:0003700  — enables — DNA-binding transcription factor activity
• GO:0006355  — acts upstream of or within — regulation of DNA-templated transcription
• GO:0005515  — enables — protein binding
• GO:0003677  — enables — DNA binding

Germplasm Phenotype:

• CS2110092  — early flowering, short hypocotyl
• SAIL_434_G09 (homo)  — Under FRc conditions, the length mutant hypocotyls is similar to that of wild-type plants. Under Rc conditions, the hypocotyl length is decreased and the cotyledon area is similar to that of wild type.

Function-related keywords:

• shoot axis apex ,  leaf lamina base ,  root ,  shoot system ,  plant embryo ,  vascular leaf ,  stamen ,  sepal ,  flower ,  inflorescence flower pedicel ,  cotyledon ,  petiole ,  hypocotyl ,  leaf apex ,  collective leaf structure ,  pollen ,  pollen tube cell

Literature:

• Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.   DOI:  10.1126/science.290.5499.2105 ;  PMID:  11118137
• Transcriptome changes for Arabidopsis in response to salt, osmotic, and cold stress.   DOI:  10.1104/pp.008532 ;  PMID:  12481097
• The Dof family of plant transcription factors.   DOI:  10.1016/s1360-1385(02)02362-2 ;  PMID:  12475498
• The FHY3 and FAR1 genes encode transposase-related proteins involved in regulation of gene expression by the phytochrome A-signaling pathway.   DOI:  10.1046/j.1365-313x.2003.01741.x ;  PMID:  12753585
• Genome-wide comparative phylogenetic analysis of the rice and Arabidopsis Dof gene families.   DOI:  10.1186/1471-2148-3-17 ;  PMID:  12877745
• Expression profiling of phyB mutant demonstrates substantial contribution of other phytochromes to red-light-regulated gene expression during seedling de-etiolation.   DOI:  10.1111/j.1365-313X.2004.02084.x ;  PMID:  15144375
• Roles of the CBF2 and ZAT12 transcription factors in configuring the low temperature transcriptome of Arabidopsis.   DOI:  10.1111/j.1365-313X.2004.02288.x ;  PMID:  15634197
• FKF1 F-box protein mediates cyclic degradation of a repressor of CONSTANS in Arabidopsis.   DOI:  10.1126/science.1110586 ;  PMID:  16002617
• The transcription factor ATAF2 represses the expression of pathogenesis-related genes in Arabidopsis.   DOI:  10.1111/j.1365-313X.2005.02488.x ;  PMID:  16115070
• Functional profiling reveals that only a small number of phytochrome-regulated early-response genes in Arabidopsis are necessary for optimal deetiolation.   DOI:  10.1105/tpc.106.042200 ;  PMID:  16891401
• Putative cold acclimation pathways in Arabidopsis thaliana identified by a combined analysis of mRNA co-expression patterns, promoter motifs and transcription factors.   DOI:  10.1186/1471-2164-8-304 ;  PMID:  17764576
• Comparative transcriptomics of Arabidopsis sperm cells.   DOI:  10.1104/pp.108.125229 ;  PMID:  18667720
• Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.   DOI:  10.1104/pp.108.121038 ;  PMID:  18650403
• Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis.   DOI:  10.1104/pp.108.126375 ;  PMID:  18775970
• Differentiation of Arabidopsis guard cells: analysis of the networks incorporating the basic helix-loop-helix transcription factor, FAMA.   DOI:  10.1104/pp.110.167718 ;  PMID:  21245191
• Comparative genomic analysis of soybean flowering genes.   DOI:  10.1371/journal.pone.0038250 ;  PMID:  22679494
• Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.   DOI:  10.1186/1471-2229-13-229 ;  PMID:  24377444
• Multifaceted role of cycling DOF factor 3 (CDF3) in the regulation of flowering time and abiotic stress responses in Arabidopsis.   DOI:  10.1111/pce.12894 ;  PMID:  28044345
• The antiphasic regulatory module comprising CDF5 and its antisense RNA FLORE links the circadian clock to photoperiodic flowering.   DOI:  10.1111/nph.14703 ;  PMID:  28758689
• Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.   DOI:  10.1126/science.290.5499.2105 ;  PMID:  11118137
• Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.   DOI:  10.1093/molbev/msj051 ;  PMID:  16280546

Sequences: